Protein–RNA interactions for Protein: P46934

NEDD4, E3 ubiquitin-protein ligase NEDD4, humanhuman

Predictions only

Length 1,319 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4P46934 HIF1A-212ENST00000557538 3468 ntTSL 1 (best) BASIC1.45□□□□□ -2.18
NEDD4P46934 Y_RNA.101-201ENST00000363154 102 ntBASIC1.45□□□□□ -2.18
NEDD4P46934 SNORD115-30-201ENST00000364117 82 ntBASIC1.45□□□□□ -2.18
NEDD4P46934 SNORA25.9-201ENST00000365087 128 ntBASIC1.45□□□□□ -2.18
NEDD4P46934 Y_RNA.327-201ENST00000365201 102 ntBASIC1.45□□□□□ -2.18
NEDD4P46934 RNU6-407P-201ENST00000365280 104 ntBASIC1.45□□□□□ -2.18
NEDD4P46934 RNU6-53P-201ENST00000365367 106 ntBASIC1.45□□□□□ -2.18
NEDD4P46934 Y_RNA.446-201ENST00000384178 104 ntBASIC1.45□□□□□ -2.18
NEDD4P46934 SNORD63-201ENST00000384262 68 ntBASIC1.45□□□□□ -2.18
NEDD4P46934 TRAJ39-201ENST00000390498 63 ntAPPRIS P1 BASIC1.45□□□□□ -2.18
NEDD4P46934 RNU6-308P-201ENST00000390957 107 ntBASIC1.45□□□□□ -2.18
NEDD4P46934 MIR548P-201ENST00000408336 84 ntBASIC1.45□□□□□ -2.18
NEDD4P46934 AL354751.2-201ENST00000415471 210 ntBASIC1.45□□□□□ -2.18
NEDD4P46934 COX6CP10-201ENST00000416832 224 ntBASIC1.45□□□□□ -2.18
NEDD4P46934 HSPE1P21-201ENST00000438283 308 ntBASIC1.45□□□□□ -2.18
NEDD4P46934 RPS27P1-201ENST00000450552 247 ntBASIC1.45□□□□□ -2.18
NEDD4P46934 HSPE1P24-201ENST00000450782 238 ntBASIC1.45□□□□□ -2.18
NEDD4P46934 snoU13.27-201ENST00000459278 104 ntBASIC1.45□□□□□ -2.18
NEDD4P46934 RPS26P55-201ENST00000471178 356 ntBASIC1.45□□□□□ -2.18
NEDD4P46934 RNU6-1278P-201ENST00000516130 107 ntBASIC1.45□□□□□ -2.18
NEDD4P46934 AL356133.2-201ENST00000521572 371 ntTSL 3 BASIC1.45□□□□□ -2.18
NEDD4P46934 AC022616.4-201ENST00000522985 181 ntBASIC1.45□□□□□ -2.18
NEDD4P46934 AC018630.2-201ENST00000534866 2403 ntBASIC1.45□□□□□ -2.18
NEDD4P46934 MIPOL1-203ENST00000537471 5954 ntAPPRIS P1 TSL 5 BASIC1.45□□□□□ -2.18
NEDD4P46934 Y_RNA.148-201ENST00000363557 117 ntBASIC1.44□□□□□ -2.18
NEDD4P46934 Y_RNA.202-201ENST00000364083 110 ntBASIC1.44□□□□□ -2.18
NEDD4P46934 RNU4-76P-201ENST00000364509 141 ntBASIC1.44□□□□□ -2.18
NEDD4P46934 Y_RNA.471-201ENST00000384312 102 ntBASIC1.44□□□□□ -2.18
NEDD4P46934 RNA5SP109-201ENST00000391010 116 ntBASIC1.44□□□□□ -2.18
NEDD4P46934 RPL21P1-201ENST00000399532 476 ntBASIC1.44□□□□□ -2.18
NEDD4P46934 MRPL42P3-201ENST00000401492 326 ntBASIC1.44□□□□□ -2.18
NEDD4P46934 AC015922.2-201ENST00000435593 184 ntBASIC1.44□□□□□ -2.18
NEDD4P46934 AC005002.2-201ENST00000438228 269 ntBASIC1.44□□□□□ -2.18
NEDD4P46934 AC008080.3-201ENST00000440074 380 ntTSL 3 BASIC1.44□□□□□ -2.18
NEDD4P46934 JTBP1-201ENST00000441314 247 ntBASIC1.44□□□□□ -2.18
NEDD4P46934 HSPE1P13-201ENST00000451143 297 ntBASIC1.44□□□□□ -2.18
NEDD4P46934 AC008834.1-201ENST00000511612 175 ntBASIC1.44□□□□□ -2.18
NEDD4P46934 Y_RNA.711-201ENST00000516993 102 ntBASIC1.44□□□□□ -2.18
NEDD4P46934 MIR4709-201ENST00000577272 72 ntBASIC1.44□□□□□ -2.18
NEDD4P46934 AC022217.4-201ENST00000604389 163 ntBASIC1.44□□□□□ -2.18
NEDD4P46934 ZNF518A-210ENST00000624776 7994 ntAPPRIS P1 TSL 1 (best) BASIC1.44□□□□□ -2.18
NEDD4P46934 Y_RNA.138-201ENST00000363462 102 ntBASIC1.43□□□□□ -2.18
NEDD4P46934 RNU6-1175P-201ENST00000365200 107 ntBASIC1.43□□□□□ -2.18
NEDD4P46934 Y_RNA.394-201ENST00000383942 103 ntBASIC1.43□□□□□ -2.18
NEDD4P46934 Y_RNA.570-201ENST00000384750 101 ntBASIC1.43□□□□□ -2.18
NEDD4P46934 AL031003.1-201ENST00000404229 172 ntBASIC1.43□□□□□ -2.18
NEDD4P46934 RN7SKP200-201ENST00000410564 320 ntBASIC1.43□□□□□ -2.18
NEDD4P46934 RNU6-1199P-201ENST00000411249 104 ntBASIC1.43□□□□□ -2.18
NEDD4P46934 MTND1P14-201ENST00000427400 950 ntBASIC1.43□□□□□ -2.18
NEDD4P46934 AC005042.3-201ENST00000453230 174 ntBASIC1.43□□□□□ -2.18
NEDD4P46934 Y_RNA.701-201ENST00000516812 110 ntBASIC1.43□□□□□ -2.18
NEDD4P46934 AL162424.1-201ENST00000602325 221 ntBASIC1.43□□□□□ -2.18
NEDD4P46934 AC073413.2-201ENST00000604332 360 ntBASIC1.43□□□□□ -2.18
NEDD4P46934 AC124312.5-201ENST00000604451 268 ntBASIC1.43□□□□□ -2.18
NEDD4P46934 5S_rRNA.13-201ENST00000622298 123 ntBASIC1.43□□□□□ -2.18
NEDD4P46934 TTK-211ENST00000627129 240 ntTSL 5 BASIC1.43□□□□□ -2.18
NEDD4P46934 PPP1R3A-201ENST00000284601 4384 ntAPPRIS P1 TSL 1 (best) BASIC1.42□□□□□ -2.18
NEDD4P46934 Y_RNA.796-201ENST00000364268 102 ntBASIC1.42□□□□□ -2.18
NEDD4P46934 Y_RNA.799-201ENST00000364992 102 ntBASIC1.42□□□□□ -2.18
NEDD4P46934 Y_RNA.380-201ENST00000365663 111 ntBASIC1.42□□□□□ -2.18
NEDD4P46934 MIR1267-201ENST00000408723 78 ntBASIC1.42□□□□□ -2.18
NEDD4P46934 RNU6-101P-201ENST00000410323 104 ntBASIC1.42□□□□□ -2.18
NEDD4P46934 AC108488.2-201ENST00000438485 421 ntAPPRIS P1 TSL 3 BASIC1.42□□□□□ -2.18
NEDD4P46934 RPEP5-201ENST00000441137 268 ntBASIC1.42□□□□□ -2.18
NEDD4P46934 RNU6-436P-201ENST00000516171 114 ntBASIC1.42□□□□□ -2.18
NEDD4P46934 RNU6-155P-201ENST00000516347 100 ntBASIC1.42□□□□□ -2.18
NEDD4P46934 AC007991.3-201ENST00000517623 502 ntTSL 4 BASIC1.42□□□□□ -2.18
NEDD4P46934 AC126177.2-201ENST00000552154 452 ntTSL 3 BASIC1.42□□□□□ -2.18
NEDD4P46934 MIR3171-201ENST00000584270 74 ntBASIC1.42□□□□□ -2.18
NEDD4P46934 AC011373.1-201ENST00000607270 237 ntBASIC1.42□□□□□ -2.18
NEDD4P46934 MIR8054-201ENST00000620877 86 ntBASIC1.42□□□□□ -2.18
NEDD4P46934 MIR6079-201ENST00000635807 62 ntBASIC1.42□□□□□ -2.18
NEDD4P46934 OR4C11-202ENST00000641580 2737 ntAPPRIS P1 BASIC1.42□□□□□ -2.18
NEDD4P46934 CHST9-202ENST00000581714 2043 ntAPPRIS P1 TSL 1 (best) BASIC1.42□□□□□ -2.18
NEDD4P46934 LINC01790-201ENST00000447194 2852 ntTSL 2 BASIC1.42□□□□□ -2.18
NEDD4P46934 RNU6-117P-201ENST00000365415 107 ntBASIC1.41□□□□□ -2.18
NEDD4P46934 SNORA22B-201ENST00000383876 138 ntBASIC1.41□□□□□ -2.18
NEDD4P46934 RNU6-439P-201ENST00000384188 106 ntBASIC1.41□□□□□ -2.18
NEDD4P46934 RNU6-376P-201ENST00000384731 106 ntBASIC1.41□□□□□ -2.18
NEDD4P46934 RNU6-823P-201ENST00000391042 103 ntBASIC1.41□□□□□ -2.18
NEDD4P46934 Y_RNA.645-201ENST00000391229 102 ntBASIC1.41□□□□□ -2.18
NEDD4P46934 MIR934-201ENST00000401241 83 ntBASIC1.41□□□□□ -2.18
NEDD4P46934 MIR1252-201ENST00000408861 65 ntBASIC1.41□□□□□ -2.18
NEDD4P46934 RNU6-955P-201ENST00000410497 104 ntBASIC1.41□□□□□ -2.18
NEDD4P46934 AC245047.3-201ENST00000429428 127 ntBASIC1.41□□□□□ -2.18
NEDD4P46934 AC005534.2-201ENST00000431047 433 ntBASIC1.41□□□□□ -2.18
NEDD4P46934 snoU13.9-201ENST00000458927 103 ntBASIC1.41□□□□□ -2.18
NEDD4P46934 RNU6-341P-201ENST00000516973 96 ntBASIC1.41□□□□□ -2.18
NEDD4P46934 AC020661.2-201ENST00000560114 134 ntBASIC1.41□□□□□ -2.18
NEDD4P46934 AC084882.1-201ENST00000561254 555 ntTSL 4 BASIC1.41□□□□□ -2.18
NEDD4P46934 SNORA77B-201ENST00000578179 125 ntBASIC1.41□□□□□ -2.18
NEDD4P46934 AC044792.1-201ENST00000593294 196 ntBASIC1.41□□□□□ -2.18
NEDD4P46934 AC104695.3-201ENST00000604052 296 ntBASIC1.41□□□□□ -2.18
NEDD4P46934 ZFAT-AS1_2.1-201ENST00000613742 201 ntBASIC1.41□□□□□ -2.18
NEDD4P46934 AC040896.1-201ENST00000613819 479 ntBASIC1.41□□□□□ -2.18
NEDD4P46934 MIR7111-201ENST00000619751 72 ntBASIC1.41□□□□□ -2.18
NEDD4P46934 AC025539.1-201ENST00000515343 4019 ntTSL 2 BASIC1.41□□□□□ -2.18
NEDD4P46934 Y_RNA.124-201ENST00000363339 93 ntBASIC1.4□□□□□ -2.18
NEDD4P46934 Y_RNA.158-201ENST00000363651 101 ntBASIC1.4□□□□□ -2.18
NEDD4P46934 RNU6-324P-201ENST00000363957 106 ntBASIC1.4□□□□□ -2.18
Retrieved 100 of 98,524 protein–RNA pairs in 214.5 ms