Protein–RNA interactions for Protein: Q9P1Q0

VPS54, Vacuolar protein sorting-associated protein 54, humanhuman

Predictions only

Length 977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54Q9P1Q0 PSPC1-AS2-201ENST00000423023 376 ntTSL 3 BASIC1.23□□□□□ -2.21
VPS54Q9P1Q0 MRPS18CP6-201ENST00000423587 223 ntBASIC1.23□□□□□ -2.21
VPS54Q9P1Q0 NCOA7-AS1-201ENST00000429007 501 ntTSL 3 BASIC1.23□□□□□ -2.21
VPS54Q9P1Q0 Y_RNA.653-201ENST00000459091 95 ntBASIC1.23□□□□□ -2.21
VPS54Q9P1Q0 MIR2355-201ENST00000517199 87 ntBASIC1.23□□□□□ -2.21
VPS54Q9P1Q0 AC005730.3-201ENST00000583067 366 ntBASIC1.23□□□□□ -2.21
VPS54Q9P1Q0 SNORD114-21-201ENST00000606412 72 ntBASIC1.23□□□□□ -2.21
VPS54Q9P1Q0 LINC01359-207ENST00000634799 487 ntTSL 5 BASIC1.23□□□□□ -2.21
VPS54Q9P1Q0 ZNF518A-210ENST00000624776 7994 ntAPPRIS P1 TSL 1 (best) BASIC1.22□□□□□ -2.21
VPS54Q9P1Q0 RNA5SP327-201ENST00000362494 101 ntBASIC1.22□□□□□ -2.21
VPS54Q9P1Q0 Y_RNA.265-201ENST00000364677 108 ntBASIC1.22□□□□□ -2.21
VPS54Q9P1Q0 AL137792.2-201ENST00000443484 235 ntBASIC1.22□□□□□ -2.21
VPS54Q9P1Q0 AL353743.2-204ENST00000456242 419 ntTSL 3 BASIC1.22□□□□□ -2.21
VPS54Q9P1Q0 COX6CP14-201ENST00000469580 174 ntBASIC1.22□□□□□ -2.21
VPS54Q9P1Q0 RNU6-277P-201ENST00000516272 106 ntBASIC1.22□□□□□ -2.21
VPS54Q9P1Q0 RNU6-1291P-201ENST00000516591 104 ntBASIC1.22□□□□□ -2.21
VPS54Q9P1Q0 AC023442.1-201ENST00000531247 422 ntBASIC1.22□□□□□ -2.21
VPS54Q9P1Q0 RAB11AP2-201ENST00000545905 639 ntBASIC1.22□□□□□ -2.21
VPS54Q9P1Q0 MIR4778-201ENST00000577635 80 ntBASIC1.22□□□□□ -2.21
VPS54Q9P1Q0 MIR3664-201ENST00000579074 99 ntBASIC1.22□□□□□ -2.21
VPS54Q9P1Q0 MIR4295-201ENST00000585286 85 ntBASIC1.22□□□□□ -2.21
VPS54Q9P1Q0 AL162424.1-201ENST00000602325 221 ntBASIC1.22□□□□□ -2.21
VPS54Q9P1Q0 MIR8065-201ENST00000620577 100 ntBASIC1.22□□□□□ -2.21
VPS54Q9P1Q0 AC127459.3-201ENST00000624328 466 ntBASIC1.22□□□□□ -2.21
VPS54Q9P1Q0 C9orf84-201ENST00000318737 4661 ntAPPRIS P3 TSL 1 (best) BASIC1.21□□□□□ -2.22
VPS54Q9P1Q0 Y_RNA.243-201ENST00000364481 109 ntBASIC1.21□□□□□ -2.22
VPS54Q9P1Q0 RNU6-1310P-201ENST00000384153 107 ntBASIC1.21□□□□□ -2.22
VPS54Q9P1Q0 RNU6-1297P-201ENST00000384415 104 ntBASIC1.21□□□□□ -2.22
VPS54Q9P1Q0 TRAJ47-201ENST00000390490 57 ntAPPRIS P1 BASIC1.21□□□□□ -2.22
VPS54Q9P1Q0 MIR873-201ENST00000401120 77 ntBASIC1.21□□□□□ -2.22
VPS54Q9P1Q0 AC096644.2-201ENST00000429278 159 ntBASIC1.21□□□□□ -2.22
VPS54Q9P1Q0 CALM2P4-201ENST00000430810 426 ntBASIC1.21□□□□□ -2.22
VPS54Q9P1Q0 AC092991.1-201ENST00000477176 376 ntBASIC1.21□□□□□ -2.22
VPS54Q9P1Q0 RNA5SP168-201ENST00000516642 112 ntBASIC1.21□□□□□ -2.22
VPS54Q9P1Q0 RNU6-63P-201ENST00000516690 95 ntBASIC1.21□□□□□ -2.22
VPS54Q9P1Q0 RNU7-4P-201ENST00000516961 62 ntBASIC1.21□□□□□ -2.22
VPS54Q9P1Q0 AC144568.1-201ENST00000520139 137 ntBASIC1.21□□□□□ -2.22
VPS54Q9P1Q0 AC091178.2-201ENST00000584401 117 ntBASIC1.21□□□□□ -2.22
VPS54Q9P1Q0 AC032019.2-201ENST00000584916 403 ntTSL 5 BASIC1.21□□□□□ -2.22
VPS54Q9P1Q0 UBE2V2P2-201ENST00000587677 504 ntBASIC1.21□□□□□ -2.22
VPS54Q9P1Q0 AC005828.6-201ENST00000606610 232 ntBASIC1.21□□□□□ -2.22
VPS54Q9P1Q0 AL513423.1-201ENST00000621695 132 ntBASIC1.21□□□□□ -2.22
VPS54Q9P1Q0 AC005592.1-201ENST00000566527 1640 ntBASIC1.2□□□□□ -2.22
VPS54Q9P1Q0 SNORA1B-201ENST00000362535 133 ntBASIC1.2□□□□□ -2.22
VPS54Q9P1Q0 RNY1P10-201ENST00000363268 113 ntBASIC1.2□□□□□ -2.22
VPS54Q9P1Q0 SNORA72.1-201ENST00000363485 129 ntBASIC1.2□□□□□ -2.22
VPS54Q9P1Q0 Y_RNA.314-201ENST00000365114 102 ntBASIC1.2□□□□□ -2.22
VPS54Q9P1Q0 RNU6-117P-201ENST00000365415 107 ntBASIC1.2□□□□□ -2.22
VPS54Q9P1Q0 Y_RNA.387-201ENST00000383918 102 ntBASIC1.2□□□□□ -2.22
VPS54Q9P1Q0 MIR660-201ENST00000385235 97 ntBASIC1.2□□□□□ -2.22
VPS54Q9P1Q0 DYNLT3P2-201ENST00000442517 295 ntBASIC1.2□□□□□ -2.22
VPS54Q9P1Q0 AC012445.1-201ENST00000442831 607 ntTSL 3 BASIC1.2□□□□□ -2.22
VPS54Q9P1Q0 AC233266.1-201ENST00000454518 96 ntBASIC1.2□□□□□ -2.22
VPS54Q9P1Q0 AC087343.1-201ENST00000477341 475 ntBASIC1.2□□□□□ -2.22
VPS54Q9P1Q0 RNU2-56P-201ENST00000516826 190 ntBASIC1.2□□□□□ -2.22
VPS54Q9P1Q0 RN7SKP88-201ENST00000516847 250 ntBASIC1.2□□□□□ -2.22
VPS54Q9P1Q0 RNU6-341P-201ENST00000516973 96 ntBASIC1.2□□□□□ -2.22
VPS54Q9P1Q0 NKAIN2-205ENST00000546092 148 ntTSL 5 BASIC1.2□□□□□ -2.22
VPS54Q9P1Q0 SNORA28-201ENST00000606769 126 ntBASIC1.2□□□□□ -2.22
VPS54Q9P1Q0 7SK.8-201ENST00000612110 250 ntBASIC1.2□□□□□ -2.22
VPS54Q9P1Q0 AC242852.1-201ENST00000612151 96 ntBASIC1.2□□□□□ -2.22
VPS54Q9P1Q0 7SK.11-201ENST00000615477 250 ntBASIC1.2□□□□□ -2.22
VPS54Q9P1Q0 7SK.13-201ENST00000622040 250 ntBASIC1.2□□□□□ -2.22
VPS54Q9P1Q0 5S_rRNA.13-201ENST00000622298 123 ntBASIC1.2□□□□□ -2.22
VPS54Q9P1Q0 AC244015.1-201ENST00000622301 99 ntBASIC1.2□□□□□ -2.22
VPS54Q9P1Q0 PPP2R5A-205ENST00000537030 1719 ntTSL 2 BASIC1.2□□□□□ -2.22
VPS54Q9P1Q0 Y_RNA.259-201ENST00000364619 101 ntBASIC1.19□□□□□ -2.22
VPS54Q9P1Q0 Y_RNA.303-201ENST00000364998 94 ntBASIC1.19□□□□□ -2.22
VPS54Q9P1Q0 RNU6-708P-201ENST00000384217 107 ntBASIC1.19□□□□□ -2.22
VPS54Q9P1Q0 RNU6-505P-201ENST00000384427 107 ntBASIC1.19□□□□□ -2.22
VPS54Q9P1Q0 SNORD116-29-201ENST00000384516 83 ntBASIC1.19□□□□□ -2.22
VPS54Q9P1Q0 MIR559-201ENST00000385188 96 ntBASIC1.19□□□□□ -2.22
VPS54Q9P1Q0 MIR618-201ENST00000385287 98 ntBASIC1.19□□□□□ -2.22
VPS54Q9P1Q0 U8.16-201ENST00000391279 133 ntBASIC1.19□□□□□ -2.22
VPS54Q9P1Q0 AC093850.1-201ENST00000454121 251 ntBASIC1.19□□□□□ -2.22
VPS54Q9P1Q0 HMGN1P7-201ENST00000491722 313 ntBASIC1.19□□□□□ -2.22
VPS54Q9P1Q0 RNU6-1278P-201ENST00000516130 107 ntBASIC1.19□□□□□ -2.22
VPS54Q9P1Q0 RNU6-699P-201ENST00000517081 110 ntBASIC1.19□□□□□ -2.22
VPS54Q9P1Q0 AC084882.1-201ENST00000561254 555 ntTSL 4 BASIC1.19□□□□□ -2.22
VPS54Q9P1Q0 AC011476.5-201ENST00000615594 130 ntBASIC1.19□□□□□ -2.22
VPS54Q9P1Q0 AC068647.2-201ENST00000637380 353 ntBASIC1.19□□□□□ -2.22
VPS54Q9P1Q0 NPAT-201ENST00000278612 6117 ntAPPRIS P2 TSL 1 (best) BASIC1.18□□□□□ -2.22
VPS54Q9P1Q0 MIR337-201ENST00000362281 93 ntBASIC1.18□□□□□ -2.22
VPS54Q9P1Q0 Y_RNA.101-201ENST00000363154 102 ntBASIC1.18□□□□□ -2.22
VPS54Q9P1Q0 RNU4-76P-201ENST00000364509 141 ntBASIC1.18□□□□□ -2.22
VPS54Q9P1Q0 Y_RNA.384-201ENST00000383909 102 ntBASIC1.18□□□□□ -2.22
VPS54Q9P1Q0 AC006159.2-201ENST00000421965 692 ntTSL 2 BASIC1.18□□□□□ -2.22
VPS54Q9P1Q0 ELOCP24-201ENST00000456370 334 ntBASIC1.18□□□□□ -2.22
VPS54Q9P1Q0 RPL39P38-201ENST00000467018 153 ntBASIC1.18□□□□□ -2.22
VPS54Q9P1Q0 OR9P1P-201ENST00000496431 281 ntBASIC1.18□□□□□ -2.22
VPS54Q9P1Q0 AC091951.2-201ENST00000500762 203 ntBASIC1.18□□□□□ -2.22
VPS54Q9P1Q0 RNU6-922P-201ENST00000516753 99 ntBASIC1.18□□□□□ -2.22
VPS54Q9P1Q0 Y_RNA.718-201ENST00000517110 102 ntBASIC1.18□□□□□ -2.22
VPS54Q9P1Q0 AL132765.2-201ENST00000610812 351 ntBASIC1.18□□□□□ -2.22
VPS54Q9P1Q0 AC084781.2-201ENST00000615568 161 ntBASIC1.18□□□□□ -2.22
VPS54Q9P1Q0 AC138305.3-201ENST00000624988 240 ntBASIC1.18□□□□□ -2.22
VPS54Q9P1Q0 MIR1302-1-201ENST00000637932 143 ntBASIC1.18□□□□□ -2.22
VPS54Q9P1Q0 KLRA1P-203ENST00000535939 2353 ntTSL 1 (best) BASIC1.18□□□□□ -2.22
VPS54Q9P1Q0 RNU6-490P-201ENST00000362985 107 ntBASIC1.17□□□□□ -2.22
VPS54Q9P1Q0 RNU6-626P-201ENST00000363354 107 ntBASIC1.17□□□□□ -2.22
Retrieved 100 of 98,524 protein–RNA pairs in 114.6 ms