Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 SNORA48.3-201ENST00000391081 134 ntBASIC1.73□□□□□ -2.13
HOXA1P49639 MIR548H3-201ENST00000408771 118 ntBASIC1.73□□□□□ -2.13
HOXA1P49639 Y_RNA.618-201ENST00000410949 107 ntBASIC1.73□□□□□ -2.13
HOXA1P49639 AL592431.2-201ENST00000422198 171 ntTSL 3 BASIC1.73□□□□□ -2.13
HOXA1P49639 HSPE1P21-201ENST00000438283 308 ntBASIC1.73□□□□□ -2.13
HOXA1P49639 AC091021.1-201ENST00000468051 388 ntBASIC1.73□□□□□ -2.13
HOXA1P49639 AC117454.1-201ENST00000491120 168 ntBASIC1.73□□□□□ -2.13
HOXA1P49639 RNU6-1146P-201ENST00000516282 102 ntBASIC1.73□□□□□ -2.13
HOXA1P49639 CARD18-203ENST00000532895 422 ntTSL 2 BASIC1.73□□□□□ -2.13
HOXA1P49639 MIR3684-201ENST00000579779 74 ntBASIC1.73□□□□□ -2.13
HOXA1P49639 AC005357.1-201ENST00000588399 301 ntBASIC1.73□□□□□ -2.13
HOXA1P49639 AC005786.1-201ENST00000588553 154 ntBASIC1.73□□□□□ -2.13
HOXA1P49639 U91328.3-201ENST00000608931 354 ntTSL 3 BASIC1.73□□□□□ -2.13
HOXA1P49639 UBE2WP1-201ENST00000362030 340 ntBASIC1.72□□□□□ -2.13
HOXA1P49639 RNU4-10P-201ENST00000364383 140 ntBASIC1.72□□□□□ -2.13
HOXA1P49639 Y_RNA.368-201ENST00000365547 113 ntBASIC1.72□□□□□ -2.13
HOXA1P49639 SNORA72.4-201ENST00000384174 132 ntBASIC1.72□□□□□ -2.13
HOXA1P49639 RNA5SP109-201ENST00000391010 116 ntBASIC1.72□□□□□ -2.13
HOXA1P49639 RNA5SP465-201ENST00000391195 109 ntBASIC1.72□□□□□ -2.13
HOXA1P49639 AC018511.2-201ENST00000413431 189 ntTSL 3 BASIC1.72□□□□□ -2.13
HOXA1P49639 AL136320.1-201ENST00000417273 430 ntTSL 3 BASIC1.72□□□□□ -2.13
HOXA1P49639 CST2P1-201ENST00000425770 87 ntBASIC1.72□□□□□ -2.13
HOXA1P49639 AC024067.1-201ENST00000426199 223 ntBASIC1.72□□□□□ -2.13
HOXA1P49639 AC245047.4-201ENST00000433189 144 ntBASIC1.72□□□□□ -2.13
HOXA1P49639 AC104332.1-201ENST00000440471 797 ntBASIC1.72□□□□□ -2.13
HOXA1P49639 RNU7-141P-201ENST00000459304 62 ntBASIC1.72□□□□□ -2.13
HOXA1P49639 RNU6-1023P-201ENST00000516137 106 ntBASIC1.72□□□□□ -2.13
HOXA1P49639 RNA5SP200-201ENST00000516360 103 ntBASIC1.72□□□□□ -2.13
HOXA1P49639 RNU6-1291P-201ENST00000516591 104 ntBASIC1.72□□□□□ -2.13
HOXA1P49639 MIR4529-201ENST00000578110 78 ntBASIC1.72□□□□□ -2.13
HOXA1P49639 AL162424.1-201ENST00000602325 221 ntBASIC1.72□□□□□ -2.13
HOXA1P49639 AL359075.3-201ENST00000613288 217 ntBASIC1.72□□□□□ -2.13
HOXA1P49639 AC006435.5-201ENST00000624486 112 ntBASIC1.72□□□□□ -2.13
HOXA1P49639 PI15-201ENST00000260113 6732 ntAPPRIS P1 TSL 1 (best) BASIC1.72□□□□□ -2.13
HOXA1P49639 KTN1-214ENST00000554507 2057 ntTSL 1 (best) BASIC1.71□□□□□ -2.13
HOXA1P49639 SI-201ENST00000264382 6011 ntAPPRIS P1 TSL 1 (best) BASIC1.71□□□□□ -2.14
HOXA1P49639 Y_RNA.20-201ENST00000362479 113 ntBASIC1.71□□□□□ -2.14
HOXA1P49639 Y_RNA.122-201ENST00000363331 96 ntBASIC1.71□□□□□ -2.14
HOXA1P49639 RNU6-211P-201ENST00000384047 107 ntBASIC1.71□□□□□ -2.14
HOXA1P49639 Y_RNA.476-201ENST00000384347 108 ntBASIC1.71□□□□□ -2.14
HOXA1P49639 Y_RNA.590-201ENST00000410140 107 ntBASIC1.71□□□□□ -2.14
HOXA1P49639 RNU6-710P-201ENST00000410424 105 ntBASIC1.71□□□□□ -2.14
HOXA1P49639 AL445685.2-201ENST00000422551 342 ntBASIC1.71□□□□□ -2.14
HOXA1P49639 AL356320.1-201ENST00000429616 163 ntBASIC1.71□□□□□ -2.14
HOXA1P49639 RPS4XP11-201ENST00000446897 772 ntBASIC1.71□□□□□ -2.14
HOXA1P49639 SUMO1P2-201ENST00000452524 304 ntBASIC1.71□□□□□ -2.14
HOXA1P49639 RPL23AP42-201ENST00000471152 471 ntBASIC1.71□□□□□ -2.14
HOXA1P49639 LINC02276-201ENST00000508388 138 ntTSL 3 BASIC1.71□□□□□ -2.14
HOXA1P49639 RNU7-99P-201ENST00000516271 62 ntBASIC1.71□□□□□ -2.14
HOXA1P49639 Y_RNA.679-201ENST00000516416 91 ntBASIC1.71□□□□□ -2.14
HOXA1P49639 RNU1-142P-201ENST00000516682 145 ntBASIC1.71□□□□□ -2.14
HOXA1P49639 AC136628.3-201ENST00000521868 290 ntBASIC1.71□□□□□ -2.14
HOXA1P49639 AC084364.2-201ENST00000546924 395 ntBASIC1.71□□□□□ -2.14
HOXA1P49639 DEFB122-202ENST00000569013 197 ntBASIC1.71□□□□□ -2.14
HOXA1P49639 ATP11C-202ENST00000361648 6010 ntAPPRIS ALT2 TSL 1 (best) BASIC1.71□□□□□ -2.14
HOXA1P49639 KLRA1P-203ENST00000535939 2353 ntTSL 1 (best) BASIC1.7□□□□□ -2.14
HOXA1P49639 FABP12-201ENST00000360464 551 ntAPPRIS P1 TSL 1 (best) BASIC1.7□□□□□ -2.14
HOXA1P49639 Y_RNA.267-201ENST00000364679 109 ntBASIC1.7□□□□□ -2.14
HOXA1P49639 Y_RNA.456-201ENST00000384232 111 ntBASIC1.7□□□□□ -2.14
HOXA1P49639 Y_RNA.489-201ENST00000384410 101 ntBASIC1.7□□□□□ -2.14
HOXA1P49639 MT-TG-201ENST00000387429 68 ntBASIC1.7□□□□□ -2.14
HOXA1P49639 TRAJ50-201ENST00000390487 60 ntAPPRIS P1 BASIC1.7□□□□□ -2.14
HOXA1P49639 RNU6ATAC23P-201ENST00000408448 123 ntBASIC1.7□□□□□ -2.14
HOXA1P49639 OOSP1P1-201ENST00000423265 274 ntBASIC1.7□□□□□ -2.14
HOXA1P49639 AL162725.1-201ENST00000435405 301 ntBASIC1.7□□□□□ -2.14
HOXA1P49639 HSPE1P13-201ENST00000451143 297 ntBASIC1.7□□□□□ -2.14
HOXA1P49639 AC233266.1-201ENST00000454518 96 ntBASIC1.7□□□□□ -2.14
HOXA1P49639 RNU6-1278P-201ENST00000516130 107 ntBASIC1.7□□□□□ -2.14
HOXA1P49639 RNY3P16-201ENST00000516338 101 ntBASIC1.7□□□□□ -2.14
HOXA1P49639 SCARNA16.3-201ENST00000516595 184 ntBASIC1.7□□□□□ -2.14
HOXA1P49639 RNU6-1096P-201ENST00000517089 102 ntBASIC1.7□□□□□ -2.14
HOXA1P49639 HMSD-204ENST00000526932 162 ntTSL 3 BASIC1.7□□□□□ -2.14
HOXA1P49639 AC024405.2-202ENST00000532731 184 ntBASIC1.7□□□□□ -2.14
HOXA1P49639 MIR4435-1-201ENST00000582552 80 ntBASIC1.7□□□□□ -2.14
HOXA1P49639 AC022217.4-201ENST00000604389 163 ntBASIC1.7□□□□□ -2.14
HOXA1P49639 AC242852.1-201ENST00000612151 96 ntBASIC1.7□□□□□ -2.14
HOXA1P49639 KCNQ1OT1_5.1-201ENST00000621902 226 ntBASIC1.7□□□□□ -2.14
HOXA1P49639 AC244015.1-201ENST00000622301 99 ntBASIC1.7□□□□□ -2.14
HOXA1P49639 MIR6873-201ENST00000622788 63 ntBASIC1.7□□□□□ -2.14
HOXA1P49639 PYGO1-201ENST00000302000 8488 ntTSL 1 (best) BASIC1.7□□□□□ -2.14
HOXA1P49639 SNORD114-7-201ENST00000362520 77 ntBASIC1.69□□□□□ -2.14
HOXA1P49639 RNU4-13P-201ENST00000364019 141 ntBASIC1.69□□□□□ -2.14
HOXA1P49639 SNORA4.2-201ENST00000365313 147 ntBASIC1.69□□□□□ -2.14
HOXA1P49639 Y_RNA.572-201ENST00000384757 98 ntBASIC1.69□□□□□ -2.14
HOXA1P49639 SNORA48.1-201ENST00000390879 135 ntBASIC1.69□□□□□ -2.14
HOXA1P49639 MIR1278-201ENST00000408753 81 ntBASIC1.69□□□□□ -2.14
HOXA1P49639 SNORA11.4-201ENST00000408823 129 ntBASIC1.69□□□□□ -2.14
HOXA1P49639 MIR3671-201ENST00000580455 88 ntBASIC1.69□□□□□ -2.14
HOXA1P49639 AC069114.2-201ENST00000604699 304 ntBASIC1.69□□□□□ -2.14
HOXA1P49639 BX284668.6-201ENST00000606899 438 ntBASIC1.69□□□□□ -2.14
HOXA1P49639 ZNF702P-202ENST00000434269 1966 ntBASIC1.68□□□□□ -2.14
HOXA1P49639 AC008555.8-201ENST00000623602 2168 ntBASIC1.68□□□□□ -2.14
HOXA1P49639 RNU6-1080P-201ENST00000383982 107 ntBASIC1.68□□□□□ -2.14
HOXA1P49639 TRAJ11-201ENST00000390526 60 ntAPPRIS P1 BASIC1.68□□□□□ -2.14
HOXA1P49639 AL512604.1-201ENST00000404812 257 ntBASIC1.68□□□□□ -2.14
HOXA1P49639 LINC01701-201ENST00000419614 451 ntTSL 2 BASIC1.68□□□□□ -2.14
HOXA1P49639 AC010154.1-201ENST00000425857 269 ntBASIC1.68□□□□□ -2.14
HOXA1P49639 LINC02534-201ENST00000446525 283 ntTSL 3 BASIC1.68□□□□□ -2.14
HOXA1P49639 AL035415.1-201ENST00000447150 289 ntTSL 5 BASIC1.68□□□□□ -2.14
HOXA1P49639 RPS27P1-201ENST00000450552 247 ntBASIC1.68□□□□□ -2.14
Retrieved 100 of 98,524 protein–RNA pairs in 168.3 ms