Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 MIR1912-201ENST00000410389 80 ntBASIC3.35□□□□□ -1.87
MSX1P28360 RNU2-48P-201ENST00000410694 191 ntBASIC3.35□□□□□ -1.87
MSX1P28360 AC009238.1-201ENST00000442165 424 ntBASIC3.35□□□□□ -1.87
MSX1P28360 PGBD4P5-201ENST00000445958 426 ntBASIC3.35□□□□□ -1.87
MSX1P28360 AC009237.6-201ENST00000446969 424 ntBASIC3.35□□□□□ -1.87
MSX1P28360 RPL39P25-201ENST00000449384 154 ntBASIC3.35□□□□□ -1.87
MSX1P28360 RNU6-1041P-201ENST00000516254 102 ntBASIC3.35□□□□□ -1.87
MSX1P28360 RN7SKP83-201ENST00000516512 178 ntBASIC3.35□□□□□ -1.87
MSX1P28360 DEFB131E-201ENST00000532329 154 ntBASIC3.35□□□□□ -1.87
MSX1P28360 AC009292.2-201ENST00000558889 291 ntTSL 5 BASIC3.35□□□□□ -1.87
MSX1P28360 MIR4474-201ENST00000579189 78 ntBASIC3.35□□□□□ -1.87
MSX1P28360 MIR4305-201ENST00000583252 102 ntBASIC3.35□□□□□ -1.87
MSX1P28360 AC244205.2-202ENST00000635781 342 ntBASIC3.35□□□□□ -1.87
MSX1P28360 MIR7515-201ENST00000637837 67 ntBASIC3.35□□□□□ -1.87
MSX1P28360 TUG1-202ENST00000521091 2110 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
MSX1P28360 SLC39A10-202ENST00000409086 5432 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
MSX1P28360 TLR10-206ENST00000508334 2616 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
MSX1P28360 ZNF804A-202ENST00000613975 3986 ntTSL 5 BASIC3.35□□□□□ -1.87
MSX1P28360 AL445259.1-201ENST00000587106 2984 ntTSL 5 BASIC3.34□□□□□ -1.87
MSX1P28360 IBTK-209ENST00000510291 4109 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
MSX1P28360 LRRD1-203ENST00000430130 2661 ntAPPRIS P1 TSL 5 BASIC3.34□□□□□ -1.87
MSX1P28360 MIR494-201ENST00000349529 81 ntBASIC3.34□□□□□ -1.87
MSX1P28360 RNU6-268P-201ENST00000364174 107 ntBASIC3.34□□□□□ -1.87
MSX1P28360 RNU4-36P-201ENST00000364294 144 ntBASIC3.34□□□□□ -1.87
MSX1P28360 RNU6-1134P-201ENST00000365156 101 ntBASIC3.34□□□□□ -1.87
MSX1P28360 Y_RNA.440-201ENST00000384120 114 ntBASIC3.34□□□□□ -1.87
MSX1P28360 Z92545.1-201ENST00000411782 234 ntBASIC3.34□□□□□ -1.87
MSX1P28360 ATP5A1P2-201ENST00000412323 255 ntBASIC3.34□□□□□ -1.87
MSX1P28360 AC006989.1-201ENST00000427212 131 ntBASIC3.34□□□□□ -1.87
MSX1P28360 AL445646.1-201ENST00000431784 216 ntBASIC3.34□□□□□ -1.87
MSX1P28360 SNORD105B-201ENST00000458770 79 ntBASIC3.34□□□□□ -1.87
MSX1P28360 SNORD36C-201ENST00000516733 66 ntBASIC3.34□□□□□ -1.87
MSX1P28360 RNU6-579P-201ENST00000516879 102 ntBASIC3.34□□□□□ -1.87
MSX1P28360 SNORA48.11-201ENST00000517015 89 ntBASIC3.34□□□□□ -1.87
MSX1P28360 NCRNA00250-201ENST00000519500 519 ntTSL 4 BASIC3.34□□□□□ -1.87
MSX1P28360 AC022523.2-201ENST00000561045 150 ntBASIC3.34□□□□□ -1.87
MSX1P28360 MIR3683-201ENST00000580847 82 ntBASIC3.34□□□□□ -1.87
MSX1P28360 MIR3922-201ENST00000585192 84 ntBASIC3.34□□□□□ -1.87
MSX1P28360 MIR4762-201ENST00000585261 75 ntBASIC3.34□□□□□ -1.87
MSX1P28360 AL353149.1-201ENST00000610667 244 ntBASIC3.34□□□□□ -1.87
MSX1P28360 AL590808.1-201ENST00000618696 141 ntBASIC3.34□□□□□ -1.87
MSX1P28360 Clostridiales-1.3-201ENST00000637703 147 ntBASIC3.34□□□□□ -1.87
MSX1P28360 SLC8A1-207ENST00000406785 20987 ntTSL 1 (best) BASIC3.34□□□□□ -1.88
MSX1P28360 KCNJ16-209ENST00000589377 3684 ntAPPRIS P1 TSL 5 BASIC3.34□□□□□ -1.88
MSX1P28360 DAZ4-201ENST00000382296 2048 ntAPPRIS P5 TSL 5 BASIC3.34□□□□□ -1.88
MSX1P28360 LRRN3-203ENST00000422987 3513 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
MSX1P28360 FIGNL1-203ENST00000419119 3700 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
MSX1P28360 RBBP8-202ENST00000360790 2962 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
MSX1P28360 SNORD68-201ENST00000363214 84 ntBASIC3.33□□□□□ -1.88
MSX1P28360 Y_RNA.466-201ENST00000384294 113 ntBASIC3.33□□□□□ -1.88
MSX1P28360 RNVU1-14-201ENST00000384770 164 ntBASIC3.33□□□□□ -1.88
MSX1P28360 MIR634-201ENST00000385208 97 ntBASIC3.33□□□□□ -1.88
MSX1P28360 SNORD78.1-201ENST00000390866 65 ntBASIC3.33□□□□□ -1.88
MSX1P28360 NDUFB4P4-201ENST00000404822 243 ntBASIC3.33□□□□□ -1.88
MSX1P28360 SNRPGP14-201ENST00000435400 219 ntBASIC3.33□□□□□ -1.88
MSX1P28360 AL357552.1-201ENST00000445254 415 ntBASIC3.33□□□□□ -1.88
MSX1P28360 AC109327.2-201ENST00000448339 378 ntBASIC3.33□□□□□ -1.88
MSX1P28360 CYCSP35-201ENST00000451978 304 ntBASIC3.33□□□□□ -1.88
MSX1P28360 RNU7-94P-201ENST00000459576 63 ntBASIC3.33□□□□□ -1.88
MSX1P28360 AL356280.1-201ENST00000603614 379 ntBASIC3.33□□□□□ -1.88
MSX1P28360 PCNP-208ENST00000627393 136 ntTSL 2 BASIC3.33□□□□□ -1.88
MSX1P28360 DMD-201ENST00000288447 3856 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
MSX1P28360 KIAA1841-211ENST00000612149 4202 ntTSL 5 BASIC3.33□□□□□ -1.88
MSX1P28360 KIAA1109-203ENST00000388738 15574 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
MSX1P28360 ZBTB20-201ENST00000357258 27125 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
MSX1P28360 RAD17-206ENST00000358030 2648 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
MSX1P28360 RNU6-1084P-201ENST00000362498 107 ntBASIC3.32□□□□□ -1.88
MSX1P28360 RNU1-18P-201ENST00000363062 164 ntBASIC3.32□□□□□ -1.88
MSX1P28360 RNA5SP51-201ENST00000364750 119 ntBASIC3.32□□□□□ -1.88
MSX1P28360 RNU6-816P-201ENST00000390914 107 ntBASIC3.32□□□□□ -1.88
MSX1P28360 RNA5SP323-201ENST00000391094 133 ntBASIC3.32□□□□□ -1.88
MSX1P28360 RNU6-1268P-201ENST00000391214 107 ntBASIC3.32□□□□□ -1.88
MSX1P28360 RNU6-1239P-201ENST00000391310 107 ntBASIC3.32□□□□□ -1.88
MSX1P28360 RNU6-938P-201ENST00000411285 103 ntBASIC3.32□□□□□ -1.88
MSX1P28360 U3.44-201ENST00000458938 192 ntBASIC3.32□□□□□ -1.88
MSX1P28360 SNORA59A-201ENST00000459326 152 ntBASIC3.32□□□□□ -1.88
MSX1P28360 RNU7-80P-201ENST00000459562 61 ntBASIC3.32□□□□□ -1.88
MSX1P28360 SCARNA23-201ENST00000516060 130 ntBASIC3.32□□□□□ -1.88
MSX1P28360 AC008011.1-201ENST00000545989 227 ntBASIC3.32□□□□□ -1.88
MSX1P28360 MIR4778-201ENST00000577635 80 ntBASIC3.32□□□□□ -1.88
MSX1P28360 C5orf51-201ENST00000381647 5241 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
MSX1P28360 FOXP2-206ENST00000393491 6085 ntTSL 5 BASIC3.32□□□□□ -1.88
MSX1P28360 MME-216ENST00000615825 5523 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
MSX1P28360 RXFP1-205ENST00000448688 3861 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
MSX1P28360 WWP1-201ENST00000265428 3362 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
MSX1P28360 USP33-201ENST00000357428 4155 ntTSL 5 BASIC3.31□□□□□ -1.88
MSX1P28360 U8.5-201ENST00000364528 136 ntBASIC3.31□□□□□ -1.88
MSX1P28360 Y_RNA.351-201ENST00000365436 96 ntBASIC3.31□□□□□ -1.88
MSX1P28360 AC245052.1-201ENST00000426213 410 ntTSL 3 BASIC3.31□□□□□ -1.88
MSX1P28360 AL583835.2-201ENST00000435483 500 ntTSL 2 BASIC3.31□□□□□ -1.88
MSX1P28360 LINC02041-201ENST00000440726 246 ntTSL 5 BASIC3.31□□□□□ -1.88
MSX1P28360 RNU6-893P-201ENST00000458841 100 ntBASIC3.31□□□□□ -1.88
MSX1P28360 LINC02514-201ENST00000509058 498 ntTSL 3 BASIC3.31□□□□□ -1.88
MSX1P28360 AC007598.1-202ENST00000561528 435 ntTSL 3 BASIC3.31□□□□□ -1.88
MSX1P28360 AP003355.3-201ENST00000623465 114 ntBASIC3.31□□□□□ -1.88
MSX1P28360 LPP-220ENST00000617246 18220 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
MSX1P28360 FAP-201ENST00000188790 2780 ntAPPRIS P2 TSL 1 (best) BASIC3.3□□□□□ -1.88
MSX1P28360 SKIL-203ENST00000426052 2757 ntTSL 2 BASIC3.3□□□□□ -1.88
MSX1P28360 RNY3P2-201ENST00000362918 102 ntBASIC3.3□□□□□ -1.88
MSX1P28360 RNY1P10-201ENST00000363268 113 ntBASIC3.3□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 163.3 ms