Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 AL031274.2-201ENST00000599419 203 ntBASIC2.01□□□□□ -2.09
LDB3O75112 AC013791.1-201ENST00000616619 62 ntBASIC2.01□□□□□ -2.09
LDB3O75112 KNL1-204ENST00000527044 5404 ntTSL 5 BASIC2.01□□□□□ -2.09
LDB3O75112 SEMG2-201ENST00000372769 2051 ntAPPRIS P1 TSL 1 (best) BASIC2.01□□□□□ -2.09
LDB3O75112 KPNA5-202ENST00000368564 11311 ntAPPRIS P1 TSL 1 (best) BASIC2.01□□□□□ -2.09
LDB3O75112 SLITRK6-201ENST00000400286 4318 ntAPPRIS P1 TSL 1 (best) BASIC2.01□□□□□ -2.09
LDB3O75112 HAS2-201ENST00000303924 4190 ntAPPRIS P1 TSL 1 (best) BASIC2.01□□□□□ -2.09
LDB3O75112 SLC39A10-201ENST00000359634 5322 ntAPPRIS P1 TSL 1 (best) BASIC2□□□□□ -2.09
LDB3O75112 SMARCAD1-201ENST00000354268 4912 ntAPPRIS P3 TSL 1 (best) BASIC2□□□□□ -2.09
LDB3O75112 CLLU1-201ENST00000378485 3897 ntAPPRIS P1 TSL 1 (best) BASIC2□□□□□ -2.09
LDB3O75112 Y_RNA.238-201ENST00000364441 102 ntBASIC2□□□□□ -2.09
LDB3O75112 RNU6-418P-201ENST00000384035 107 ntBASIC2□□□□□ -2.09
LDB3O75112 SNORA20B-201ENST00000384220 132 ntBASIC2□□□□□ -2.09
LDB3O75112 SNORA48.3-201ENST00000391081 134 ntBASIC2□□□□□ -2.09
LDB3O75112 RNU6-381P-201ENST00000391259 108 ntBASIC2□□□□□ -2.09
LDB3O75112 AL023284.1-201ENST00000403956 276 ntBASIC2□□□□□ -2.09
LDB3O75112 AL121890.1-201ENST00000435457 205 ntBASIC2□□□□□ -2.09
LDB3O75112 AC245102.2-201ENST00000448956 180 ntBASIC2□□□□□ -2.09
LDB3O75112 RNU7-57P-201ENST00000459540 60 ntBASIC2□□□□□ -2.09
LDB3O75112 RNU2-34P-201ENST00000516534 121 ntBASIC2□□□□□ -2.09
LDB3O75112 AP005660.1-201ENST00000522972 293 ntBASIC2□□□□□ -2.09
LDB3O75112 AC027419.1-201ENST00000522976 328 ntBASIC2□□□□□ -2.09
LDB3O75112 Six3os1_7.1-201ENST00000621512 201 ntBASIC2□□□□□ -2.09
LDB3O75112 AC011124.2-201ENST00000518739 3222 ntTSL 1 (best) BASIC1.99□□□□□ -2.09
LDB3O75112 FABP12-201ENST00000360464 551 ntAPPRIS P1 TSL 1 (best) BASIC1.99□□□□□ -2.09
LDB3O75112 Y_RNA.7-201ENST00000362352 102 ntBASIC1.99□□□□□ -2.09
LDB3O75112 Y_RNA.99-201ENST00000363138 105 ntBASIC1.99□□□□□ -2.09
LDB3O75112 Y_RNA.182-201ENST00000363880 111 ntBASIC1.99□□□□□ -2.09
LDB3O75112 Y_RNA.341-201ENST00000365341 102 ntBASIC1.99□□□□□ -2.09
LDB3O75112 Y_RNA.368-201ENST00000365547 113 ntBASIC1.99□□□□□ -2.09
LDB3O75112 RNU4-17P-201ENST00000365598 141 ntBASIC1.99□□□□□ -2.09
LDB3O75112 Y_RNA.441-201ENST00000384123 112 ntBASIC1.99□□□□□ -2.09
LDB3O75112 RNU6-301P-201ENST00000384277 107 ntBASIC1.99□□□□□ -2.09
LDB3O75112 SNORA67.3-201ENST00000384366 140 ntBASIC1.99□□□□□ -2.09
LDB3O75112 SNORA64-201ENST00000384674 134 ntBASIC1.99□□□□□ -2.09
LDB3O75112 HMGN2P39-201ENST00000398005 273 ntBASIC1.99□□□□□ -2.09
LDB3O75112 RNU6ATAC37P-201ENST00000408328 131 ntBASIC1.99□□□□□ -2.09
LDB3O75112 AC016909.1-201ENST00000415916 166 ntBASIC1.99□□□□□ -2.09
LDB3O75112 SEPT7P4-201ENST00000437076 306 ntBASIC1.99□□□□□ -2.09
LDB3O75112 TRAPPC2P7-201ENST00000509650 231 ntBASIC1.99□□□□□ -2.09
LDB3O75112 RNU6-63P-201ENST00000516690 95 ntBASIC1.99□□□□□ -2.09
LDB3O75112 AC016885.2-201ENST00000522598 261 ntTSL 3 BASIC1.99□□□□□ -2.09
LDB3O75112 AC091965.1-202ENST00000607662 397 ntTSL 3 BASIC1.99□□□□□ -2.09
LDB3O75112 AC004832.4-201ENST00000608952 331 ntBASIC1.99□□□□□ -2.09
LDB3O75112 AL078604.3-201ENST00000615580 211 ntBASIC1.99□□□□□ -2.09
LDB3O75112 PTPRQ-208ENST00000614701 8289 ntAPPRIS P1 TSL 5 BASIC1.98□□□□□ -2.09
LDB3O75112 TAB2-205ENST00000538427 4240 ntAPPRIS P1 TSL 5 BASIC1.98□□□□□ -2.09
LDB3O75112 Y_RNA.24-201ENST00000362508 103 ntBASIC1.98□□□□□ -2.09
LDB3O75112 U8.2-201ENST00000363156 134 ntBASIC1.98□□□□□ -2.09
LDB3O75112 Y_RNA.272-201ENST00000364696 102 ntBASIC1.98□□□□□ -2.09
LDB3O75112 U8.7-201ENST00000364940 136 ntBASIC1.98□□□□□ -2.09
LDB3O75112 SNORD116-18-201ENST00000383961 92 ntBASIC1.98□□□□□ -2.09
LDB3O75112 RNU6-1235P-201ENST00000384559 107 ntBASIC1.98□□□□□ -2.09
LDB3O75112 SNORA40.19-201ENST00000390846 128 ntBASIC1.98□□□□□ -2.09
LDB3O75112 RN7SKP284-201ENST00000411002 343 ntBASIC1.98□□□□□ -2.09
LDB3O75112 RNU6-57P-201ENST00000411348 103 ntBASIC1.98□□□□□ -2.09
LDB3O75112 MTCO1P44-201ENST00000441935 243 ntBASIC1.98□□□□□ -2.09
LDB3O75112 AL357134.1-201ENST00000445848 426 ntBASIC1.98□□□□□ -2.09
LDB3O75112 LINC02534-201ENST00000446525 283 ntTSL 3 BASIC1.98□□□□□ -2.09
LDB3O75112 SNORD65B-201ENST00000459126 73 ntBASIC1.98□□□□□ -2.09
LDB3O75112 RNU6-498P-201ENST00000459468 107 ntBASIC1.98□□□□□ -2.09
LDB3O75112 AC055733.2-201ENST00000504737 340 ntTSL 2 BASIC1.98□□□□□ -2.09
LDB3O75112 LINC02276-201ENST00000508388 138 ntTSL 3 BASIC1.98□□□□□ -2.09
LDB3O75112 RNA5SP272-201ENST00000516095 111 ntBASIC1.98□□□□□ -2.09
LDB3O75112 RNU6-1337P-201ENST00000516525 95 ntBASIC1.98□□□□□ -2.09
LDB3O75112 RNU6-789P-201ENST00000517105 102 ntBASIC1.98□□□□□ -2.09
LDB3O75112 MIR4529-201ENST00000578110 78 ntBASIC1.98□□□□□ -2.09
LDB3O75112 MIR5002-201ENST00000584713 97 ntBASIC1.98□□□□□ -2.09
LDB3O75112 snoZ196.1-201ENST00000625269 89 ntBASIC1.98□□□□□ -2.09
LDB3O75112 MIR203B-201ENST00000636080 86 ntBASIC1.98□□□□□ -2.09
LDB3O75112 ZDBF2-202ENST00000611847 9890 ntTSL 5 BASIC1.98□□□□□ -2.09
LDB3O75112 AP006437.1-201ENST00000641440 3685 ntBASIC1.98□□□□□ -2.09
LDB3O75112 MIR340-201ENST00000362125 95 ntBASIC1.97□□□□□ -2.09
LDB3O75112 Y_RNA.287-201ENST00000364853 94 ntBASIC1.97□□□□□ -2.09
LDB3O75112 Y_RNA.293-201ENST00000364908 93 ntBASIC1.97□□□□□ -2.09
LDB3O75112 RNY1P5-201ENST00000383890 115 ntBASIC1.97□□□□□ -2.09
LDB3O75112 MIR626-201ENST00000385032 94 ntBASIC1.97□□□□□ -2.09
LDB3O75112 MT-TT-201ENST00000387460 66 ntBASIC1.97□□□□□ -2.09
LDB3O75112 RNU6-1248P-201ENST00000391096 64 ntBASIC1.97□□□□□ -2.09
LDB3O75112 MIR1262-201ENST00000408276 93 ntBASIC1.97□□□□□ -2.09
LDB3O75112 RNU6-383P-201ENST00000410864 94 ntBASIC1.97□□□□□ -2.09
LDB3O75112 AL358234.1-201ENST00000421132 273 ntTSL 5 BASIC1.97□□□□□ -2.09
LDB3O75112 RPL23AP7-203ENST00000449021 469 ntBASIC1.97□□□□□ -2.09
LDB3O75112 RPS20P10-201ENST00000451209 253 ntBASIC1.97□□□□□ -2.09
LDB3O75112 AC010531.2-201ENST00000465012 153 ntBASIC1.97□□□□□ -2.09
LDB3O75112 AC117454.1-201ENST00000491120 168 ntBASIC1.97□□□□□ -2.09
LDB3O75112 AC008852.1-201ENST00000510198 451 ntTSL 2 BASIC1.97□□□□□ -2.09
LDB3O75112 RNU6-561P-201ENST00000516222 102 ntBASIC1.97□□□□□ -2.09
LDB3O75112 AC087362.2-201ENST00000529325 256 ntTSL 3 BASIC1.97□□□□□ -2.09
LDB3O75112 AP003097.2-201ENST00000530126 178 ntTSL 3 BASIC1.97□□□□□ -2.09
LDB3O75112 AC012435.2-201ENST00000562869 361 ntTSL 3 BASIC1.97□□□□□ -2.09
LDB3O75112 AC078899.2-201ENST00000595282 212 ntBASIC1.97□□□□□ -2.09
LDB3O75112 RBMS2-209ENST00000639027 192 ntTSL 5 BASIC1.97□□□□□ -2.09
LDB3O75112 MIER3-202ENST00000381199 5188 ntAPPRIS ALT1 TSL 1 (best) BASIC1.97□□□□□ -2.09
LDB3O75112 CEP57-213ENST00000541150 2911 ntAPPRIS ALT2 TSL 5 BASIC1.97□□□□□ -2.09
LDB3O75112 SCN7A-201ENST00000409855 7183 ntAPPRIS P1 TSL 1 (best) BASIC1.97□□□□□ -2.09
LDB3O75112 ZNF644-212ENST00000621077 2056 ntTSL 5 BASIC1.96□□□□□ -2.1
LDB3O75112 AL356292.1-201ENST00000283110 373 ntBASIC1.96□□□□□ -2.1
LDB3O75112 MT-ATP8-201ENST00000361851 207 ntAPPRIS P1 BASIC1.96□□□□□ -2.1
LDB3O75112 RNU6-969P-201ENST00000383900 105 ntBASIC1.96□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 111.2 ms