Protein–RNA interactions for Protein: A0A0B4J280

TRAV40, T-cell receptor alpha variable 40 (Fragment), humanhuman

Predictions only

Length 105 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV40A0A0B4J280 C8orf59P2-201ENST00000603441 271 ntBASIC0.92□□□□□ -2.26
TRAV40A0A0B4J280 AL050343.2-201ENST00000607338 280 ntBASIC0.92□□□□□ -2.26
TRAV40A0A0B4J280 Z84484.1-202ENST00000612718 60 ntTSL 5 BASIC0.92□□□□□ -2.26
TRAV40A0A0B4J280 5S_rRNA.13-201ENST00000622298 123 ntBASIC0.92□□□□□ -2.26
TRAV40A0A0B4J280 AC106754.2-201ENST00000623006 233 ntBASIC0.92□□□□□ -2.26
TRAV40A0A0B4J280 TTK-211ENST00000627129 240 ntTSL 5 BASIC0.92□□□□□ -2.26
TRAV40A0A0B4J280 LINC01359-207ENST00000634799 487 ntTSL 5 BASIC0.92□□□□□ -2.26
TRAV40A0A0B4J280 MIR6079-201ENST00000635807 62 ntBASIC0.92□□□□□ -2.26
TRAV40A0A0B4J280 SNORA1B-201ENST00000362535 133 ntBASIC0.91□□□□□ -2.26
TRAV40A0A0B4J280 Y_RNA.118-201ENST00000363300 101 ntBASIC0.91□□□□□ -2.26
TRAV40A0A0B4J280 SNORA72.2-201ENST00000365028 127 ntBASIC0.91□□□□□ -2.26
TRAV40A0A0B4J280 MIR934-201ENST00000401241 83 ntBASIC0.91□□□□□ -2.26
TRAV40A0A0B4J280 MRPL42P3-201ENST00000401492 326 ntBASIC0.91□□□□□ -2.26
TRAV40A0A0B4J280 RNU6-130P-201ENST00000411112 103 ntBASIC0.91□□□□□ -2.26
TRAV40A0A0B4J280 AL589935.1-209ENST00000432050 418 ntTSL 5 BASIC0.91□□□□□ -2.26
TRAV40A0A0B4J280 AL160004.2-201ENST00000432935 350 ntBASIC0.91□□□□□ -2.26
TRAV40A0A0B4J280 AC093850.1-201ENST00000454121 251 ntBASIC0.91□□□□□ -2.26
TRAV40A0A0B4J280 SNORA25.10-201ENST00000515926 124 ntBASIC0.91□□□□□ -2.26
TRAV40A0A0B4J280 RNA5SP481-201ENST00000516814 122 ntBASIC0.91□□□□□ -2.26
TRAV40A0A0B4J280 RNU7-4P-201ENST00000516961 62 ntBASIC0.91□□□□□ -2.26
TRAV40A0A0B4J280 SNORD116.3-201ENST00000517176 78 ntBASIC0.91□□□□□ -2.26
TRAV40A0A0B4J280 AC144568.1-201ENST00000520139 137 ntBASIC0.91□□□□□ -2.26
TRAV40A0A0B4J280 AP001485.1-201ENST00000604799 199 ntBASIC0.91□□□□□ -2.26
TRAV40A0A0B4J280 PART1_1.1-201ENST00000611761 217 ntBASIC0.91□□□□□ -2.26
TRAV40A0A0B4J280 uc_338.22-201ENST00000622722 187 ntBASIC0.91□□□□□ -2.26
TRAV40A0A0B4J280 MIR96-201ENST00000362288 78 ntBASIC0.9□□□□□ -2.27
TRAV40A0A0B4J280 SNORD81.1-201ENST00000363064 77 ntBASIC0.9□□□□□ -2.27
TRAV40A0A0B4J280 Y_RNA.116-201ENST00000363292 103 ntBASIC0.9□□□□□ -2.27
TRAV40A0A0B4J280 RNU5F-3P-201ENST00000363767 117 ntBASIC0.9□□□□□ -2.27
TRAV40A0A0B4J280 RNU5E-4P-201ENST00000364931 120 ntBASIC0.9□□□□□ -2.27
TRAV40A0A0B4J280 RNU6-867P-201ENST00000364956 107 ntBASIC0.9□□□□□ -2.27
TRAV40A0A0B4J280 Y_RNA.361-201ENST00000365515 120 ntBASIC0.9□□□□□ -2.27
TRAV40A0A0B4J280 Y_RNA.428-201ENST00000384078 102 ntBASIC0.9□□□□□ -2.27
TRAV40A0A0B4J280 Y_RNA.446-201ENST00000384178 104 ntBASIC0.9□□□□□ -2.27
TRAV40A0A0B4J280 Y_RNA.458-201ENST00000384240 102 ntBASIC0.9□□□□□ -2.27
TRAV40A0A0B4J280 RNU6-474P-201ENST00000384243 107 ntBASIC0.9□□□□□ -2.27
TRAV40A0A0B4J280 RNU6-505P-201ENST00000384427 107 ntBASIC0.9□□□□□ -2.27
TRAV40A0A0B4J280 MIR513A1-201ENST00000385138 129 ntBASIC0.9□□□□□ -2.27
TRAV40A0A0B4J280 U8.16-201ENST00000391279 133 ntBASIC0.9□□□□□ -2.27
TRAV40A0A0B4J280 AL031003.1-201ENST00000404229 172 ntBASIC0.9□□□□□ -2.27
TRAV40A0A0B4J280 AC027119.1-201ENST00000440877 241 ntBASIC0.9□□□□□ -2.27
TRAV40A0A0B4J280 RNU6-1337P-201ENST00000516525 95 ntBASIC0.9□□□□□ -2.27
TRAV40A0A0B4J280 AL356133.2-201ENST00000521572 371 ntTSL 3 BASIC0.9□□□□□ -2.27
TRAV40A0A0B4J280 CARD18-203ENST00000532895 422 ntTSL 2 BASIC0.9□□□□□ -2.27
TRAV40A0A0B4J280 MIR3198-2-201ENST00000577868 80 ntBASIC0.9□□□□□ -2.27
TRAV40A0A0B4J280 AC136443.5-201ENST00000603741 370 ntBASIC0.9□□□□□ -2.27
TRAV40A0A0B4J280 AL080274.1-201ENST00000605565 220 ntBASIC0.9□□□□□ -2.27
TRAV40A0A0B4J280 AC006157.1-201ENST00000611750 366 ntBASIC0.9□□□□□ -2.27
TRAV40A0A0B4J280 SLC25A46-204ENST00000504098 2345 ntTSL 5 BASIC0.89□□□□□ -2.27
TRAV40A0A0B4J280 Y_RNA.122-201ENST00000363331 96 ntBASIC0.89□□□□□ -2.27
TRAV40A0A0B4J280 Y_RNA.138-201ENST00000363462 102 ntBASIC0.89□□□□□ -2.27
TRAV40A0A0B4J280 Y_RNA.197-201ENST00000364004 102 ntBASIC0.89□□□□□ -2.27
TRAV40A0A0B4J280 Y_RNA.216-201ENST00000364205 93 ntBASIC0.89□□□□□ -2.27
TRAV40A0A0B4J280 Y_RNA.252-201ENST00000364556 101 ntBASIC0.89□□□□□ -2.27
TRAV40A0A0B4J280 SNORD114-22-201ENST00000365423 72 ntBASIC0.89□□□□□ -2.27
TRAV40A0A0B4J280 RNA5SP259-201ENST00000365541 109 ntBASIC0.89□□□□□ -2.27
TRAV40A0A0B4J280 RNU6-1080P-201ENST00000383982 107 ntBASIC0.89□□□□□ -2.27
TRAV40A0A0B4J280 Y_RNA.508-201ENST00000384502 114 ntBASIC0.89□□□□□ -2.27
TRAV40A0A0B4J280 MIR515-2-201ENST00000384883 83 ntBASIC0.89□□□□□ -2.27
TRAV40A0A0B4J280 MIR515-1-201ENST00000384884 83 ntBASIC0.89□□□□□ -2.27
TRAV40A0A0B4J280 MIR628-201ENST00000385229 95 ntBASIC0.89□□□□□ -2.27
TRAV40A0A0B4J280 TRAJ41-201ENST00000390496 62 ntAPPRIS P1 BASIC0.89□□□□□ -2.27
TRAV40A0A0B4J280 SNORD78.2-201ENST00000391076 69 ntBASIC0.89□□□□□ -2.27
TRAV40A0A0B4J280 RNU1-78P-201ENST00000391248 165 ntBASIC0.89□□□□□ -2.27
TRAV40A0A0B4J280 MIR873-201ENST00000401120 77 ntBASIC0.89□□□□□ -2.27
TRAV40A0A0B4J280 MIR1285-1-201ENST00000408593 84 ntBASIC0.89□□□□□ -2.27
TRAV40A0A0B4J280 AL354751.2-201ENST00000415471 210 ntBASIC0.89□□□□□ -2.27
TRAV40A0A0B4J280 MTCO3P19-201ENST00000415864 321 ntBASIC0.89□□□□□ -2.27
TRAV40A0A0B4J280 AC078851.1-201ENST00000415918 298 ntTSL 3 BASIC0.89□□□□□ -2.27
TRAV40A0A0B4J280 AL591704.2-201ENST00000421658 181 ntBASIC0.89□□□□□ -2.27
TRAV40A0A0B4J280 AC099799.1-201ENST00000439809 192 ntBASIC0.89□□□□□ -2.27
TRAV40A0A0B4J280 Z98949.2-201ENST00000440996 144 ntBASIC0.89□□□□□ -2.27
TRAV40A0A0B4J280 DYNLT3P2-201ENST00000442517 295 ntBASIC0.89□□□□□ -2.27
TRAV40A0A0B4J280 PGBD4P5-201ENST00000445958 426 ntBASIC0.89□□□□□ -2.27
TRAV40A0A0B4J280 FCF1P4-201ENST00000448326 183 ntBASIC0.89□□□□□ -2.27
TRAV40A0A0B4J280 AC233266.1-201ENST00000454518 96 ntBASIC0.89□□□□□ -2.27
TRAV40A0A0B4J280 AC112492.4-201ENST00000456549 352 ntBASIC0.89□□□□□ -2.27
TRAV40A0A0B4J280 AC092991.1-201ENST00000477176 376 ntBASIC0.89□□□□□ -2.27
TRAV40A0A0B4J280 OR9P1P-201ENST00000496431 281 ntBASIC0.89□□□□□ -2.27
TRAV40A0A0B4J280 RNU6-436P-201ENST00000516171 114 ntBASIC0.89□□□□□ -2.27
TRAV40A0A0B4J280 RNU6-155P-201ENST00000516347 100 ntBASIC0.89□□□□□ -2.27
TRAV40A0A0B4J280 MIR2355-201ENST00000517199 87 ntBASIC0.89□□□□□ -2.27
TRAV40A0A0B4J280 CYCSP23-201ENST00000519781 313 ntBASIC0.89□□□□□ -2.27
TRAV40A0A0B4J280 AP001094.1-201ENST00000579805 193 ntBASIC0.89□□□□□ -2.27
TRAV40A0A0B4J280 MIR3145-201ENST00000580727 82 ntBASIC0.89□□□□□ -2.27
TRAV40A0A0B4J280 VN1R91P-201ENST00000594377 169 ntBASIC0.89□□□□□ -2.27
TRAV40A0A0B4J280 AC005176.2-201ENST00000596933 147 ntBASIC0.89□□□□□ -2.27
TRAV40A0A0B4J280 AC242852.1-201ENST00000612151 96 ntBASIC0.89□□□□□ -2.27
TRAV40A0A0B4J280 AC133104.2-201ENST00000615272 193 ntBASIC0.89□□□□□ -2.27
TRAV40A0A0B4J280 AC244015.1-201ENST00000622301 99 ntBASIC0.89□□□□□ -2.27
TRAV40A0A0B4J280 AC127459.3-201ENST00000624328 466 ntBASIC0.89□□□□□ -2.27
TRAV40A0A0B4J280 AL161722.3-201ENST00000605789 2983 ntBASIC0.89□□□□□ -2.27
TRAV40A0A0B4J280 CCDC68-202ENST00000432185 4014 ntAPPRIS P1 TSL 1 (best) BASIC0.89□□□□□ -2.27
TRAV40A0A0B4J280 PPP2R5A-205ENST00000537030 1719 ntTSL 2 BASIC0.89□□□□□ -2.27
TRAV40A0A0B4J280 Y_RNA.27-201ENST00000362540 103 ntBASIC0.88□□□□□ -2.27
TRAV40A0A0B4J280 RNU4-41P-201ENST00000364426 143 ntBASIC0.88□□□□□ -2.27
TRAV40A0A0B4J280 RNU6-450P-201ENST00000364654 107 ntBASIC0.88□□□□□ -2.27
TRAV40A0A0B4J280 Y_RNA.286-201ENST00000364813 102 ntBASIC0.88□□□□□ -2.27
TRAV40A0A0B4J280 SNORD42.2-201ENST00000365570 69 ntBASIC0.88□□□□□ -2.27
TRAV40A0A0B4J280 RNU6-937P-201ENST00000384325 106 ntBASIC0.88□□□□□ -2.27
Retrieved 100 of 98,524 protein–RNA pairs in 116.7 ms