Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 Y_RNA.691-201ENST00000516611 103 ntBASIC1.57□□□□□ -2.16
CHMP4AQ9BY43 RNU6-922P-201ENST00000516753 99 ntBASIC1.57□□□□□ -2.16
CHMP4AQ9BY43 RNU6-264P-201ENST00000517134 104 ntBASIC1.57□□□□□ -2.16
CHMP4AQ9BY43 AC136932.1-201ENST00000574771 208 ntBASIC1.57□□□□□ -2.16
CHMP4AQ9BY43 MGAT4C-209ENST00000611864 25116 ntAPPRIS P1 TSL 5 BASIC1.57□□□□□ -2.16
CHMP4AQ9BY43 Y_RNA.166-201ENST00000363730 102 ntBASIC1.56□□□□□ -2.16
CHMP4AQ9BY43 AC018865.2-201ENST00000423631 129 ntBASIC1.56□□□□□ -2.16
CHMP4AQ9BY43 AC015922.2-201ENST00000435593 184 ntBASIC1.56□□□□□ -2.16
CHMP4AQ9BY43 AC022493.2-201ENST00000506122 481 ntBASIC1.56□□□□□ -2.16
CHMP4AQ9BY43 SNORA31.2-201ENST00000516019 134 ntBASIC1.56□□□□□ -2.16
CHMP4AQ9BY43 AP000755.2-201ENST00000526777 571 ntTSL 5 BASIC1.56□□□□□ -2.16
CHMP4AQ9BY43 AC106754.2-201ENST00000623006 233 ntBASIC1.56□□□□□ -2.16
CHMP4AQ9BY43 MIR3674-201ENST00000636576 68 ntBASIC1.56□□□□□ -2.16
CHMP4AQ9BY43 ABCA5-201ENST00000392676 8220 ntAPPRIS P1 TSL 1 (best) BASIC1.56□□□□□ -2.16
CHMP4AQ9BY43 Y_RNA.267-201ENST00000364679 109 ntBASIC1.55□□□□□ -2.16
CHMP4AQ9BY43 MIR200A-201ENST00000384875 90 ntBASIC1.55□□□□□ -2.16
CHMP4AQ9BY43 MIR873-201ENST00000401120 77 ntBASIC1.55□□□□□ -2.16
CHMP4AQ9BY43 SNORD12B-201ENST00000410433 91 ntBASIC1.55□□□□□ -2.16
CHMP4AQ9BY43 Y_RNA.646-201ENST00000410980 101 ntBASIC1.55□□□□□ -2.16
CHMP4AQ9BY43 POLR2J4-204ENST00000418424 324 ntBASIC1.55□□□□□ -2.16
CHMP4AQ9BY43 AC108488.2-201ENST00000438485 421 ntAPPRIS P1 TSL 3 BASIC1.55□□□□□ -2.16
CHMP4AQ9BY43 AC245047.7-201ENST00000440265 293 ntBASIC1.55□□□□□ -2.16
CHMP4AQ9BY43 OR2A41P-201ENST00000473586 105 ntBASIC1.55□□□□□ -2.16
CHMP4AQ9BY43 RNA5SP168-201ENST00000516642 112 ntBASIC1.55□□□□□ -2.16
CHMP4AQ9BY43 AC068338.1-201ENST00000565567 176 ntBASIC1.55□□□□□ -2.16
CHMP4AQ9BY43 SNORA12.1-201ENST00000390873 148 ntBASIC1.54□□□□□ -2.16
CHMP4AQ9BY43 AC082651.2-201ENST00000496833 166 ntBASIC1.54□□□□□ -2.16
CHMP4AQ9BY43 MIR5690-201ENST00000583739 73 ntBASIC1.54□□□□□ -2.16
CHMP4AQ9BY43 LUZP6-201ENST00000589735 177 ntAPPRIS P1 BASIC1.54□□□□□ -2.16
CHMP4AQ9BY43 U6.115-201ENST00000636045 103 ntBASIC1.54□□□□□ -2.16
CHMP4AQ9BY43 RNU6-1301P-201ENST00000362724 104 ntBASIC1.53□□□□□ -2.16
CHMP4AQ9BY43 RNU6-310P-201ENST00000384655 107 ntBASIC1.53□□□□□ -2.16
CHMP4AQ9BY43 MIR625-201ENST00000385047 85 ntBASIC1.53□□□□□ -2.16
CHMP4AQ9BY43 SNORA69.1-201ENST00000390904 137 ntBASIC1.53□□□□□ -2.16
CHMP4AQ9BY43 AC063976.4-201ENST00000421971 163 ntBASIC1.53□□□□□ -2.16
CHMP4AQ9BY43 AC091021.1-201ENST00000468051 388 ntBASIC1.53□□□□□ -2.16
CHMP4AQ9BY43 OR9P1P-201ENST00000496431 281 ntBASIC1.53□□□□□ -2.16
CHMP4AQ9BY43 AP002001.1-203ENST00000534002 267 ntBASIC1.53□□□□□ -2.16
CHMP4AQ9BY43 MIR4778-201ENST00000577635 80 ntBASIC1.53□□□□□ -2.16
CHMP4AQ9BY43 AC091178.2-201ENST00000584401 117 ntBASIC1.53□□□□□ -2.16
CHMP4AQ9BY43 AL050343.2-201ENST00000607338 280 ntBASIC1.53□□□□□ -2.16
CHMP4AQ9BY43 TRAJ36-201ENST00000614481 58 ntAPPRIS P1 BASIC1.53□□□□□ -2.16
CHMP4AQ9BY43 AC022306.2-201ENST00000617563 647 ntBASIC1.53□□□□□ -2.16
CHMP4AQ9BY43 PPP2R5A-205ENST00000537030 1719 ntTSL 2 BASIC1.52□□□□□ -2.17
CHMP4AQ9BY43 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC1.52□□□□□ -2.17
CHMP4AQ9BY43 RNU6-1188P-201ENST00000363795 107 ntBASIC1.52□□□□□ -2.17
CHMP4AQ9BY43 RNU6-926P-201ENST00000384075 107 ntBASIC1.52□□□□□ -2.17
CHMP4AQ9BY43 SNORA80D-201ENST00000384488 135 ntBASIC1.52□□□□□ -2.17
CHMP4AQ9BY43 RNU6-1156P-201ENST00000410365 100 ntBASIC1.52□□□□□ -2.17
CHMP4AQ9BY43 LINC02491-201ENST00000504710 403 ntTSL 2 BASIC1.52□□□□□ -2.17
CHMP4AQ9BY43 hsa-mir-3119-1.1-201ENST00000577602 85 ntBASIC1.52□□□□□ -2.17
CHMP4AQ9BY43 RNU6-454P-201ENST00000364292 107 ntBASIC1.51□□□□□ -2.17
CHMP4AQ9BY43 SNORD114-24-201ENST00000365029 72 ntBASIC1.51□□□□□ -2.17
CHMP4AQ9BY43 LINC00583-201ENST00000381010 387 ntTSL 2 BASIC1.51□□□□□ -2.17
CHMP4AQ9BY43 Y_RNA.577-201ENST00000384794 101 ntBASIC1.51□□□□□ -2.17
CHMP4AQ9BY43 AC006159.2-201ENST00000421965 692 ntTSL 2 BASIC1.51□□□□□ -2.17
CHMP4AQ9BY43 AL589935.1-209ENST00000432050 418 ntTSL 5 BASIC1.51□□□□□ -2.17
CHMP4AQ9BY43 AL137792.2-201ENST00000443484 235 ntBASIC1.51□□□□□ -2.17
CHMP4AQ9BY43 RPL30P15-201ENST00000457129 321 ntBASIC1.51□□□□□ -2.17
CHMP4AQ9BY43 RNU6-408P-201ENST00000515910 100 ntBASIC1.51□□□□□ -2.17
CHMP4AQ9BY43 RNU6-1291P-201ENST00000516591 104 ntBASIC1.51□□□□□ -2.17
CHMP4AQ9BY43 AC005828.6-201ENST00000606610 232 ntBASIC1.51□□□□□ -2.17
CHMP4AQ9BY43 IL6ST-203ENST00000381287 8667 ntTSL 5 BASIC1.51□□□□□ -2.17
CHMP4AQ9BY43 RNU6-890P-201ENST00000384121 107 ntBASIC1.5□□□□□ -2.17
CHMP4AQ9BY43 RNU6-136P-201ENST00000384663 107 ntBASIC1.5□□□□□ -2.17
CHMP4AQ9BY43 RNU6-910P-201ENST00000390844 107 ntBASIC1.5□□□□□ -2.17
CHMP4AQ9BY43 SNORA75.6-201ENST00000391318 127 ntBASIC1.5□□□□□ -2.17
CHMP4AQ9BY43 MTND4P28-201ENST00000426217 387 ntBASIC1.5□□□□□ -2.17
CHMP4AQ9BY43 LINC01870-201ENST00000427042 390 ntTSL 3 BASIC1.5□□□□□ -2.17
CHMP4AQ9BY43 AC098614.3-201ENST00000438957 440 ntBASIC1.5□□□□□ -2.17
CHMP4AQ9BY43 RNU7-169P-201ENST00000459456 61 ntBASIC1.5□□□□□ -2.17
CHMP4AQ9BY43 SNORA70.12-201ENST00000516084 153 ntBASIC1.5□□□□□ -2.17
CHMP4AQ9BY43 RN7SKP179-201ENST00000516126 217 ntBASIC1.5□□□□□ -2.17
CHMP4AQ9BY43 RNU6-559P-201ENST00000516151 98 ntBASIC1.5□□□□□ -2.17
CHMP4AQ9BY43 AC100807.1-201ENST00000517640 552 ntTSL 5 BASIC1.5□□□□□ -2.17
CHMP4AQ9BY43 MIR4781-201ENST00000585250 76 ntBASIC1.5□□□□□ -2.17
CHMP4AQ9BY43 AC080078.3-201ENST00000605407 463 ntBASIC1.5□□□□□ -2.17
CHMP4AQ9BY43 AC091812.1-201ENST00000432235 1948 ntBASIC1.49□□□□□ -2.17
CHMP4AQ9BY43 Y_RNA.124-201ENST00000363339 93 ntBASIC1.49□□□□□ -2.17
CHMP4AQ9BY43 AC233266.1-201ENST00000454518 96 ntBASIC1.49□□□□□ -2.17
CHMP4AQ9BY43 LINC01399-202ENST00000458450 244 ntBASIC1.49□□□□□ -2.17
CHMP4AQ9BY43 RNU7-12P-201ENST00000516030 62 ntBASIC1.49□□□□□ -2.17
CHMP4AQ9BY43 AC023442.1-201ENST00000531247 422 ntBASIC1.49□□□□□ -2.17
CHMP4AQ9BY43 CR383656.11-201ENST00000552261 498 ntTSL 3 BASIC1.49□□□□□ -2.17
CHMP4AQ9BY43 AC242852.1-201ENST00000612151 96 ntBASIC1.49□□□□□ -2.17
CHMP4AQ9BY43 AC087588.2-201ENST00000617667 426 ntBASIC1.49□□□□□ -2.17
CHMP4AQ9BY43 CDKN3-212ENST00000620759 196 ntTSL 5 BASIC1.49□□□□□ -2.17
CHMP4AQ9BY43 AC244015.1-201ENST00000622301 99 ntBASIC1.49□□□□□ -2.17
CHMP4AQ9BY43 AC127459.3-201ENST00000624328 466 ntBASIC1.49□□□□□ -2.17
CHMP4AQ9BY43 SNORD41-201ENST00000386967 70 ntBASIC1.48□□□□□ -2.17
CHMP4AQ9BY43 Y_RNA.592-201ENST00000410274 109 ntBASIC1.48□□□□□ -2.17
CHMP4AQ9BY43 Y_RNA.605-201ENST00000410577 105 ntBASIC1.48□□□□□ -2.17
CHMP4AQ9BY43 AL591704.2-201ENST00000421658 181 ntBASIC1.48□□□□□ -2.17
CHMP4AQ9BY43 CALM2P4-201ENST00000430810 426 ntBASIC1.48□□□□□ -2.17
CHMP4AQ9BY43 AL121580.1-201ENST00000449941 219 ntTSL 3 BASIC1.48□□□□□ -2.17
CHMP4AQ9BY43 Y_RNA.676-201ENST00000516393 96 ntBASIC1.48□□□□□ -2.17
CHMP4AQ9BY43 PNRC2-204ENST00000579103 171 ntTSL 2 BASIC1.48□□□□□ -2.17
CHMP4AQ9BY43 MIR4295-201ENST00000585286 85 ntBASIC1.48□□□□□ -2.17
CHMP4AQ9BY43 AC027279.3-201ENST00000625055 122 ntBASIC1.48□□□□□ -2.17
CHMP4AQ9BY43 Y_RNA.4-201ENST00000362333 112 ntBASIC1.47□□□□□ -2.17
Retrieved 100 of 98,524 protein–RNA pairs in 104.5 ms