Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 RNU2-55P-201ENST00000411146 174 ntBASIC2.58□□□□□ -2
MSX2P35548 RNU2-32P-201ENST00000411193 191 ntBASIC2.58□□□□□ -2
MSX2P35548 CYCSP49-201ENST00000420810 319 ntBASIC2.58□□□□□ -2
MSX2P35548 COTL1P1-201ENST00000422309 375 ntBASIC2.58□□□□□ -2
MSX2P35548 AC010154.1-201ENST00000425857 269 ntBASIC2.58□□□□□ -2
MSX2P35548 AC025750.2-201ENST00000442609 450 ntBASIC2.58□□□□□ -2
MSX2P35548 AL353614.1-201ENST00000445631 206 ntTSL 5 BASIC2.58□□□□□ -2
MSX2P35548 AC245102.2-201ENST00000448956 180 ntBASIC2.58□□□□□ -2
MSX2P35548 RNU7-26P-201ENST00000458980 63 ntBASIC2.58□□□□□ -2
MSX2P35548 RPL23AP94-201ENST00000512518 302 ntBASIC2.58□□□□□ -2
MSX2P35548 RNA5SP341-201ENST00000516261 117 ntBASIC2.58□□□□□ -2
MSX2P35548 RNU6-197P-201ENST00000516680 100 ntBASIC2.58□□□□□ -2
MSX2P35548 RNA5SP490-201ENST00000517141 136 ntBASIC2.58□□□□□ -2
MSX2P35548 AL160236.1-201ENST00000556317 195 ntBASIC2.58□□□□□ -2
MSX2P35548 AC011603.4-201ENST00000611325 277 ntBASIC2.58□□□□□ -2
MSX2P35548 ZCCHC10-202ENST00000355372 2160 ntAPPRIS ALT2 TSL 2 BASIC2.58□□□□□ -2
MSX2P35548 TMEM232-201ENST00000455884 2501 ntAPPRIS P2 TSL 2 BASIC2.58□□□□□ -2
MSX2P35548 NAALADL2-203ENST00000454872 9865 ntAPPRIS P1 TSL 1 (best) BASIC2.57□□□□□ -2
MSX2P35548 MIR340-201ENST00000362125 95 ntBASIC2.57□□□□□ -2
MSX2P35548 RNU1-23P-201ENST00000363361 144 ntBASIC2.57□□□□□ -2
MSX2P35548 RNU4-13P-201ENST00000364019 141 ntBASIC2.57□□□□□ -2
MSX2P35548 AL357134.1-201ENST00000445848 426 ntBASIC2.57□□□□□ -2
MSX2P35548 RPS4XP11-201ENST00000446897 772 ntBASIC2.57□□□□□ -2
MSX2P35548 AC097462.1-201ENST00000514125 324 ntBASIC2.57□□□□□ -2
MSX2P35548 RNU2-56P-201ENST00000516826 190 ntBASIC2.57□□□□□ -2
MSX2P35548 AL049861.1-201ENST00000603130 150 ntBASIC2.57□□□□□ -2
MSX2P35548 U7.2-201ENST00000607576 63 ntBASIC2.57□□□□□ -2
MSX2P35548 DSCR8-208ENST00000614538 403 ntAPPRIS P5 TSL 5 BASIC2.57□□□□□ -2
MSX2P35548 PRKACB-207ENST00000394838 4294 ntTSL 5 BASIC2.56□□□□□ -2
MSX2P35548 RNU6-915P-201ENST00000364943 103 ntBASIC2.56□□□□□ -2
MSX2P35548 Y_RNA.332-201ENST00000365271 113 ntBASIC2.56□□□□□ -2
MSX2P35548 RNU6-1336P-201ENST00000383886 109 ntBASIC2.56□□□□□ -2
MSX2P35548 Y_RNA.432-201ENST00000384087 111 ntBASIC2.56□□□□□ -2
MSX2P35548 RNU6-136P-201ENST00000384663 107 ntBASIC2.56□□□□□ -2
MSX2P35548 Y_RNA.563-201ENST00000384707 108 ntBASIC2.56□□□□□ -2
MSX2P35548 SNORA79-201ENST00000408376 140 ntBASIC2.56□□□□□ -2
MSX2P35548 RNU2-48P-201ENST00000410694 191 ntBASIC2.56□□□□□ -2
MSX2P35548 AC022018.1-201ENST00000430685 241 ntBASIC2.56□□□□□ -2
MSX2P35548 AL161788.1-201ENST00000441805 169 ntBASIC2.56□□□□□ -2
MSX2P35548 ITCH-AS1-201ENST00000454205 299 ntTSL 5 BASIC2.56□□□□□ -2
MSX2P35548 AL353743.2-204ENST00000456242 419 ntTSL 3 BASIC2.56□□□□□ -2
MSX2P35548 CYP2C59P-201ENST00000457790 269 ntBASIC2.56□□□□□ -2
MSX2P35548 UBE2DNL-203ENST00000474922 222 ntBASIC2.56□□□□□ -2
MSX2P35548 AC093259.1-201ENST00000509755 300 ntBASIC2.56□□□□□ -2
MSX2P35548 EIF4BP1-201ENST00000554881 351 ntBASIC2.56□□□□□ -2
MSX2P35548 MIR4513-201ENST00000581077 86 ntBASIC2.56□□□□□ -2
MSX2P35548 MIR4438-201ENST00000585271 93 ntBASIC2.56□□□□□ -2
MSX2P35548 PHTF2-202ENST00000275575 4541 ntTSL 1 (best) BASIC2.56□□□□□ -2
MSX2P35548 CENPQ-201ENST00000335783 1733 ntAPPRIS P1 TSL 1 (best) BASIC2.56□□□□□ -2
MSX2P35548 CEP57-213ENST00000541150 2911 ntAPPRIS ALT2 TSL 5 BASIC2.55□□□□□ -2
MSX2P35548 Y_RNA.203-201ENST00000364106 102 ntBASIC2.55□□□□□ -2
MSX2P35548 DEFA7P-201ENST00000382676 285 ntBASIC2.55□□□□□ -2
MSX2P35548 RNU2-63P-201ENST00000410792 194 ntBASIC2.55□□□□□ -2
MSX2P35548 AL035461.1-201ENST00000421490 332 ntBASIC2.55□□□□□ -2
MSX2P35548 AC245047.4-201ENST00000433189 144 ntBASIC2.55□□□□□ -2
MSX2P35548 SNORD11-201ENST00000459124 84 ntBASIC2.55□□□□□ -2
MSX2P35548 SNORD77.4-201ENST00000516158 81 ntBASIC2.55□□□□□ -2
MSX2P35548 RNU6-856P-201ENST00000516959 98 ntBASIC2.55□□□□□ -2
MSX2P35548 RPL12P50-201ENST00000603116 116 ntBASIC2.55□□□□□ -2
MSX2P35548 RNU6-743P-201ENST00000364151 106 ntBASIC2.54□□□□□ -2
MSX2P35548 RNU6-44P-201ENST00000384045 107 ntBASIC2.54□□□□□ -2
MSX2P35548 Y_RNA.525-201ENST00000384570 113 ntBASIC2.54□□□□□ -2
MSX2P35548 RNA5SP181-201ENST00000410246 98 ntBASIC2.54□□□□□ -2
MSX2P35548 AC123900.1-201ENST00000420390 96 ntBASIC2.54□□□□□ -2
MSX2P35548 AC063976.3-201ENST00000426849 329 ntBASIC2.54□□□□□ -2
MSX2P35548 RNU7-107P-201ENST00000459121 61 ntBASIC2.54□□□□□ -2
MSX2P35548 S100A11P2-201ENST00000467589 312 ntBASIC2.54□□□□□ -2
MSX2P35548 AC092666.1-201ENST00000492054 573 ntTSL 4 BASIC2.54□□□□□ -2
MSX2P35548 LINC02064-201ENST00000506492 470 ntTSL 5 BASIC2.54□□□□□ -2
MSX2P35548 RNU6-1299P-201ENST00000516316 100 ntBASIC2.54□□□□□ -2
MSX2P35548 RNU6-919P-201ENST00000516731 104 ntBASIC2.54□□□□□ -2
MSX2P35548 SNORA48.11-201ENST00000517015 89 ntBASIC2.54□□□□□ -2
MSX2P35548 RNU7-172P-201ENST00000517125 64 ntBASIC2.54□□□□□ -2
MSX2P35548 MIR5004-201ENST00000579078 107 ntBASIC2.54□□□□□ -2
MSX2P35548 MIR4635-201ENST00000583759 79 ntBASIC2.54□□□□□ -2
MSX2P35548 MIR4658-201ENST00000584344 65 ntBASIC2.54□□□□□ -2
MSX2P35548 AC097639.2-201ENST00000603159 172 ntBASIC2.54□□□□□ -2
MSX2P35548 U2.20-201ENST00000613956 192 ntBASIC2.54□□□□□ -2
MSX2P35548 uc_338.4-201ENST00000616635 176 ntBASIC2.54□□□□□ -2
MSX2P35548 OSBPL1A-217ENST00000638614 84 ntTSL 5 BASIC2.54□□□□□ -2
MSX2P35548 NOC3L-201ENST00000371361 3455 ntAPPRIS P1 TSL 1 (best) BASIC2.54□□□□□ -2
MSX2P35548 UHMK1-204ENST00000545294 8117 ntTSL 2 BASIC2.54□□□□□ -2
MSX2P35548 DDIAS-201ENST00000329143 3367 ntAPPRIS P2 TSL 1 (best) BASIC2.53□□□□□ -2
MSX2P35548 ZNF117-204ENST00000620222 5317 ntAPPRIS P1 TSL 1 (best) BASIC2.53□□□□□ -2
MSX2P35548 IDE-201ENST00000265986 5877 ntAPPRIS P1 TSL 1 (best) BASIC2.53□□□□□ -2
MSX2P35548 MIR422A-201ENST00000362286 90 ntBASIC2.53□□□□□ -2
MSX2P35548 RNU6-834P-201ENST00000362367 110 ntBASIC2.53□□□□□ -2
MSX2P35548 Y_RNA.796-201ENST00000364268 102 ntBASIC2.53□□□□□ -2
MSX2P35548 RNU6-1325P-201ENST00000364905 105 ntBASIC2.53□□□□□ -2
MSX2P35548 Y_RNA.799-201ENST00000364992 102 ntBASIC2.53□□□□□ -2
MSX2P35548 Y_RNA.584-201ENST00000391090 114 ntBASIC2.53□□□□□ -2
MSX2P35548 RAB6C-AS1-202ENST00000433431 123 ntBASIC2.53□□□□□ -2
MSX2P35548 CKS1BP2-201ENST00000497342 240 ntBASIC2.53□□□□□ -2
MSX2P35548 RNU6-991P-201ENST00000516168 107 ntBASIC2.53□□□□□ -2
MSX2P35548 RNA5SP153-201ENST00000516498 76 ntBASIC2.53□□□□□ -2
MSX2P35548 AC090142.3-201ENST00000519012 385 ntBASIC2.53□□□□□ -2
MSX2P35548 LINC02277-202ENST00000556472 453 ntTSL 3 BASIC2.53□□□□□ -2
MSX2P35548 RPL23AP91-201ENST00000569211 455 ntBASIC2.53□□□□□ -2
MSX2P35548 AL355297.2-201ENST00000604792 129 ntBASIC2.53□□□□□ -2
MSX2P35548 U6.73-201ENST00000619194 103 ntBASIC2.53□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 200.7 ms