Protein–RNA interactions for Protein: A0A0B4J248

TRAV1-1, T-cell receptor alpha variable 1-1 (Fragment), humanhuman

Predictions only

Length 108 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV1-1A0A0B4J248 AL358934.1-201ENST00000432346 324 ntBASIC-0.11□□□□□ -2.43
TRAV1-1A0A0B4J248 MTND1P26-201ENST00000440488 538 ntBASIC-0.11□□□□□ -2.43
TRAV1-1A0A0B4J248 LINC01487-202ENST00000490497 423 ntTSL 3 BASIC-0.11□□□□□ -2.43
TRAV1-1A0A0B4J248 Y_RNA.683-201ENST00000516508 93 ntBASIC-0.11□□□□□ -2.43
TRAV1-1A0A0B4J248 RNU6-107P-201ENST00000516643 102 ntBASIC-0.11□□□□□ -2.43
TRAV1-1A0A0B4J248 RNA5SP94-201ENST00000516917 108 ntBASIC-0.11□□□□□ -2.43
TRAV1-1A0A0B4J248 SCARNA16.5-201ENST00000517114 183 ntBASIC-0.11□□□□□ -2.43
TRAV1-1A0A0B4J248 AC112693.2-201ENST00000556538 232 ntBASIC-0.11□□□□□ -2.43
TRAV1-1A0A0B4J248 MIR4804-201ENST00000581683 73 ntBASIC-0.11□□□□□ -2.43
TRAV1-1A0A0B4J248 AC109347.2-201ENST00000610220 349 ntBASIC-0.11□□□□□ -2.43
TRAV1-1A0A0B4J248 AC090517.2-201ENST00000614966 680 ntBASIC-0.11□□□□□ -2.43
TRAV1-1A0A0B4J248 AC104260.1-201ENST00000616660 539 ntBASIC-0.11□□□□□ -2.43
TRAV1-1A0A0B4J248 U6.115-201ENST00000636045 103 ntBASIC-0.11□□□□□ -2.43
TRAV1-1A0A0B4J248 Y_RNA.30-201ENST00000362572 97 ntBASIC-0.12□□□□□ -2.43
TRAV1-1A0A0B4J248 RNU6-923P-201ENST00000364753 107 ntBASIC-0.12□□□□□ -2.43
TRAV1-1A0A0B4J248 RNY3P10-201ENST00000384764 102 ntBASIC-0.12□□□□□ -2.43
TRAV1-1A0A0B4J248 MT-TN-201ENST00000387400 73 ntBASIC-0.12□□□□□ -2.43
TRAV1-1A0A0B4J248 PDCL2P1-201ENST00000419302 352 ntBASIC-0.12□□□□□ -2.43
TRAV1-1A0A0B4J248 AC013401.1-202ENST00000422017 626 ntTSL 2 BASIC-0.12□□□□□ -2.43
TRAV1-1A0A0B4J248 LINC01707-201ENST00000425517 627 ntTSL 3 BASIC-0.12□□□□□ -2.43
TRAV1-1A0A0B4J248 MTCO2P19-201ENST00000427513 598 ntBASIC-0.12□□□□□ -2.43
TRAV1-1A0A0B4J248 AC073464.1-201ENST00000429823 534 ntBASIC-0.12□□□□□ -2.43
TRAV1-1A0A0B4J248 RNU7-56P-201ENST00000458744 62 ntBASIC-0.12□□□□□ -2.43
TRAV1-1A0A0B4J248 RNU7-125P-201ENST00000458760 62 ntBASIC-0.12□□□□□ -2.43
TRAV1-1A0A0B4J248 RNU7-187P-201ENST00000458985 68 ntBASIC-0.12□□□□□ -2.43
TRAV1-1A0A0B4J248 RNU6-1208P-201ENST00000459588 107 ntBASIC-0.12□□□□□ -2.43
TRAV1-1A0A0B4J248 AC108516.1-201ENST00000503666 257 ntTSL 2 BASIC-0.12□□□□□ -2.43
TRAV1-1A0A0B4J248 AC116353.2-201ENST00000505332 712 ntBASIC-0.12□□□□□ -2.43
TRAV1-1A0A0B4J248 LINC02061-201ENST00000514225 335 ntTSL 3 BASIC-0.12□□□□□ -2.43
TRAV1-1A0A0B4J248 RNU6-977P-201ENST00000516411 103 ntBASIC-0.12□□□□□ -2.43
TRAV1-1A0A0B4J248 RNU6-1332P-201ENST00000516666 104 ntBASIC-0.12□□□□□ -2.43
TRAV1-1A0A0B4J248 RNU4-77P-201ENST00000516692 156 ntBASIC-0.12□□□□□ -2.43
TRAV1-1A0A0B4J248 SCARNA1-201ENST00000517138 166 ntBASIC-0.12□□□□□ -2.43
TRAV1-1A0A0B4J248 AC134698.4-201ENST00000523451 826 ntBASIC-0.12□□□□□ -2.43
TRAV1-1A0A0B4J248 AC026371.1-201ENST00000551867 419 ntBASIC-0.12□□□□□ -2.43
TRAV1-1A0A0B4J248 NDUFAF4P1-201ENST00000559425 519 ntBASIC-0.12□□□□□ -2.43
TRAV1-1A0A0B4J248 AC009094.1-201ENST00000564443 426 ntBASIC-0.12□□□□□ -2.43
TRAV1-1A0A0B4J248 AC092378.2-202ENST00000569328 445 ntTSL 3 BASIC-0.12□□□□□ -2.43
TRAV1-1A0A0B4J248 MIR5696-201ENST00000578474 85 ntBASIC-0.12□□□□□ -2.43
TRAV1-1A0A0B4J248 MIR2909-201ENST00000617113 69 ntBASIC-0.12□□□□□ -2.43
TRAV1-1A0A0B4J248 SNORD45.3-201ENST00000363836 72 ntBASIC-0.13□□□□□ -2.43
TRAV1-1A0A0B4J248 Y_RNA.201-201ENST00000364052 96 ntBASIC-0.13□□□□□ -2.43
TRAV1-1A0A0B4J248 RNU6-396P-201ENST00000365369 105 ntBASIC-0.13□□□□□ -2.43
TRAV1-1A0A0B4J248 MIR522-201ENST00000385071 87 ntBASIC-0.13□□□□□ -2.43
TRAV1-1A0A0B4J248 RNU6ATAC11P-201ENST00000408541 125 ntBASIC-0.13□□□□□ -2.43
TRAV1-1A0A0B4J248 SNORD100-201ENST00000408573 76 ntBASIC-0.13□□□□□ -2.43
TRAV1-1A0A0B4J248 AL136320.1-201ENST00000417273 430 ntTSL 3 BASIC-0.13□□□□□ -2.43
TRAV1-1A0A0B4J248 AL353193.1-201ENST00000421444 268 ntBASIC-0.13□□□□□ -2.43
TRAV1-1A0A0B4J248 SEPT7P4-201ENST00000437076 306 ntBASIC-0.13□□□□□ -2.43
TRAV1-1A0A0B4J248 SUMO1P2-201ENST00000452524 304 ntBASIC-0.13□□□□□ -2.43
TRAV1-1A0A0B4J248 SNORA40.12-201ENST00000516329 111 ntBASIC-0.13□□□□□ -2.43
TRAV1-1A0A0B4J248 RNU6-759P-201ENST00000516740 103 ntBASIC-0.13□□□□□ -2.43
TRAV1-1A0A0B4J248 AC060788.1-201ENST00000521318 469 ntBASIC-0.13□□□□□ -2.43
TRAV1-1A0A0B4J248 MIR3915-201ENST00000578518 97 ntBASIC-0.13□□□□□ -2.43
TRAV1-1A0A0B4J248 hsa-mir-3130-1.1-201ENST00000579223 75 ntBASIC-0.13□□□□□ -2.43
TRAV1-1A0A0B4J248 AF246928.1-201ENST00000623768 87 ntBASIC-0.13□□□□□ -2.43
TRAV1-1A0A0B4J248 AC098679.4-201ENST00000624241 654 ntBASIC-0.13□□□□□ -2.43
TRAV1-1A0A0B4J248 RNU6-934P-201ENST00000365154 107 ntBASIC-0.14□□□□□ -2.43
TRAV1-1A0A0B4J248 RNU4-20P-201ENST00000365601 151 ntBASIC-0.14□□□□□ -2.43
TRAV1-1A0A0B4J248 SNORA8.2-201ENST00000384372 139 ntBASIC-0.14□□□□□ -2.43
TRAV1-1A0A0B4J248 RNU6-136P-201ENST00000384663 107 ntBASIC-0.14□□□□□ -2.43
TRAV1-1A0A0B4J248 SNORA75.6-201ENST00000391318 127 ntBASIC-0.14□□□□□ -2.43
TRAV1-1A0A0B4J248 AL354751.2-201ENST00000415471 210 ntBASIC-0.14□□□□□ -2.43
TRAV1-1A0A0B4J248 AL606489.2-201ENST00000433886 234 ntBASIC-0.14□□□□□ -2.43
TRAV1-1A0A0B4J248 RN7SKP287-201ENST00000516546 266 ntBASIC-0.14□□□□□ -2.43
TRAV1-1A0A0B4J248 SNORD45.4-201ENST00000516629 73 ntBASIC-0.14□□□□□ -2.43
TRAV1-1A0A0B4J248 MIR548AR-201ENST00000582191 57 ntBASIC-0.14□□□□□ -2.43
TRAV1-1A0A0B4J248 AC092807.2-201ENST00000609367 243 ntBASIC-0.14□□□□□ -2.43
TRAV1-1A0A0B4J248 NCBP1-205ENST00000629069 249 ntTSL 5 BASIC-0.14□□□□□ -2.43
TRAV1-1A0A0B4J248 Y_RNA.151-201ENST00000363566 112 ntBASIC-0.15□□□□□ -2.43
TRAV1-1A0A0B4J248 Y_RNA.361-201ENST00000365515 120 ntBASIC-0.15□□□□□ -2.43
TRAV1-1A0A0B4J248 RNU6-128P-201ENST00000383976 107 ntBASIC-0.15□□□□□ -2.43
TRAV1-1A0A0B4J248 SNORD28B-201ENST00000390993 75 ntBASIC-0.15□□□□□ -2.43
TRAV1-1A0A0B4J248 NCKAP5-IT1-201ENST00000416437 554 ntTSL 4 BASIC-0.15□□□□□ -2.43
TRAV1-1A0A0B4J248 KCNMA1-AS2-201ENST00000428936 427 ntTSL 3 BASIC-0.15□□□□□ -2.43
TRAV1-1A0A0B4J248 AC108488.2-201ENST00000438485 421 ntAPPRIS P1 TSL 3 BASIC-0.15□□□□□ -2.43
TRAV1-1A0A0B4J248 ZNF736P8Y-201ENST00000451913 669 ntBASIC-0.15□□□□□ -2.43
TRAV1-1A0A0B4J248 Y_RNA.681-201ENST00000516445 113 ntBASIC-0.15□□□□□ -2.43
TRAV1-1A0A0B4J248 RNU6-63P-201ENST00000516690 95 ntBASIC-0.15□□□□□ -2.43
TRAV1-1A0A0B4J248 AC113192.4-201ENST00000534666 547 ntTSL 4 BASIC-0.15□□□□□ -2.43
TRAV1-1A0A0B4J248 AC126177.2-201ENST00000552154 452 ntTSL 3 BASIC-0.15□□□□□ -2.43
TRAV1-1A0A0B4J248 MIR4771-2-201ENST00000577758 74 ntBASIC-0.15□□□□□ -2.43
TRAV1-1A0A0B4J248 MIR3678-201ENST00000578455 94 ntBASIC-0.15□□□□□ -2.43
TRAV1-1A0A0B4J248 MIR4771-1-201ENST00000582617 74 ntBASIC-0.15□□□□□ -2.43
TRAV1-1A0A0B4J248 POLR3GP2-201ENST00000588366 668 ntBASIC-0.15□□□□□ -2.43
TRAV1-1A0A0B4J248 AC020891.4-201ENST00000605745 93 ntBASIC-0.15□□□□□ -2.43
TRAV1-1A0A0B4J248 Y_RNA.185-201ENST00000363894 100 ntBASIC-0.16□□□□□ -2.44
TRAV1-1A0A0B4J248 Y_RNA.243-201ENST00000364481 109 ntBASIC-0.16□□□□□ -2.44
TRAV1-1A0A0B4J248 RNU4-66P-201ENST00000365199 138 ntBASIC-0.16□□□□□ -2.44
TRAV1-1A0A0B4J248 MIR570-201ENST00000384917 97 ntBASIC-0.16□□□□□ -2.44
TRAV1-1A0A0B4J248 PCNPP3-201ENST00000393579 471 ntBASIC-0.16□□□□□ -2.44
TRAV1-1A0A0B4J248 PCMTD1P1-201ENST00000455560 355 ntBASIC-0.16□□□□□ -2.44
TRAV1-1A0A0B4J248 RNU6-1114P-201ENST00000516022 107 ntBASIC-0.16□□□□□ -2.44
TRAV1-1A0A0B4J248 AC141557.1-201ENST00000540982 400 ntBASIC-0.16□□□□□ -2.44
TRAV1-1A0A0B4J248 MIR4676-201ENST00000583078 72 ntBASIC-0.16□□□□□ -2.44
TRAV1-1A0A0B4J248 AC008608.1-201ENST00000603910 127 ntBASIC-0.16□□□□□ -2.44
TRAV1-1A0A0B4J248 MIR6755-201ENST00000619993 66 ntBASIC-0.16□□□□□ -2.44
TRAV1-1A0A0B4J248 uc_338.16-201ENST00000621804 95 ntBASIC-0.16□□□□□ -2.44
TRAV1-1A0A0B4J248 VPS35-212ENST00000640313 141 ntTSL 5 BASIC-0.16□□□□□ -2.44
TRAV1-1A0A0B4J248 OMD-201ENST00000375550 2449 ntAPPRIS P1 TSL 1 (best) BASIC-0.16□□□□□ -2.44
Retrieved 100 of 98,524 protein–RNA pairs in 101.3 ms