Protein–RNA interactions for Protein: Q9ULD4

BRPF3, Bromodomain and PHD finger-containing protein 3, humanhuman

Predictions only

Length 1,205 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRPF3Q9ULD4 SMARCAD1-201ENST00000354268 4912 ntAPPRIS P3 TSL 1 (best) BASIC3.42□□□□□ -1.86
BRPF3Q9ULD4 RNU1-138P-201ENST00000384093 164 ntBASIC3.41□□□□□ -1.86
BRPF3Q9ULD4 SNORA48.2-201ENST00000390926 124 ntBASIC3.41□□□□□ -1.86
BRPF3Q9ULD4 Y_RNA.622-201ENST00000411091 108 ntBASIC3.41□□□□□ -1.86
BRPF3Q9ULD4 RPS29P21-201ENST00000496272 170 ntBASIC3.41□□□□□ -1.86
BRPF3Q9ULD4 RNA5SP272-201ENST00000516095 111 ntBASIC3.41□□□□□ -1.86
BRPF3Q9ULD4 SNORA70.24-201ENST00000517233 118 ntBASIC3.41□□□□□ -1.86
BRPF3Q9ULD4 MIR4325-201ENST00000583049 90 ntBASIC3.41□□□□□ -1.86
BRPF3Q9ULD4 AL929325.1-201ENST00000603096 117 ntBASIC3.41□□□□□ -1.86
BRPF3Q9ULD4 CLLU1-201ENST00000378485 3897 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
BRPF3Q9ULD4 PIK3CA-201ENST00000263967 9093 ntAPPRIS P1 TSL 2 BASIC3.41□□□□□ -1.86
BRPF3Q9ULD4 PHTF2-201ENST00000248550 4778 ntTSL 1 (best) BASIC3.4□□□□□ -1.86
BRPF3Q9ULD4 RNU1-52P-201ENST00000384190 164 ntBASIC3.4□□□□□ -1.87
BRPF3Q9ULD4 Y_RNA.587-201ENST00000391210 103 ntBASIC3.4□□□□□ -1.87
BRPF3Q9ULD4 RNU4-43P-201ENST00000410628 137 ntBASIC3.4□□□□□ -1.87
BRPF3Q9ULD4 AC011406.1-201ENST00000512440 370 ntBASIC3.4□□□□□ -1.87
BRPF3Q9ULD4 RNU6-1146P-201ENST00000516282 102 ntBASIC3.4□□□□□ -1.87
BRPF3Q9ULD4 MIR548AI-201ENST00000579940 88 ntBASIC3.4□□□□□ -1.87
BRPF3Q9ULD4 AC010297.1-201ENST00000623948 149 ntBASIC3.4□□□□□ -1.87
BRPF3Q9ULD4 TBC1D31-214ENST00000522420 3167 ntTSL 1 (best) BASIC3.4□□□□□ -1.87
BRPF3Q9ULD4 PRKACB-207ENST00000394838 4294 ntTSL 5 BASIC3.39□□□□□ -1.87
BRPF3Q9ULD4 RNU6-199P-201ENST00000362954 107 ntBASIC3.39□□□□□ -1.87
BRPF3Q9ULD4 RNA5SP393-201ENST00000363423 117 ntBASIC3.39□□□□□ -1.87
BRPF3Q9ULD4 SNORD45.3-201ENST00000363836 72 ntBASIC3.39□□□□□ -1.87
BRPF3Q9ULD4 SNORA44-201ENST00000384584 132 ntBASIC3.39□□□□□ -1.87
BRPF3Q9ULD4 MIR491-201ENST00000384877 84 ntBASIC3.39□□□□□ -1.87
BRPF3Q9ULD4 MIR128-1-201ENST00000384921 82 ntBASIC3.39□□□□□ -1.87
BRPF3Q9ULD4 Y_RNA.586-201ENST00000391146 98 ntBASIC3.39□□□□□ -1.87
BRPF3Q9ULD4 MIR513C-201ENST00000401352 84 ntBASIC3.39□□□□□ -1.87
BRPF3Q9ULD4 SRIP3-201ENST00000413200 219 ntBASIC3.39□□□□□ -1.87
BRPF3Q9ULD4 AL139132.1-201ENST00000431587 344 ntBASIC3.39□□□□□ -1.87
BRPF3Q9ULD4 AC009238.1-201ENST00000442165 424 ntBASIC3.39□□□□□ -1.87
BRPF3Q9ULD4 AC009237.6-201ENST00000446969 424 ntBASIC3.39□□□□□ -1.87
BRPF3Q9ULD4 SNORA25.12-201ENST00000516202 82 ntBASIC3.39□□□□□ -1.87
BRPF3Q9ULD4 LARP7P3-201ENST00000579888 337 ntBASIC3.39□□□□□ -1.87
BRPF3Q9ULD4 AL021707.8-201ENST00000609428 183 ntBASIC3.39□□□□□ -1.87
BRPF3Q9ULD4 OSBPL1A-217ENST00000638614 84 ntTSL 5 BASIC3.39□□□□□ -1.87
BRPF3Q9ULD4 PCDH11Y-203ENST00000362095 4220 ntAPPRIS ALT2 TSL 1 (best) BASIC3.39□□□□□ -1.87
BRPF3Q9ULD4 snoU2-30.2-201ENST00000362805 70 ntBASIC3.38□□□□□ -1.87
BRPF3Q9ULD4 Y_RNA.203-201ENST00000364106 102 ntBASIC3.38□□□□□ -1.87
BRPF3Q9ULD4 RNU6-1117P-201ENST00000384525 104 ntBASIC3.38□□□□□ -1.87
BRPF3Q9ULD4 RNU6-417P-201ENST00000384712 107 ntBASIC3.38□□□□□ -1.87
BRPF3Q9ULD4 SNORD37.2-201ENST00000391075 66 ntBASIC3.38□□□□□ -1.87
BRPF3Q9ULD4 RPL30P13-201ENST00000418873 348 ntBASIC3.38□□□□□ -1.87
BRPF3Q9ULD4 AL358234.1-201ENST00000421132 273 ntTSL 5 BASIC3.38□□□□□ -1.87
BRPF3Q9ULD4 AC245102.2-201ENST00000448956 180 ntBASIC3.38□□□□□ -1.87
BRPF3Q9ULD4 SNRPGP8-201ENST00000454064 226 ntBASIC3.38□□□□□ -1.87
BRPF3Q9ULD4 AC074050.1-201ENST00000563247 211 ntBASIC3.38□□□□□ -1.87
BRPF3Q9ULD4 AL031274.2-201ENST00000599419 203 ntBASIC3.38□□□□□ -1.87
BRPF3Q9ULD4 HNRNPDLP4-201ENST00000605144 301 ntBASIC3.38□□□□□ -1.87
BRPF3Q9ULD4 COMMD6-213ENST00000626103 120 ntTSL 5 BASIC3.38□□□□□ -1.87
BRPF3Q9ULD4 RICTOR-202ENST00000357387 9543 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
BRPF3Q9ULD4 PRKACB-218ENST00000610703 4240 ntTSL 2 BASIC3.37□□□□□ -1.87
BRPF3Q9ULD4 DDX60L-207ENST00000505890 4568 ntTSL 2 BASIC3.37□□□□□ -1.87
BRPF3Q9ULD4 DEFA7P-201ENST00000382676 285 ntBASIC3.37□□□□□ -1.87
BRPF3Q9ULD4 Y_RNA.521-201ENST00000384560 114 ntBASIC3.37□□□□□ -1.87
BRPF3Q9ULD4 TRAV41-201ENST00000390468 336 ntAPPRIS P1 BASIC3.37□□□□□ -1.87
BRPF3Q9ULD4 RNU6-257P-201ENST00000410238 98 ntBASIC3.37□□□□□ -1.87
BRPF3Q9ULD4 RNU6-1186P-201ENST00000410429 97 ntBASIC3.37□□□□□ -1.87
BRPF3Q9ULD4 LINC00407-201ENST00000426509 295 ntTSL 5 BASIC3.37□□□□□ -1.87
BRPF3Q9ULD4 AC108067.1-201ENST00000514304 215 ntTSL 5 BASIC3.37□□□□□ -1.87
BRPF3Q9ULD4 AC011604.1-201ENST00000545978 196 ntBASIC3.37□□□□□ -1.87
BRPF3Q9ULD4 MIR5194-201ENST00000582634 120 ntBASIC3.37□□□□□ -1.87
BRPF3Q9ULD4 AL049861.1-201ENST00000603130 150 ntBASIC3.37□□□□□ -1.87
BRPF3Q9ULD4 AL137847.3-201ENST00000611521 109 ntBASIC3.37□□□□□ -1.87
BRPF3Q9ULD4 AC091953.5-201ENST00000622919 233 ntBASIC3.37□□□□□ -1.87
BRPF3Q9ULD4 ZNF702P-202ENST00000434269 1966 ntBASIC3.37□□□□□ -1.87
BRPF3Q9ULD4 AC010332.2-201ENST00000613083 1904 ntBASIC3.36□□□□□ -1.87
BRPF3Q9ULD4 ZNF271P-202ENST00000465539 1970 ntBASIC3.36□□□□□ -1.87
BRPF3Q9ULD4 RNF219-AS1-214ENST00000607862 6001 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
BRPF3Q9ULD4 ZNF280D-201ENST00000267807 4328 ntAPPRIS P3 TSL 1 (best) BASIC3.36□□□□□ -1.87
BRPF3Q9ULD4 RNU1-96P-201ENST00000364163 162 ntBASIC3.36□□□□□ -1.87
BRPF3Q9ULD4 RNU6-1081P-201ENST00000384537 107 ntBASIC3.36□□□□□ -1.87
BRPF3Q9ULD4 RNU6-959P-201ENST00000384671 107 ntBASIC3.36□□□□□ -1.87
BRPF3Q9ULD4 SNORA79-201ENST00000408376 140 ntBASIC3.36□□□□□ -1.87
BRPF3Q9ULD4 LINC01201-201ENST00000412420 294 ntTSL 3 BASIC3.36□□□□□ -1.87
BRPF3Q9ULD4 DIP2A-IT1-201ENST00000442434 428 ntTSL 2 BASIC3.36□□□□□ -1.87
BRPF3Q9ULD4 SCGB1D5P-201ENST00000515134 247 ntBASIC3.36□□□□□ -1.87
BRPF3Q9ULD4 RNU6-1041P-201ENST00000516254 102 ntBASIC3.36□□□□□ -1.87
BRPF3Q9ULD4 SNORA31.15-201ENST00000516771 132 ntBASIC3.36□□□□□ -1.87
BRPF3Q9ULD4 AC112693.2-201ENST00000556538 232 ntBASIC3.36□□□□□ -1.87
BRPF3Q9ULD4 MIR2681-201ENST00000581814 105 ntBASIC3.36□□□□□ -1.87
BRPF3Q9ULD4 AC073413.2-201ENST00000604332 360 ntBASIC3.36□□□□□ -1.87
BRPF3Q9ULD4 AL049779.4-201ENST00000604500 156 ntBASIC3.36□□□□□ -1.87
BRPF3Q9ULD4 SKIL-202ENST00000413427 2702 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
BRPF3Q9ULD4 MACC1-202ENST00000400331 9159 ntAPPRIS P1 TSL 2 BASIC3.36□□□□□ -1.87
BRPF3Q9ULD4 NEB-203ENST00000397345 26202 ntAPPRIS ALT2 TSL 5 BASIC3.35□□□□□ -1.87
BRPF3Q9ULD4 NEB-209ENST00000427231 26202 ntAPPRIS ALT2 TSL 5 BASIC3.35□□□□□ -1.87
BRPF3Q9ULD4 Y_RNA.99-201ENST00000363138 105 ntBASIC3.35□□□□□ -1.87
BRPF3Q9ULD4 SNORA9.2-201ENST00000365361 133 ntBASIC3.35□□□□□ -1.87
BRPF3Q9ULD4 RNU6-768P-201ENST00000384683 107 ntBASIC3.35□□□□□ -1.87
BRPF3Q9ULD4 EEF1A1P41-201ENST00000414667 207 ntBASIC3.35□□□□□ -1.87
BRPF3Q9ULD4 AC063976.3-201ENST00000426849 329 ntBASIC3.35□□□□□ -1.87
BRPF3Q9ULD4 AL353689.1-201ENST00000438895 199 ntBASIC3.35□□□□□ -1.87
BRPF3Q9ULD4 RPS27P1-201ENST00000450552 247 ntBASIC3.35□□□□□ -1.87
BRPF3Q9ULD4 NDUFA5P6-201ENST00000542110 379 ntBASIC3.35□□□□□ -1.87
BRPF3Q9ULD4 AC007598.1-202ENST00000561528 435 ntTSL 3 BASIC3.35□□□□□ -1.87
BRPF3Q9ULD4 RPL23AP91-201ENST00000569211 455 ntBASIC3.35□□□□□ -1.87
BRPF3Q9ULD4 AC007229.1-201ENST00000590455 412 ntBASIC3.35□□□□□ -1.87
BRPF3Q9ULD4 KTN1-203ENST00000395309 4021 ntAPPRIS ALT2 TSL 5 BASIC3.35□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 107.2 ms