Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 RNU6-455P-201ENST00000384681 107 ntBASIC-1.65□□□□□ -2.67
HMGA1P17096 SNORD64-201ENST00000386683 67 ntBASIC-1.65□□□□□ -2.67
HMGA1P17096 TRAJ34-201ENST00000390503 58 ntAPPRIS P1 BASIC-1.65□□□□□ -2.67
HMGA1P17096 RNU6-1199P-201ENST00000411249 104 ntBASIC-1.65□□□□□ -2.67
HMGA1P17096 AC003659.1-201ENST00000424251 465 ntTSL 5 BASIC-1.65□□□□□ -2.67
HMGA1P17096 AP000542.1-201ENST00000448473 371 ntBASIC-1.65□□□□□ -2.67
HMGA1P17096 SNORA13-201ENST00000458790 133 ntBASIC-1.65□□□□□ -2.67
HMGA1P17096 AC010486.3-201ENST00000511602 785 ntBASIC-1.65□□□□□ -2.67
HMGA1P17096 MTND4P33-201ENST00000556706 766 ntBASIC-1.65□□□□□ -2.67
HMGA1P17096 MIR5591-201ENST00000578248 65 ntBASIC-1.65□□□□□ -2.67
HMGA1P17096 AC099785.1-201ENST00000605697 437 ntBASIC-1.65□□□□□ -2.67
HMGA1P17096 SNORA43.4-201ENST00000629559 138 ntBASIC-1.65□□□□□ -2.67
HMGA1P17096 RNU6-502P-201ENST00000362419 108 ntBASIC-1.66□□□□□ -2.68
HMGA1P17096 Y_RNA.232-201ENST00000364369 96 ntBASIC-1.66□□□□□ -2.68
HMGA1P17096 RNU4-28P-201ENST00000364739 141 ntBASIC-1.66□□□□□ -2.68
HMGA1P17096 RNU6-431P-201ENST00000383874 107 ntBASIC-1.66□□□□□ -2.68
HMGA1P17096 SNORA1-201ENST00000384107 130 ntBASIC-1.66□□□□□ -2.68
HMGA1P17096 MIR518F-201ENST00000384973 87 ntBASIC-1.66□□□□□ -2.68
HMGA1P17096 AL355314.2-201ENST00000427182 436 ntTSL 3 BASIC-1.66□□□□□ -2.68
HMGA1P17096 AL035258.1-201ENST00000439450 439 ntTSL 3 BASIC-1.66□□□□□ -2.68
HMGA1P17096 AC008628.2-201ENST00000502605 298 ntBASIC-1.66□□□□□ -2.68
HMGA1P17096 CCDC7-207ENST00000535327 700 ntAPPRIS ALT2 TSL 1 (best) BASIC-1.66□□□□□ -2.68
HMGA1P17096 AP000907.4-201ENST00000604143 237 ntBASIC-1.66□□□□□ -2.68
HMGA1P17096 AP000942.4-201ENST00000604811 241 ntBASIC-1.66□□□□□ -2.68
HMGA1P17096 RNU6-86P-201ENST00000606534 107 ntBASIC-1.66□□□□□ -2.68
HMGA1P17096 AC010205.1-201ENST00000616668 449 ntBASIC-1.66□□□□□ -2.68
HMGA1P17096 MIR6740-201ENST00000618268 113 ntBASIC-1.66□□□□□ -2.68
HMGA1P17096 AC005609.4-201ENST00000625071 447 ntBASIC-1.66□□□□□ -2.68
HMGA1P17096 RNU6-1244P-201ENST00000363614 108 ntBASIC-1.67□□□□□ -2.68
HMGA1P17096 RNY4P6-201ENST00000363667 96 ntBASIC-1.67□□□□□ -2.68
HMGA1P17096 AC117470.1-201ENST00000381974 330 ntBASIC-1.67□□□□□ -2.68
HMGA1P17096 SNORA22B-201ENST00000383876 138 ntBASIC-1.67□□□□□ -2.68
HMGA1P17096 MIR516B1-201ENST00000385211 90 ntBASIC-1.67□□□□□ -2.68
HMGA1P17096 AL031779.1-201ENST00000415663 330 ntBASIC-1.67□□□□□ -2.68
HMGA1P17096 AC079760.1-201ENST00000456952 202 ntTSL 3 BASIC-1.67□□□□□ -2.68
HMGA1P17096 AC091959.1-201ENST00000495857 238 ntBASIC-1.67□□□□□ -2.68
HMGA1P17096 RNU7-172P-201ENST00000517125 64 ntBASIC-1.67□□□□□ -2.68
HMGA1P17096 LINC02267-202ENST00000522173 799 ntTSL 3 BASIC-1.67□□□□□ -2.68
HMGA1P17096 AL589935.1-202ENST00000612512 393 ntTSL 5 BASIC-1.67□□□□□ -2.68
HMGA1P17096 Y_RNA.283-201ENST00000364798 112 ntBASIC-1.68□□□□□ -2.68
HMGA1P17096 Y_RNA.442-201ENST00000384131 102 ntBASIC-1.68□□□□□ -2.68
HMGA1P17096 Y_RNA.497-201ENST00000384447 98 ntBASIC-1.68□□□□□ -2.68
HMGA1P17096 CALM2P2-201ENST00000428512 440 ntBASIC-1.68□□□□□ -2.68
HMGA1P17096 AC063944.1-201ENST00000496943 295 ntTSL 3 BASIC-1.68□□□□□ -2.68
HMGA1P17096 MTND3P25-201ENST00000509243 135 ntBASIC-1.68□□□□□ -2.68
HMGA1P17096 RNU6-475P-201ENST00000516073 104 ntBASIC-1.68□□□□□ -2.68
HMGA1P17096 Y_RNA.674-201ENST00000516362 113 ntBASIC-1.68□□□□□ -2.68
HMGA1P17096 AC091178.2-201ENST00000584401 117 ntBASIC-1.68□□□□□ -2.68
HMGA1P17096 MIR4723-201ENST00000585070 81 ntBASIC-1.68□□□□□ -2.68
HMGA1P17096 uc_338.4-201ENST00000616635 176 ntBASIC-1.68□□□□□ -2.68
HMGA1P17096 AL157770.1-201ENST00000623049 439 ntBASIC-1.68□□□□□ -2.68
HMGA1P17096 AC008873.1-201ENST00000625051 138 ntBASIC-1.68□□□□□ -2.68
HMGA1P17096 Y_RNA.128-201ENST00000363391 112 ntBASIC-1.69□□□□□ -2.68
HMGA1P17096 SNORD51.1-201ENST00000365405 77 ntBASIC-1.69□□□□□ -2.68
HMGA1P17096 RNU6-481P-201ENST00000384194 107 ntBASIC-1.69□□□□□ -2.68
HMGA1P17096 Y_RNA.480-201ENST00000384364 102 ntBASIC-1.69□□□□□ -2.68
HMGA1P17096 AC090844.1-201ENST00000422019 156 ntBASIC-1.69□□□□□ -2.68
HMGA1P17096 AL354994.1-201ENST00000445967 194 ntTSL 5 BASIC-1.69□□□□□ -2.68
HMGA1P17096 RNU6-430P-201ENST00000517078 107 ntBASIC-1.69□□□□□ -2.68
HMGA1P17096 AC134698.4-201ENST00000523451 826 ntBASIC-1.69□□□□□ -2.68
HMGA1P17096 SMAD5-AS1_4.1-201ENST00000615561 167 ntBASIC-1.69□□□□□ -2.68
HMGA1P17096 MIR6129-201ENST00000616087 109 ntBASIC-1.69□□□□□ -2.68
HMGA1P17096 AC010608.3-201ENST00000625048 527 ntBASIC-1.69□□□□□ -2.68
HMGA1P17096 SNORD115-44-201ENST00000365391 82 ntBASIC-1.7□□□□□ -2.68
HMGA1P17096 SNORA51.10-201ENST00000384418 136 ntBASIC-1.7□□□□□ -2.68
HMGA1P17096 ELOCP17-201ENST00000414751 326 ntBASIC-1.7□□□□□ -2.68
HMGA1P17096 LINC02541-201ENST00000427157 327 ntTSL 3 BASIC-1.7□□□□□ -2.68
HMGA1P17096 SNAP23P1-201ENST00000433229 246 ntBASIC-1.7□□□□□ -2.68
HMGA1P17096 SNORD38.3-201ENST00000516599 73 ntBASIC-1.7□□□□□ -2.68
HMGA1P17096 MIR4789-201ENST00000577469 82 ntBASIC-1.7□□□□□ -2.68
HMGA1P17096 MTATP6P2-201ENST00000603319 678 ntBASIC-1.7□□□□□ -2.68
HMGA1P17096 AL359999.1-201ENST00000604513 294 ntBASIC-1.7□□□□□ -2.68
HMGA1P17096 AP001330.5-201ENST00000607176 411 ntBASIC-1.7□□□□□ -2.68
HMGA1P17096 AC022306.3-201ENST00000619930 550 ntBASIC-1.7□□□□□ -2.68
HMGA1P17096 MTND1P7-201ENST00000632801 297 ntBASIC-1.7□□□□□ -2.68
HMGA1P17096 ZNF299P-201ENST00000406845 1804 ntBASIC-1.7□□□□□ -2.68
HMGA1P17096 MTND5P18-201ENST00000445624 1801 ntBASIC-1.7□□□□□ -2.68
HMGA1P17096 Y_RNA.42-201ENST00000362660 108 ntBASIC-1.71□□□□□ -2.68
HMGA1P17096 RNU6-376P-201ENST00000384731 106 ntBASIC-1.71□□□□□ -2.68
HMGA1P17096 MIR517B-201ENST00000385102 67 ntBASIC-1.71□□□□□ -2.68
HMGA1P17096 RNY4P36-201ENST00000391116 96 ntBASIC-1.71□□□□□ -2.68
HMGA1P17096 MIR1207-201ENST00000408249 87 ntBASIC-1.71□□□□□ -2.68
HMGA1P17096 SSR1P2-201ENST00000415208 787 ntBASIC-1.71□□□□□ -2.68
HMGA1P17096 AC119618.1-201ENST00000434191 222 ntBASIC-1.71□□□□□ -2.68
HMGA1P17096 EPS15P1-201ENST00000448836 336 ntBASIC-1.71□□□□□ -2.68
HMGA1P17096 PTPRG-AS1-202ENST00000466893 823 ntTSL 4 BASIC-1.71□□□□□ -2.68
HMGA1P17096 AC130371.1-204ENST00000576197 401 ntTSL 3 BASIC-1.71□□□□□ -2.68
HMGA1P17096 MIR4770-201ENST00000579149 58 ntBASIC-1.71□□□□□ -2.68
HMGA1P17096 AC132825.6-201ENST00000638861 357 ntBASIC-1.71□□□□□ -2.68
HMGA1P17096 MTND5P17-201ENST00000418405 1603 ntBASIC-1.72□□□□□ -2.68
HMGA1P17096 RNY4P27-201ENST00000363341 96 ntBASIC-1.72□□□□□ -2.68
HMGA1P17096 RNU5E-6P-201ENST00000365574 115 ntBASIC-1.72□□□□□ -2.68
HMGA1P17096 RNA5SP475-201ENST00000410568 110 ntBASIC-1.72□□□□□ -2.68
HMGA1P17096 ZNF736P8Y-201ENST00000451913 669 ntBASIC-1.72□□□□□ -2.68
HMGA1P17096 AL138752.1-201ENST00000452964 351 ntBASIC-1.72□□□□□ -2.68
HMGA1P17096 AL358944.1-201ENST00000528537 144 ntBASIC-1.72□□□□□ -2.68
HMGA1P17096 AC108747.1-201ENST00000609508 535 ntBASIC-1.72□□□□□ -2.68
HMGA1P17096 MIR6851-201ENST00000617060 67 ntBASIC-1.72□□□□□ -2.68
HMGA1P17096 MIR8066-201ENST00000617280 78 ntBASIC-1.72□□□□□ -2.68
HMGA1P17096 Y_RNA.125-201ENST00000363371 111 ntBASIC-1.73□□□□□ -2.69
Retrieved 100 of 98,524 protein–RNA pairs in 108.9 ms