Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 AP003715.1-201ENST00000532109 435 ntTSL 3 BASIC0.38□□□□□ -2.35
USP42Q9H9J4 LINC02442-201ENST00000537732 343 ntTSL 3 BASIC0.38□□□□□ -2.35
USP42Q9H9J4 AC131055.1-201ENST00000584626 316 ntBASIC0.38□□□□□ -2.35
USP42Q9H9J4 AC242498.1-201ENST00000604134 111 ntBASIC0.38□□□□□ -2.35
USP42Q9H9J4 AC010999.1-201ENST00000611856 324 ntBASIC0.38□□□□□ -2.35
USP42Q9H9J4 AL138726.1-201ENST00000614873 333 ntBASIC0.38□□□□□ -2.35
USP42Q9H9J4 AC243994.1-201ENST00000618627 109 ntBASIC0.38□□□□□ -2.35
USP42Q9H9J4 DEUP1-202ENST00000525646 1920 ntTSL 1 (best) BASIC0.37□□□□□ -2.35
USP42Q9H9J4 RNA5SP264-201ENST00000363115 107 ntBASIC0.37□□□□□ -2.35
USP42Q9H9J4 RNA5SP482-201ENST00000391269 118 ntBASIC0.37□□□□□ -2.35
USP42Q9H9J4 MIR1185-1-201ENST00000408598 86 ntBASIC0.37□□□□□ -2.35
USP42Q9H9J4 RNU5A-5P-201ENST00000411054 116 ntBASIC0.37□□□□□ -2.35
USP42Q9H9J4 AC243428.1-201ENST00000421099 264 ntBASIC0.37□□□□□ -2.35
USP42Q9H9J4 AC018865.2-201ENST00000423631 129 ntBASIC0.37□□□□□ -2.35
USP42Q9H9J4 AL162725.1-201ENST00000435405 301 ntBASIC0.37□□□□□ -2.35
USP42Q9H9J4 U7.7-201ENST00000459276 60 ntBASIC0.37□□□□□ -2.35
USP42Q9H9J4 AC010424.1-201ENST00000506336 297 ntBASIC0.37□□□□□ -2.35
USP42Q9H9J4 RNU6-107P-201ENST00000516643 102 ntBASIC0.37□□□□□ -2.35
USP42Q9H9J4 AP002004.2-201ENST00000531656 154 ntBASIC0.37□□□□□ -2.35
USP42Q9H9J4 AP003086.2-201ENST00000534168 437 ntTSL 3 BASIC0.37□□□□□ -2.35
USP42Q9H9J4 AP003174.2-201ENST00000544663 294 ntTSL 3 BASIC0.37□□□□□ -2.35
USP42Q9H9J4 ZNF519P2-201ENST00000557032 169 ntBASIC0.37□□□□□ -2.35
USP42Q9H9J4 NDUFAF4P1-201ENST00000559425 519 ntBASIC0.37□□□□□ -2.35
USP42Q9H9J4 AC006362.1-201ENST00000567392 174 ntBASIC0.37□□□□□ -2.35
USP42Q9H9J4 AC011195.1-201ENST00000578177 177 ntBASIC0.37□□□□□ -2.35
USP42Q9H9J4 AC010525.2-201ENST00000590920 195 ntBASIC0.37□□□□□ -2.35
USP42Q9H9J4 AC010620.1-201ENST00000601088 1102 ntBASIC0.37□□□□□ -2.35
USP42Q9H9J4 7SK.7-201ENST00000603504 247 ntBASIC0.37□□□□□ -2.35
USP42Q9H9J4 MIR6863-201ENST00000636112 90 ntBASIC0.37□□□□□ -2.35
USP42Q9H9J4 hsa-mir-548d-1.1-201ENST00000636914 97 ntBASIC0.37□□□□□ -2.35
USP42Q9H9J4 AC068137.3-201ENST00000639191 341 ntBASIC0.37□□□□□ -2.35
USP42Q9H9J4 SNORA27.1-201ENST00000362604 124 ntBASIC0.36□□□□□ -2.35
USP42Q9H9J4 Y_RNA.135-201ENST00000363439 95 ntBASIC0.36□□□□□ -2.35
USP42Q9H9J4 Y_RNA.336-201ENST00000365307 109 ntBASIC0.36□□□□□ -2.35
USP42Q9H9J4 Y_RNA.373-201ENST00000365600 103 ntBASIC0.36□□□□□ -2.35
USP42Q9H9J4 RNU6-281P-201ENST00000384212 103 ntBASIC0.36□□□□□ -2.35
USP42Q9H9J4 RNU6-1237P-201ENST00000384777 107 ntBASIC0.36□□□□□ -2.35
USP42Q9H9J4 MIR562-201ENST00000384894 95 ntBASIC0.36□□□□□ -2.35
USP42Q9H9J4 RNU6-780P-201ENST00000391030 104 ntBASIC0.36□□□□□ -2.35
USP42Q9H9J4 ELOCP21-201ENST00000412558 336 ntBASIC0.36□□□□□ -2.35
USP42Q9H9J4 DAP3P1-201ENST00000441522 278 ntBASIC0.36□□□□□ -2.35
USP42Q9H9J4 RNA5SP20-201ENST00000515976 84 ntBASIC0.36□□□□□ -2.35
USP42Q9H9J4 RNU4-77P-201ENST00000516692 156 ntBASIC0.36□□□□□ -2.35
USP42Q9H9J4 AC109810.1-201ENST00000534066 224 ntBASIC0.36□□□□□ -2.35
USP42Q9H9J4 RPL21P9-201ENST00000556149 474 ntBASIC0.36□□□□□ -2.35
USP42Q9H9J4 AL158211.1-201ENST00000566763 763 ntBASIC0.36□□□□□ -2.35
USP42Q9H9J4 MIR3672-201ENST00000584290 82 ntBASIC0.36□□□□□ -2.35
USP42Q9H9J4 AC093913.1-201ENST00000614178 329 ntBASIC0.36□□□□□ -2.35
USP42Q9H9J4 AC068137.4-201ENST00000638485 296 ntBASIC0.36□□□□□ -2.35
USP42Q9H9J4 KLRA1P-203ENST00000535939 2353 ntTSL 1 (best) BASIC0.35□□□□□ -2.35
USP42Q9H9J4 RNU6-833P-201ENST00000363486 107 ntBASIC0.35□□□□□ -2.35
USP42Q9H9J4 RNU6-407P-201ENST00000365280 104 ntBASIC0.35□□□□□ -2.35
USP42Q9H9J4 RNU6-117P-201ENST00000365415 107 ntBASIC0.35□□□□□ -2.35
USP42Q9H9J4 Y_RNA.405-201ENST00000383979 100 ntBASIC0.35□□□□□ -2.35
USP42Q9H9J4 Y_RNA.451-201ENST00000384200 100 ntBASIC0.35□□□□□ -2.35
USP42Q9H9J4 Y_RNA.481-201ENST00000384373 102 ntBASIC0.35□□□□□ -2.35
USP42Q9H9J4 Y_RNA.524-201ENST00000384564 100 ntBASIC0.35□□□□□ -2.35
USP42Q9H9J4 Y_RNA.533-201ENST00000384596 114 ntBASIC0.35□□□□□ -2.35
USP42Q9H9J4 Y_RNA.561-201ENST00000384694 100 ntBASIC0.35□□□□□ -2.35
USP42Q9H9J4 AL500522.1-201ENST00000423667 318 ntTSL 3 BASIC0.35□□□□□ -2.35
USP42Q9H9J4 MTND3P23-201ENST00000431980 347 ntBASIC0.35□□□□□ -2.35
USP42Q9H9J4 AC108488.2-201ENST00000438485 421 ntAPPRIS P1 TSL 3 BASIC0.35□□□□□ -2.35
USP42Q9H9J4 MTND4LP26-201ENST00000518144 282 ntBASIC0.35□□□□□ -2.35
USP42Q9H9J4 AC134698.4-201ENST00000523451 826 ntBASIC0.35□□□□□ -2.35
USP42Q9H9J4 AL357075.2-201ENST00000614906 189 ntBASIC0.35□□□□□ -2.35
USP42Q9H9J4 MTND5P26-201ENST00000426018 1752 ntBASIC0.35□□□□□ -2.35
USP42Q9H9J4 SNORA25.3-201ENST00000363205 127 ntBASIC0.34□□□□□ -2.36
USP42Q9H9J4 RNU6-1085P-201ENST00000363576 107 ntBASIC0.34□□□□□ -2.36
USP42Q9H9J4 RNU6-306P-201ENST00000384617 107 ntBASIC0.34□□□□□ -2.36
USP42Q9H9J4 RNU6-376P-201ENST00000384731 106 ntBASIC0.34□□□□□ -2.36
USP42Q9H9J4 RNU1-119P-201ENST00000391122 165 ntBASIC0.34□□□□□ -2.36
USP42Q9H9J4 MTCO3P40-201ENST00000392516 676 ntBASIC0.34□□□□□ -2.36
USP42Q9H9J4 PIGPP3-201ENST00000425307 415 ntBASIC0.34□□□□□ -2.36
USP42Q9H9J4 MTCO2P12-201ENST00000427426 682 ntBASIC0.34□□□□□ -2.36
USP42Q9H9J4 RPL23AP50-201ENST00000434149 455 ntBASIC0.34□□□□□ -2.36
USP42Q9H9J4 MTATP6P13-201ENST00000438531 667 ntBASIC0.34□□□□□ -2.36
USP42Q9H9J4 AL137792.2-201ENST00000443484 235 ntBASIC0.34□□□□□ -2.36
USP42Q9H9J4 AL138921.2-201ENST00000443919 578 ntTSL 5 BASIC0.34□□□□□ -2.36
USP42Q9H9J4 AC067940.1-201ENST00000458411 300 ntBASIC0.34□□□□□ -2.36
USP42Q9H9J4 AC046134.1-201ENST00000514454 666 ntBASIC0.34□□□□□ -2.36
USP42Q9H9J4 RNU7-41P-201ENST00000515917 61 ntBASIC0.34□□□□□ -2.36
USP42Q9H9J4 ACA59.1-201ENST00000515966 143 ntBASIC0.34□□□□□ -2.36
USP42Q9H9J4 Y_RNA.683-201ENST00000516508 93 ntBASIC0.34□□□□□ -2.36
USP42Q9H9J4 Y_RNA.693-201ENST00000516641 110 ntBASIC0.34□□□□□ -2.36
USP42Q9H9J4 AC087260.1-201ENST00000546118 401 ntTSL 5 BASIC0.34□□□□□ -2.36
USP42Q9H9J4 AC138625.1-201ENST00000567556 483 ntTSL 3 BASIC0.34□□□□□ -2.36
USP42Q9H9J4 AC019193.3-201ENST00000609144 554 ntBASIC0.34□□□□□ -2.36
USP42Q9H9J4 SEPT14P17-201ENST00000617978 177 ntBASIC0.34□□□□□ -2.36
USP42Q9H9J4 MIR6516-201ENST00000630554 81 ntBASIC0.34□□□□□ -2.36
USP42Q9H9J4 AC090582.1-201ENST00000636321 199 ntBASIC0.34□□□□□ -2.36
USP42Q9H9J4 RNU6-1119P-201ENST00000384349 108 ntBASIC0.33□□□□□ -2.36
USP42Q9H9J4 SNORD116-8-201ENST00000384365 95 ntBASIC0.33□□□□□ -2.36
USP42Q9H9J4 RNU6-136P-201ENST00000384663 107 ntBASIC0.33□□□□□ -2.36
USP42Q9H9J4 MIR891A-201ENST00000401237 79 ntBASIC0.33□□□□□ -2.36
USP42Q9H9J4 RNU6-1001P-201ENST00000411265 100 ntBASIC0.33□□□□□ -2.36
USP42Q9H9J4 AC079467.1-201ENST00000508512 503 ntTSL 3 BASIC0.33□□□□□ -2.36
USP42Q9H9J4 RN7SKP164-201ENST00000516138 266 ntBASIC0.33□□□□□ -2.36
USP42Q9H9J4 RNU6-256P-201ENST00000516747 97 ntBASIC0.33□□□□□ -2.36
USP42Q9H9J4 AL356133.2-201ENST00000521572 371 ntTSL 3 BASIC0.33□□□□□ -2.36
USP42Q9H9J4 AC023442.1-201ENST00000531247 422 ntBASIC0.33□□□□□ -2.36
Retrieved 100 of 98,524 protein–RNA pairs in 114.4 ms