Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 STAU2-207ENST00000519961 3928 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
VPS9D1Q9Y2B5 RNFT1-201ENST00000305783 2101 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
VPS9D1Q9Y2B5 SNORD115-34-201ENST00000362441 82 ntBASIC4□□□□□ -1.77
VPS9D1Q9Y2B5 SNORD115-12-201ENST00000362583 82 ntBASIC4□□□□□ -1.77
VPS9D1Q9Y2B5 SNORD115-29-201ENST00000362834 82 ntBASIC4□□□□□ -1.77
VPS9D1Q9Y2B5 SNORD115-9-201ENST00000362912 82 ntBASIC4□□□□□ -1.77
VPS9D1Q9Y2B5 SNORD115-21-201ENST00000362963 81 ntBASIC4□□□□□ -1.77
VPS9D1Q9Y2B5 SNORD115-14-201ENST00000363090 81 ntBASIC4□□□□□ -1.77
VPS9D1Q9Y2B5 SNORD115-41-201ENST00000363608 82 ntBASIC4□□□□□ -1.77
VPS9D1Q9Y2B5 SNORD115-11-201ENST00000363616 82 ntBASIC4□□□□□ -1.77
VPS9D1Q9Y2B5 SNORD115-5-201ENST00000363633 82 ntBASIC4□□□□□ -1.77
VPS9D1Q9Y2B5 SNORD115-39-201ENST00000363694 82 ntBASIC4□□□□□ -1.77
VPS9D1Q9Y2B5 SNORD115-4-201ENST00000363810 82 ntBASIC4□□□□□ -1.77
VPS9D1Q9Y2B5 SNORD115-6-201ENST00000363942 82 ntBASIC4□□□□□ -1.77
VPS9D1Q9Y2B5 SNORD115-42-201ENST00000364273 82 ntBASIC4□□□□□ -1.77
VPS9D1Q9Y2B5 SNORD115-15-201ENST00000364809 81 ntBASIC4□□□□□ -1.77
VPS9D1Q9Y2B5 SNORD115-26-201ENST00000365067 82 ntBASIC4□□□□□ -1.77
VPS9D1Q9Y2B5 SNORD115-10-201ENST00000365073 81 ntBASIC4□□□□□ -1.77
VPS9D1Q9Y2B5 SNORD115-43-201ENST00000365503 82 ntBASIC4□□□□□ -1.77
VPS9D1Q9Y2B5 SNORD115-36-201ENST00000365629 82 ntBASIC4□□□□□ -1.77
VPS9D1Q9Y2B5 U8.11-201ENST00000384699 133 ntBASIC4□□□□□ -1.77
VPS9D1Q9Y2B5 U8.18-201ENST00000459285 133 ntBASIC4□□□□□ -1.77
VPS9D1Q9Y2B5 RNU7-45P-201ENST00000459460 63 ntBASIC4□□□□□ -1.77
VPS9D1Q9Y2B5 AC090821.2-201ENST00000523552 176 ntBASIC4□□□□□ -1.77
VPS9D1Q9Y2B5 ADGRL2-207ENST00000370723 5254 ntTSL 5 BASIC4□□□□□ -1.77
VPS9D1Q9Y2B5 SLC30A6-204ENST00000406369 4589 ntTSL 1 (best) BASIC4□□□□□ -1.77
VPS9D1Q9Y2B5 LINC00648-202ENST00000555985 2885 ntTSL 2 BASIC4□□□□□ -1.77
VPS9D1Q9Y2B5 ADAMTS9-AS1-207ENST00000594810 3609 ntTSL 4 BASIC4□□□□□ -1.77
VPS9D1Q9Y2B5 CCSER1-201ENST00000432775 3927 ntTSL 1 (best) BASIC4□□□□□ -1.77
VPS9D1Q9Y2B5 KIAA1107-203ENST00000637221 4337 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
VPS9D1Q9Y2B5 NLGN1-201ENST00000361589 5092 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
VPS9D1Q9Y2B5 SNORA22.1-201ENST00000362701 134 ntBASIC3.99□□□□□ -1.77
VPS9D1Q9Y2B5 Y_RNA.57-201ENST00000362806 113 ntBASIC3.99□□□□□ -1.77
VPS9D1Q9Y2B5 TRAJ7-201ENST00000390530 59 ntAPPRIS P1 BASIC3.99□□□□□ -1.77
VPS9D1Q9Y2B5 SNORA40.18-201ENST00000391200 128 ntBASIC3.99□□□□□ -1.77
VPS9D1Q9Y2B5 IGKV2D-30-201ENST00000474213 395 ntAPPRIS P1 BASIC3.99□□□□□ -1.77
VPS9D1Q9Y2B5 MIR3160-1-201ENST00000577972 85 ntBASIC3.99□□□□□ -1.77
VPS9D1Q9Y2B5 STAU2-201ENST00000355780 4061 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
VPS9D1Q9Y2B5 XIRP2-204ENST00000409273 12269 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
VPS9D1Q9Y2B5 ZNF962P-201ENST00000443465 3140 ntBASIC3.99□□□□□ -1.77
VPS9D1Q9Y2B5 NR3C1-206ENST00000424646 4591 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
VPS9D1Q9Y2B5 RNU6-546P-201ENST00000383991 107 ntBASIC3.98□□□□□ -1.77
VPS9D1Q9Y2B5 Y_RNA.494-201ENST00000384432 111 ntBASIC3.98□□□□□ -1.77
VPS9D1Q9Y2B5 Y_RNA.567-201ENST00000384736 106 ntBASIC3.98□□□□□ -1.77
VPS9D1Q9Y2B5 RNU6-613P-201ENST00000410412 108 ntBASIC3.98□□□□□ -1.77
VPS9D1Q9Y2B5 RN7SKP177-201ENST00000410567 355 ntBASIC3.98□□□□□ -1.77
VPS9D1Q9Y2B5 PHBP14-201ENST00000512887 367 ntBASIC3.98□□□□□ -1.77
VPS9D1Q9Y2B5 RNU6-871P-201ENST00000516122 100 ntBASIC3.98□□□□□ -1.77
VPS9D1Q9Y2B5 MRPL49P2-201ENST00000521066 465 ntBASIC3.98□□□□□ -1.77
VPS9D1Q9Y2B5 CFAP44-202ENST00000393845 7069 ntAPPRIS ALT2 TSL 5 BASIC3.98□□□□□ -1.77
VPS9D1Q9Y2B5 SLITRK4-203ENST00000596188 8545 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
VPS9D1Q9Y2B5 USP9Y-201ENST00000338981 10036 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
VPS9D1Q9Y2B5 SUCNR1-201ENST00000362032 4181 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
VPS9D1Q9Y2B5 DOCK7-218ENST00000635123 6297 ntAPPRIS ALT2 TSL 5 BASIC3.97□□□□□ -1.77
VPS9D1Q9Y2B5 MBD5-212ENST00000627651 5610 ntTSL 5 BASIC3.97□□□□□ -1.77
VPS9D1Q9Y2B5 CNOT2-231ENST00000551483 4753 ntTSL 2 BASIC3.97□□□□□ -1.77
VPS9D1Q9Y2B5 SLC17A4-203ENST00000439485 3699 ntTSL 5 BASIC3.97□□□□□ -1.77
VPS9D1Q9Y2B5 MIR340-201ENST00000362125 95 ntBASIC3.97□□□□□ -1.77
VPS9D1Q9Y2B5 RNU6-478P-201ENST00000363904 110 ntBASIC3.97□□□□□ -1.77
VPS9D1Q9Y2B5 RNU6-987P-201ENST00000384759 104 ntBASIC3.97□□□□□ -1.77
VPS9D1Q9Y2B5 RNA5SP323-201ENST00000391094 133 ntBASIC3.97□□□□□ -1.77
VPS9D1Q9Y2B5 RPS26P8-201ENST00000393490 348 ntBASIC3.97□□□□□ -1.77
VPS9D1Q9Y2B5 PTMAP2-201ENST00000397627 327 ntBASIC3.97□□□□□ -1.77
VPS9D1Q9Y2B5 MIR1265-201ENST00000408444 86 ntBASIC3.97□□□□□ -1.77
VPS9D1Q9Y2B5 RPS29P28-201ENST00000446439 141 ntBASIC3.97□□□□□ -1.77
VPS9D1Q9Y2B5 RNU7-2P-201ENST00000516096 62 ntBASIC3.97□□□□□ -1.77
VPS9D1Q9Y2B5 RNU4ATAC6P-201ENST00000516592 126 ntBASIC3.97□□□□□ -1.77
VPS9D1Q9Y2B5 SNORA31.21-201ENST00000517180 77 ntBASIC3.97□□□□□ -1.77
VPS9D1Q9Y2B5 LINC02386-203ENST00000552182 501 ntTSL 3 BASIC3.97□□□□□ -1.77
VPS9D1Q9Y2B5 CYP19A1-220ENST00000613097 123 ntTSL 5 BASIC3.97□□□□□ -1.77
VPS9D1Q9Y2B5 MIR338-201ENST00000636369 67 ntBASIC3.97□□□□□ -1.77
VPS9D1Q9Y2B5 VGLL4-219ENST00000638314 93 ntTSL 5 BASIC3.97□□□□□ -1.77
VPS9D1Q9Y2B5 LGI1-210ENST00000629035 2251 ntTSL 5 BASIC3.97□□□□□ -1.77
VPS9D1Q9Y2B5 MMS22L-202ENST00000369251 3949 ntTSL 2 BASIC3.97□□□□□ -1.77
VPS9D1Q9Y2B5 ZNF616-201ENST00000330123 2563 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
VPS9D1Q9Y2B5 MCF2-203ENST00000370576 3688 ntAPPRIS P3 TSL 1 (best) BASIC3.97□□□□□ -1.77
VPS9D1Q9Y2B5 HEATR5B-201ENST00000233099 6905 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.77
VPS9D1Q9Y2B5 OTUD6B-AS1-201ENST00000522817 4275 ntTSL 2 BASIC3.96□□□□□ -1.77
VPS9D1Q9Y2B5 SKIL-202ENST00000413427 2702 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
VPS9D1Q9Y2B5 DMXL1-201ENST00000311085 11072 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
VPS9D1Q9Y2B5 SNORA32-201ENST00000384072 121 ntBASIC3.96□□□□□ -1.78
VPS9D1Q9Y2B5 AC083863.1-201ENST00000438811 231 ntBASIC3.96□□□□□ -1.78
VPS9D1Q9Y2B5 UBL5P3-201ENST00000475112 231 ntBASIC3.96□□□□□ -1.78
VPS9D1Q9Y2B5 AC114811.1-201ENST00000507207 168 ntBASIC3.96□□□□□ -1.78
VPS9D1Q9Y2B5 RNU6-1041P-201ENST00000516254 102 ntBASIC3.96□□□□□ -1.78
VPS9D1Q9Y2B5 AC034105.4-201ENST00000568304 277 ntBASIC3.96□□□□□ -1.78
VPS9D1Q9Y2B5 MIR6868-201ENST00000611215 58 ntBASIC3.96□□□□□ -1.78
VPS9D1Q9Y2B5 CTSLP2-204ENST00000629029 392 ntBASIC3.96□□□□□ -1.78
VPS9D1Q9Y2B5 CEP57L1-201ENST00000359793 2515 ntAPPRIS P3 TSL 1 (best) BASIC3.96□□□□□ -1.78
VPS9D1Q9Y2B5 FZD3-201ENST00000240093 13736 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
VPS9D1Q9Y2B5 IQCG-205ENST00000455191 1981 ntAPPRIS P1 TSL 2 BASIC3.96□□□□□ -1.78
VPS9D1Q9Y2B5 POLR2B-201ENST00000314595 3748 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
VPS9D1Q9Y2B5 PPIP5K2-217ENST00000627916 6010 ntAPPRIS ALT2 TSL 5 BASIC3.95□□□□□ -1.78
VPS9D1Q9Y2B5 SNORA8-201ENST00000384574 139 ntBASIC3.95□□□□□ -1.78
VPS9D1Q9Y2B5 AC091133.1-201ENST00000435491 483 ntTSL 3 BASIC3.95□□□□□ -1.78
VPS9D1Q9Y2B5 AC009969.1-201ENST00000438726 172 ntBASIC3.95□□□□□ -1.78
VPS9D1Q9Y2B5 RNU7-34P-201ENST00000459394 64 ntBASIC3.95□□□□□ -1.78
VPS9D1Q9Y2B5 RN7SL504P-201ENST00000494496 287 ntBASIC3.95□□□□□ -1.78
VPS9D1Q9Y2B5 LINC02064-201ENST00000506492 470 ntTSL 5 BASIC3.95□□□□□ -1.78
VPS9D1Q9Y2B5 SNORA31.9-201ENST00000516429 84 ntBASIC3.95□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 107 ms