Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 SAMD9L-201ENST00000318238 7134 ntAPPRIS P1 TSL 1 (best) BASIC2.66□□□□□ -1.98
TRIM39Q9HCM9 SNORA72-201ENST00000384339 132 ntBASIC2.66□□□□□ -1.98
TRIM39Q9HCM9 Y_RNA.510-201ENST00000384511 114 ntBASIC2.66□□□□□ -1.98
TRIM39Q9HCM9 SNORA8-201ENST00000384574 139 ntBASIC2.66□□□□□ -1.98
TRIM39Q9HCM9 RNU6-136P-201ENST00000384663 107 ntBASIC2.66□□□□□ -1.98
TRIM39Q9HCM9 RNA5SP465-201ENST00000391195 109 ntBASIC2.66□□□□□ -1.98
TRIM39Q9HCM9 RNA5SP467-201ENST00000391274 118 ntBASIC2.66□□□□□ -1.98
TRIM39Q9HCM9 RNU6-493P-201ENST00000391321 108 ntBASIC2.66□□□□□ -1.98
TRIM39Q9HCM9 AC116666.1-201ENST00000453915 551 ntTSL 5 BASIC2.66□□□□□ -1.98
TRIM39Q9HCM9 RNU7-94P-201ENST00000459576 63 ntBASIC2.66□□□□□ -1.98
TRIM39Q9HCM9 HMGB3P3-201ENST00000510526 400 ntBASIC2.66□□□□□ -1.98
TRIM39Q9HCM9 AC009930.1-201ENST00000522330 191 ntTSL 5 BASIC2.66□□□□□ -1.98
TRIM39Q9HCM9 MIR4319-201ENST00000577285 85 ntBASIC2.66□□□□□ -1.98
TRIM39Q9HCM9 OSBPL1A-217ENST00000638614 84 ntTSL 5 BASIC2.66□□□□□ -1.98
TRIM39Q9HCM9 PLOD2-204ENST00000461497 3043 ntTSL 2 BASIC2.66□□□□□ -1.98
TRIM39Q9HCM9 AC131280.1-202ENST00000624067 4211 ntBASIC2.66□□□□□ -1.98
TRIM39Q9HCM9 MAPK10-266ENST00000641066 6555 ntBASIC2.65□□□□□ -1.98
TRIM39Q9HCM9 AC062016.1-201ENST00000355719 319 ntBASIC2.65□□□□□ -1.99
TRIM39Q9HCM9 RNU6-862P-201ENST00000362804 105 ntBASIC2.65□□□□□ -1.99
TRIM39Q9HCM9 RNU11-3P-201ENST00000391111 133 ntBASIC2.65□□□□□ -1.99
TRIM39Q9HCM9 RNU2-52P-201ENST00000410680 190 ntBASIC2.65□□□□□ -1.99
TRIM39Q9HCM9 HMGN2P35-201ENST00000412164 270 ntBASIC2.65□□□□□ -1.99
TRIM39Q9HCM9 AC096725.1-201ENST00000514266 313 ntBASIC2.65□□□□□ -1.99
TRIM39Q9HCM9 RNY3P16-201ENST00000516338 101 ntBASIC2.65□□□□□ -1.99
TRIM39Q9HCM9 CARD18-203ENST00000532895 422 ntTSL 2 BASIC2.65□□□□□ -1.99
TRIM39Q9HCM9 5S_rRNA.11-201ENST00000618635 84 ntBASIC2.65□□□□□ -1.99
TRIM39Q9HCM9 OR2J3-203ENST00000641960 3342 ntAPPRIS P1 BASIC2.65□□□□□ -1.99
TRIM39Q9HCM9 RNU6-859P-201ENST00000362728 107 ntBASIC2.64□□□□□ -1.99
TRIM39Q9HCM9 Y_RNA.435-201ENST00000384095 112 ntBASIC2.64□□□□□ -1.99
TRIM39Q9HCM9 Y_RNA.555-201ENST00000384673 110 ntBASIC2.64□□□□□ -1.99
TRIM39Q9HCM9 AL117342.1-201ENST00000404861 406 ntBASIC2.64□□□□□ -1.99
TRIM39Q9HCM9 COX6CP10-201ENST00000416832 224 ntBASIC2.64□□□□□ -1.99
TRIM39Q9HCM9 BX510359.4-201ENST00000423750 193 ntBASIC2.64□□□□□ -1.99
TRIM39Q9HCM9 RNU6-437P-201ENST00000459408 95 ntBASIC2.64□□□□□ -1.99
TRIM39Q9HCM9 RN7SKP164-201ENST00000516138 266 ntBASIC2.64□□□□□ -1.99
TRIM39Q9HCM9 DLEU2_6.1-201ENST00000610536 112 ntBASIC2.64□□□□□ -1.99
TRIM39Q9HCM9 FTX_2.1-201ENST00000618816 94 ntBASIC2.64□□□□□ -1.99
TRIM39Q9HCM9 ARHGAP28-204ENST00000419673 5492 ntAPPRIS P2 TSL 1 (best) BASIC2.64□□□□□ -1.99
TRIM39Q9HCM9 MYSM1-208ENST00000622766 6020 ntTSL 1 (best) BASIC2.63□□□□□ -1.99
TRIM39Q9HCM9 Y_RNA.7-201ENST00000362352 102 ntBASIC2.63□□□□□ -1.99
TRIM39Q9HCM9 RNU6-209P-201ENST00000384118 107 ntBASIC2.63□□□□□ -1.99
TRIM39Q9HCM9 RNU4-70P-201ENST00000384579 139 ntBASIC2.63□□□□□ -1.99
TRIM39Q9HCM9 MIR518A2-201ENST00000384966 87 ntBASIC2.63□□□□□ -1.99
TRIM39Q9HCM9 MIR626-201ENST00000385032 94 ntBASIC2.63□□□□□ -1.99
TRIM39Q9HCM9 AC108938.1-201ENST00000451204 136 ntBASIC2.63□□□□□ -1.99
TRIM39Q9HCM9 CPHL1P-203ENST00000471823 523 ntTSL 5 BASIC2.63□□□□□ -1.99
TRIM39Q9HCM9 AC020703.1-201ENST00000505051 521 ntTSL 3 BASIC2.63□□□□□ -1.99
TRIM39Q9HCM9 SNORA31.15-201ENST00000516771 132 ntBASIC2.63□□□□□ -1.99
TRIM39Q9HCM9 RNU6-1096P-201ENST00000517089 102 ntBASIC2.63□□□□□ -1.99
TRIM39Q9HCM9 AC021269.2-201ENST00000532318 330 ntBASIC2.63□□□□□ -1.99
TRIM39Q9HCM9 MIR2681-201ENST00000581814 105 ntBASIC2.63□□□□□ -1.99
TRIM39Q9HCM9 AC069114.2-201ENST00000604699 304 ntBASIC2.63□□□□□ -1.99
TRIM39Q9HCM9 AC011124.2-201ENST00000518739 3222 ntTSL 1 (best) BASIC2.63□□□□□ -1.99
TRIM39Q9HCM9 ZMYM1-203ENST00000373330 4203 ntAPPRIS P1 TSL 1 (best) BASIC2.63□□□□□ -1.99
TRIM39Q9HCM9 ANKRD18EP-201ENST00000405487 2632 ntBASIC2.62□□□□□ -1.99
TRIM39Q9HCM9 Y_RNA.121-201ENST00000363309 113 ntBASIC2.62□□□□□ -1.99
TRIM39Q9HCM9 RNU6-103P-201ENST00000363686 107 ntBASIC2.62□□□□□ -1.99
TRIM39Q9HCM9 Y_RNA.233-201ENST00000364407 101 ntBASIC2.62□□□□□ -1.99
TRIM39Q9HCM9 RNU6-47P-201ENST00000383866 107 ntBASIC2.62□□□□□ -1.99
TRIM39Q9HCM9 RNU1-52P-201ENST00000384190 164 ntBASIC2.62□□□□□ -1.99
TRIM39Q9HCM9 TRAV41-201ENST00000390468 336 ntAPPRIS P1 BASIC2.62□□□□□ -1.99
TRIM39Q9HCM9 RNU6-918P-201ENST00000391219 106 ntBASIC2.62□□□□□ -1.99
TRIM39Q9HCM9 AL512604.1-201ENST00000404812 257 ntBASIC2.62□□□□□ -1.99
TRIM39Q9HCM9 RPS4XP11-201ENST00000446897 772 ntBASIC2.62□□□□□ -1.99
TRIM39Q9HCM9 AC011604.1-201ENST00000545978 196 ntBASIC2.62□□□□□ -1.99
TRIM39Q9HCM9 AC018630.2-201ENST00000534866 2403 ntBASIC2.62□□□□□ -1.99
TRIM39Q9HCM9 KTN1-204ENST00000395311 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC2.62□□□□□ -1.99
TRIM39Q9HCM9 AC007336.1-201ENST00000576365 3828 ntBASIC2.62□□□□□ -1.99
TRIM39Q9HCM9 CEP57L1-201ENST00000359793 2515 ntAPPRIS P3 TSL 1 (best) BASIC2.62□□□□□ -1.99
TRIM39Q9HCM9 PRKACB-204ENST00000370685 4481 ntAPPRIS P4 TSL 1 (best) BASIC2.62□□□□□ -1.99
TRIM39Q9HCM9 MIR196B-201ENST00000384852 84 ntBASIC2.61□□□□□ -1.99
TRIM39Q9HCM9 HMGN2P39-201ENST00000398005 273 ntBASIC2.61□□□□□ -1.99
TRIM39Q9HCM9 RNU6ATAC15P-201ENST00000408279 121 ntBASIC2.61□□□□□ -1.99
TRIM39Q9HCM9 AC069257.2-201ENST00000441819 155 ntBASIC2.61□□□□□ -1.99
TRIM39Q9HCM9 CFLAR-AS1-202ENST00000474886 223 ntTSL 3 BASIC2.61□□□□□ -1.99
TRIM39Q9HCM9 AC107393.1-201ENST00000512403 346 ntBASIC2.61□□□□□ -1.99
TRIM39Q9HCM9 AC021491.3-201ENST00000513378 156 ntTSL 3 BASIC2.61□□□□□ -1.99
TRIM39Q9HCM9 RNU7-128P-201ENST00000517247 62 ntBASIC2.61□□□□□ -1.99
TRIM39Q9HCM9 MIR4308-201ENST00000580634 81 ntBASIC2.61□□□□□ -1.99
TRIM39Q9HCM9 MIR4635-201ENST00000583759 79 ntBASIC2.61□□□□□ -1.99
TRIM39Q9HCM9 SNORD14A-201ENST00000606526 91 ntBASIC2.61□□□□□ -1.99
TRIM39Q9HCM9 MIR6079-201ENST00000635807 62 ntBASIC2.61□□□□□ -1.99
TRIM39Q9HCM9 IDE-201ENST00000265986 5877 ntAPPRIS P1 TSL 1 (best) BASIC2.6□□□□□ -1.99
TRIM39Q9HCM9 ZNF271P-202ENST00000465539 1970 ntBASIC2.6□□□□□ -1.99
TRIM39Q9HCM9 AASDH-207ENST00000513376 3241 ntTSL 1 (best) BASIC2.6□□□□□ -1.99
TRIM39Q9HCM9 Y_RNA.24-201ENST00000362508 103 ntBASIC2.6□□□□□ -1.99
TRIM39Q9HCM9 RNU6-674P-201ENST00000363831 107 ntBASIC2.6□□□□□ -1.99
TRIM39Q9HCM9 Y_RNA.238-201ENST00000364441 102 ntBASIC2.6□□□□□ -1.99
TRIM39Q9HCM9 RNU6-969P-201ENST00000383900 105 ntBASIC2.6□□□□□ -1.99
TRIM39Q9HCM9 Y_RNA.571-201ENST00000384753 98 ntBASIC2.6□□□□□ -1.99
TRIM39Q9HCM9 Y_RNA.621-201ENST00000411065 96 ntBASIC2.6□□□□□ -1.99
TRIM39Q9HCM9 LINC00407-201ENST00000426509 295 ntTSL 5 BASIC2.6□□□□□ -1.99
TRIM39Q9HCM9 SNORA59A-201ENST00000459326 152 ntBASIC2.6□□□□□ -1.99
TRIM39Q9HCM9 RPS26P45-201ENST00000471748 340 ntBASIC2.6□□□□□ -1.99
TRIM39Q9HCM9 RN7SL297P-201ENST00000483161 293 ntBASIC2.6□□□□□ -1.99
TRIM39Q9HCM9 Y_RNA.662-201ENST00000516028 97 ntBASIC2.6□□□□□ -1.99
TRIM39Q9HCM9 RNA5SP282-201ENST00000516355 108 ntBASIC2.6□□□□□ -1.99
TRIM39Q9HCM9 MIR3162-201ENST00000581818 82 ntBASIC2.6□□□□□ -1.99
TRIM39Q9HCM9 LINC01900-203ENST00000585185 393 ntTSL 3 BASIC2.6□□□□□ -1.99
TRIM39Q9HCM9 AC006023.1-201ENST00000603944 259 ntBASIC2.6□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 105.7 ms