Protein–RNA interactions for Protein: Q9UPQ0

LIMCH1, LIM and calponin homology domains-containing protein 1, humanhuman

Predictions only

Length 1,083 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1Q9UPQ0 RNU4-53P-201ENST00000410828 140 ntBASIC2.47□□□□□ -2.01
LIMCH1Q9UPQ0 RNA5SP270-201ENST00000411361 118 ntBASIC2.47□□□□□ -2.01
LIMCH1Q9UPQ0 RNU6-1278P-201ENST00000516130 107 ntBASIC2.47□□□□□ -2.01
LIMCH1Q9UPQ0 RNU1-40P-201ENST00000516816 164 ntBASIC2.47□□□□□ -2.01
LIMCH1Q9UPQ0 RNU1-97P-201ENST00000516872 164 ntBASIC2.47□□□□□ -2.01
LIMCH1Q9UPQ0 RNU6-111P-201ENST00000517179 105 ntBASIC2.47□□□□□ -2.01
LIMCH1Q9UPQ0 AC005786.1-201ENST00000588553 154 ntBASIC2.47□□□□□ -2.01
LIMCH1Q9UPQ0 AC135050.6-201ENST00000610813 528 ntTSL 3 BASIC2.47□□□□□ -2.01
LIMCH1Q9UPQ0 AL442067.1-201ENST00000613261 223 ntBASIC2.47□□□□□ -2.01
LIMCH1Q9UPQ0 MIR338-201ENST00000636369 67 ntBASIC2.47□□□□□ -2.01
LIMCH1Q9UPQ0 SLC25A46-204ENST00000504098 2345 ntTSL 5 BASIC2.47□□□□□ -2.01
LIMCH1Q9UPQ0 SERPINI2-207ENST00000476257 1837 ntAPPRIS P1 TSL 5 BASIC2.47□□□□□ -2.01
LIMCH1Q9UPQ0 PTPRQ-209ENST00000616559 8165 ntTSL 5 BASIC2.47□□□□□ -2.01
LIMCH1Q9UPQ0 KIF20B-202ENST00000371728 6419 ntAPPRIS ALT2 TSL 1 (best) BASIC2.46□□□□□ -2.02
LIMCH1Q9UPQ0 RNU4-82P-201ENST00000362443 140 ntBASIC2.46□□□□□ -2.02
LIMCH1Q9UPQ0 Y_RNA.287-201ENST00000364853 94 ntBASIC2.46□□□□□ -2.02
LIMCH1Q9UPQ0 Y_RNA.310-201ENST00000365063 113 ntBASIC2.46□□□□□ -2.02
LIMCH1Q9UPQ0 RNU6-1289P-201ENST00000384431 106 ntBASIC2.46□□□□□ -2.02
LIMCH1Q9UPQ0 Y_RNA.539-201ENST00000384635 107 ntBASIC2.46□□□□□ -2.02
LIMCH1Q9UPQ0 RNA5SP465-201ENST00000391195 109 ntBASIC2.46□□□□□ -2.02
LIMCH1Q9UPQ0 CST2P1-201ENST00000425770 87 ntBASIC2.46□□□□□ -2.02
LIMCH1Q9UPQ0 Z98949.2-201ENST00000440996 144 ntBASIC2.46□□□□□ -2.02
LIMCH1Q9UPQ0 AL139109.1-201ENST00000455491 297 ntBASIC2.46□□□□□ -2.02
LIMCH1Q9UPQ0 Y_RNA.679-201ENST00000516416 91 ntBASIC2.46□□□□□ -2.02
LIMCH1Q9UPQ0 RNU6-1337P-201ENST00000516525 95 ntBASIC2.46□□□□□ -2.02
LIMCH1Q9UPQ0 SNHG14-219ENST00000553134 470 ntTSL 2 BASIC2.46□□□□□ -2.02
LIMCH1Q9UPQ0 AC121758.2-201ENST00000553271 193 ntBASIC2.46□□□□□ -2.02
LIMCH1Q9UPQ0 MIR4282-201ENST00000583613 67 ntBASIC2.46□□□□□ -2.02
LIMCH1Q9UPQ0 AC007229.1-201ENST00000590455 412 ntBASIC2.46□□□□□ -2.02
LIMCH1Q9UPQ0 5S_rRNA.13-201ENST00000622298 123 ntBASIC2.46□□□□□ -2.02
LIMCH1Q9UPQ0 AC011604.2-202ENST00000540229 2451 ntAPPRIS P5 TSL 2 BASIC2.46□□□□□ -2.02
LIMCH1Q9UPQ0 MGAT4C-207ENST00000552808 1937 ntAPPRIS P1 TSL 2 BASIC2.45□□□□□ -2.02
LIMCH1Q9UPQ0 RNU6-1272P-201ENST00000362776 107 ntBASIC2.45□□□□□ -2.02
LIMCH1Q9UPQ0 Y_RNA.65-201ENST00000362846 100 ntBASIC2.45□□□□□ -2.02
LIMCH1Q9UPQ0 RNU1-22P-201ENST00000363334 158 ntBASIC2.45□□□□□ -2.02
LIMCH1Q9UPQ0 RNU1-96P-201ENST00000364163 162 ntBASIC2.45□□□□□ -2.02
LIMCH1Q9UPQ0 RNY1-201ENST00000364228 113 ntBASIC2.45□□□□□ -2.02
LIMCH1Q9UPQ0 RNU6-338P-201ENST00000383888 105 ntBASIC2.45□□□□□ -2.02
LIMCH1Q9UPQ0 RNU6-662P-201ENST00000384253 104 ntBASIC2.45□□□□□ -2.02
LIMCH1Q9UPQ0 RNU6-417P-201ENST00000384712 107 ntBASIC2.45□□□□□ -2.02
LIMCH1Q9UPQ0 HMGN2P39-201ENST00000398005 273 ntBASIC2.45□□□□□ -2.02
LIMCH1Q9UPQ0 SNORA11.4-201ENST00000408823 129 ntBASIC2.45□□□□□ -2.02
LIMCH1Q9UPQ0 RNA5SP338-201ENST00000410495 85 ntBASIC2.45□□□□□ -2.02
LIMCH1Q9UPQ0 AL592431.2-201ENST00000422198 171 ntTSL 3 BASIC2.45□□□□□ -2.02
LIMCH1Q9UPQ0 RPS29P21-201ENST00000496272 170 ntBASIC2.45□□□□□ -2.02
LIMCH1Q9UPQ0 AC097462.1-201ENST00000514125 324 ntBASIC2.45□□□□□ -2.02
LIMCH1Q9UPQ0 RNU7-172P-201ENST00000517125 64 ntBASIC2.45□□□□□ -2.02
LIMCH1Q9UPQ0 AC024995.1-201ENST00000523014 93 ntBASIC2.45□□□□□ -2.02
LIMCH1Q9UPQ0 AL359075.3-201ENST00000613288 217 ntBASIC2.45□□□□□ -2.02
LIMCH1Q9UPQ0 AL596028.1-201ENST00000326971 197 ntBASIC2.44□□□□□ -2.02
LIMCH1Q9UPQ0 Y_RNA.122-201ENST00000363331 96 ntBASIC2.44□□□□□ -2.02
LIMCH1Q9UPQ0 MIR518A2-201ENST00000384966 87 ntBASIC2.44□□□□□ -2.02
LIMCH1Q9UPQ0 AL136320.1-201ENST00000417273 430 ntTSL 3 BASIC2.44□□□□□ -2.02
LIMCH1Q9UPQ0 AC010409.1-201ENST00000487382 476 ntBASIC2.44□□□□□ -2.02
LIMCH1Q9UPQ0 AC004917.1-201ENST00000490856 575 ntTSL 4 BASIC2.44□□□□□ -2.02
LIMCH1Q9UPQ0 YWHAEP4-201ENST00000505390 198 ntBASIC2.44□□□□□ -2.02
LIMCH1Q9UPQ0 RNU7-99P-201ENST00000516271 62 ntBASIC2.44□□□□□ -2.02
LIMCH1Q9UPQ0 SNORD14A-201ENST00000606526 91 ntBASIC2.44□□□□□ -2.02
LIMCH1Q9UPQ0 CSNK1G3-202ENST00000360683 4047 ntAPPRIS ALT2 TSL 1 (best) BASIC2.43□□□□□ -2.02
LIMCH1Q9UPQ0 PRKD3-201ENST00000234179 5900 ntAPPRIS P1 TSL 1 (best) BASIC2.43□□□□□ -2.02
LIMCH1Q9UPQ0 RNU6-801P-201ENST00000364087 105 ntBASIC2.43□□□□□ -2.02
LIMCH1Q9UPQ0 AL117342.1-201ENST00000404861 406 ntBASIC2.43□□□□□ -2.02
LIMCH1Q9UPQ0 RPS20P10-201ENST00000451209 253 ntBASIC2.43□□□□□ -2.02
LIMCH1Q9UPQ0 LINC01766-201ENST00000453968 362 ntTSL 3 BASIC2.43□□□□□ -2.02
LIMCH1Q9UPQ0 SNORD2.1-201ENST00000458762 69 ntBASIC2.43□□□□□ -2.02
LIMCH1Q9UPQ0 COX6CP14-201ENST00000469580 174 ntBASIC2.43□□□□□ -2.02
LIMCH1Q9UPQ0 RNU1-142P-201ENST00000516682 145 ntBASIC2.43□□□□□ -2.02
LIMCH1Q9UPQ0 MIR4643-201ENST00000577473 78 ntBASIC2.43□□□□□ -2.02
LIMCH1Q9UPQ0 AC002984.1-201ENST00000591692 448 ntBASIC2.43□□□□□ -2.02
LIMCH1Q9UPQ0 MIR6715A-201ENST00000615929 79 ntBASIC2.43□□□□□ -2.02
LIMCH1Q9UPQ0 AC073349.3-201ENST00000617616 186 ntBASIC2.43□□□□□ -2.02
LIMCH1Q9UPQ0 snoU18.1-201ENST00000629629 71 ntBASIC2.43□□□□□ -2.02
LIMCH1Q9UPQ0 OGN-202ENST00000375561 2743 ntAPPRIS P1 TSL 1 (best) BASIC2.43□□□□□ -2.02
LIMCH1Q9UPQ0 SI-201ENST00000264382 6011 ntAPPRIS P1 TSL 1 (best) BASIC2.43□□□□□ -2.02
LIMCH1Q9UPQ0 AL356292.1-201ENST00000283110 373 ntBASIC2.42□□□□□ -2.02
LIMCH1Q9UPQ0 FABP12-201ENST00000360464 551 ntAPPRIS P1 TSL 1 (best) BASIC2.42□□□□□ -2.02
LIMCH1Q9UPQ0 RNU6-899P-201ENST00000363947 107 ntBASIC2.42□□□□□ -2.02
LIMCH1Q9UPQ0 RNA5SP138-201ENST00000365098 114 ntBASIC2.42□□□□□ -2.02
LIMCH1Q9UPQ0 RNU6-117P-201ENST00000365415 107 ntBASIC2.42□□□□□ -2.02
LIMCH1Q9UPQ0 SNORA72.4-201ENST00000384174 132 ntBASIC2.42□□□□□ -2.02
LIMCH1Q9UPQ0 MT-TR-201ENST00000387439 65 ntBASIC2.42□□□□□ -2.02
LIMCH1Q9UPQ0 RNU11-3P-201ENST00000391111 133 ntBASIC2.42□□□□□ -2.02
LIMCH1Q9UPQ0 RNA5SP508-201ENST00000411327 119 ntBASIC2.42□□□□□ -2.02
LIMCH1Q9UPQ0 AC009310.1-201ENST00000414414 451 ntBASIC2.42□□□□□ -2.02
LIMCH1Q9UPQ0 EBAG9P1-201ENST00000418955 543 ntBASIC2.42□□□□□ -2.02
LIMCH1Q9UPQ0 BX510359.4-201ENST00000423750 193 ntBASIC2.42□□□□□ -2.02
LIMCH1Q9UPQ0 AL121580.1-201ENST00000449941 219 ntTSL 3 BASIC2.42□□□□□ -2.02
LIMCH1Q9UPQ0 Y_RNA.638-201ENST00000459374 113 ntBASIC2.42□□□□□ -2.02
LIMCH1Q9UPQ0 AC008892.1-201ENST00000511861 384 ntTSL 3 BASIC2.42□□□□□ -2.02
LIMCH1Q9UPQ0 AC008413.1-201ENST00000511864 177 ntBASIC2.42□□□□□ -2.02
LIMCH1Q9UPQ0 RNU7-116P-201ENST00000516940 62 ntBASIC2.42□□□□□ -2.02
LIMCH1Q9UPQ0 IGKV3-31-201ENST00000523109 329 ntBASIC2.42□□□□□ -2.02
LIMCH1Q9UPQ0 MIR4435-1-201ENST00000582552 80 ntBASIC2.42□□□□□ -2.02
LIMCH1Q9UPQ0 AC005972.2-201ENST00000604690 348 ntBASIC2.42□□□□□ -2.02
LIMCH1Q9UPQ0 MIR203B-201ENST00000636080 86 ntBASIC2.42□□□□□ -2.02
LIMCH1Q9UPQ0 LRRIQ3-204ENST00000395089 2673 ntAPPRIS P2 TSL 5 BASIC2.41□□□□□ -2.02
LIMCH1Q9UPQ0 Y_RNA.117-201ENST00000363294 101 ntBASIC2.41□□□□□ -2.02
LIMCH1Q9UPQ0 Y_RNA.269-201ENST00000364685 89 ntBASIC2.41□□□□□ -2.02
LIMCH1Q9UPQ0 RNU6-1323P-201ENST00000384025 107 ntBASIC2.41□□□□□ -2.02
LIMCH1Q9UPQ0 RNU6-763P-201ENST00000390865 106 ntBASIC2.41□□□□□ -2.02
Retrieved 100 of 98,524 protein–RNA pairs in 140.6 ms