Protein–RNA interactions for Protein: Q9BT76

UPK3B, Uroplakin-3b, humanhuman

Predictions only

Length 320 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPK3BQ9BT76 RNU6-1096P-201ENST00000517089 102 ntBASIC0.28□□□□□ -2.36
UPK3BQ9BT76 MTND4LP26-201ENST00000518144 282 ntBASIC0.28□□□□□ -2.36
UPK3BQ9BT76 AC100801.1-202ENST00000518266 371 ntTSL 3 BASIC0.28□□□□□ -2.36
UPK3BQ9BT76 AP003174.2-201ENST00000544663 294 ntTSL 3 BASIC0.28□□□□□ -2.36
UPK3BQ9BT76 AL138726.1-201ENST00000614873 333 ntBASIC0.28□□□□□ -2.36
UPK3BQ9BT76 MIR6863-201ENST00000636112 90 ntBASIC0.28□□□□□ -2.36
UPK3BQ9BT76 AC010487.4-201ENST00000637027 61 ntBASIC0.28□□□□□ -2.36
UPK3BQ9BT76 SNORD68-201ENST00000363214 84 ntBASIC0.27□□□□□ -2.37
UPK3BQ9BT76 SNORD114-26-201ENST00000363543 72 ntBASIC0.27□□□□□ -2.37
UPK3BQ9BT76 Y_RNA.372-201ENST00000365599 102 ntBASIC0.27□□□□□ -2.37
UPK3BQ9BT76 SNORA36.2-201ENST00000384004 127 ntBASIC0.27□□□□□ -2.37
UPK3BQ9BT76 MIR1185-1-201ENST00000408598 86 ntBASIC0.27□□□□□ -2.37
UPK3BQ9BT76 MIR1298-201ENST00000408783 112 ntBASIC0.27□□□□□ -2.37
UPK3BQ9BT76 RNU6-1068P-201ENST00000410958 103 ntBASIC0.27□□□□□ -2.37
UPK3BQ9BT76 AC243428.1-201ENST00000421099 264 ntBASIC0.27□□□□□ -2.37
UPK3BQ9BT76 LINC01707-201ENST00000425517 627 ntTSL 3 BASIC0.27□□□□□ -2.37
UPK3BQ9BT76 AL353747.2-201ENST00000439207 205 ntTSL 3 BASIC0.27□□□□□ -2.37
UPK3BQ9BT76 AC114811.1-201ENST00000507207 168 ntBASIC0.27□□□□□ -2.37
UPK3BQ9BT76 RNU6-1114P-201ENST00000516022 107 ntBASIC0.27□□□□□ -2.37
UPK3BQ9BT76 RNA5SP480-201ENST00000516840 109 ntBASIC0.27□□□□□ -2.37
UPK3BQ9BT76 SNORA74.3-201ENST00000517108 154 ntBASIC0.27□□□□□ -2.37
UPK3BQ9BT76 AC093023.1-201ENST00000547375 507 ntBASIC0.27□□□□□ -2.37
UPK3BQ9BT76 MIR4760-201ENST00000585040 80 ntBASIC0.27□□□□□ -2.37
UPK3BQ9BT76 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.26□□□□□ -2.37
UPK3BQ9BT76 Y_RNA.36-201ENST00000362602 112 ntBASIC0.26□□□□□ -2.37
UPK3BQ9BT76 RNU6-1042P-201ENST00000384204 107 ntBASIC0.26□□□□□ -2.37
UPK3BQ9BT76 Y_RNA.553-201ENST00000384670 102 ntBASIC0.26□□□□□ -2.37
UPK3BQ9BT76 AC244098.3-201ENST00000424803 96 ntBASIC0.26□□□□□ -2.37
UPK3BQ9BT76 USP9YP16-201ENST00000430287 407 ntBASIC0.26□□□□□ -2.37
UPK3BQ9BT76 UQCRBP2-201ENST00000447827 297 ntBASIC0.26□□□□□ -2.37
UPK3BQ9BT76 USP9YP23-201ENST00000455085 407 ntBASIC0.26□□□□□ -2.37
UPK3BQ9BT76 AC079467.1-201ENST00000508512 503 ntTSL 3 BASIC0.26□□□□□ -2.37
UPK3BQ9BT76 RN7SKP12-201ENST00000516275 143 ntBASIC0.26□□□□□ -2.37
UPK3BQ9BT76 RNU11-2P-201ENST00000516898 142 ntBASIC0.26□□□□□ -2.37
UPK3BQ9BT76 Y_RNA.706-201ENST00000516933 99 ntBASIC0.26□□□□□ -2.37
UPK3BQ9BT76 AC090617.3-201ENST00000573670 475 ntBASIC0.26□□□□□ -2.37
UPK3BQ9BT76 RNU6-94P-201ENST00000607728 107 ntBASIC0.26□□□□□ -2.37
UPK3BQ9BT76 5S_rRNA.13-201ENST00000622298 123 ntBASIC0.26□□□□□ -2.37
UPK3BQ9BT76 AC068137.3-201ENST00000639191 341 ntBASIC0.26□□□□□ -2.37
UPK3BQ9BT76 SERPINI2-207ENST00000476257 1837 ntAPPRIS P1 TSL 5 BASIC0.26□□□□□ -2.37
UPK3BQ9BT76 AC134026.1-201ENST00000623249 2239 ntBASIC0.26□□□□□ -2.37
UPK3BQ9BT76 PPP2R5A-205ENST00000537030 1719 ntTSL 2 BASIC0.25□□□□□ -2.37
UPK3BQ9BT76 RNU6-117P-201ENST00000365415 107 ntBASIC0.25□□□□□ -2.37
UPK3BQ9BT76 SNORD14.1-201ENST00000365609 90 ntBASIC0.25□□□□□ -2.37
UPK3BQ9BT76 Y_RNA.490-201ENST00000384413 102 ntBASIC0.25□□□□□ -2.37
UPK3BQ9BT76 RNU6-1297P-201ENST00000384415 104 ntBASIC0.25□□□□□ -2.37
UPK3BQ9BT76 Y_RNA.533-201ENST00000384596 114 ntBASIC0.25□□□□□ -2.37
UPK3BQ9BT76 MIR136-201ENST00000385207 82 ntBASIC0.25□□□□□ -2.37
UPK3BQ9BT76 MIR873-201ENST00000401120 77 ntBASIC0.25□□□□□ -2.37
UPK3BQ9BT76 RNU6ATAC33P-201ENST00000408647 126 ntBASIC0.25□□□□□ -2.37
UPK3BQ9BT76 Y_RNA.615-201ENST00000410769 117 ntBASIC0.25□□□□□ -2.37
UPK3BQ9BT76 Y_RNA.621-201ENST00000411065 96 ntBASIC0.25□□□□□ -2.37
UPK3BQ9BT76 MTND3P23-201ENST00000431980 347 ntBASIC0.25□□□□□ -2.37
UPK3BQ9BT76 SEPT14P3-201ENST00000439401 183 ntBASIC0.25□□□□□ -2.37
UPK3BQ9BT76 AL732372.2-207ENST00000445840 183 ntBASIC0.25□□□□□ -2.37
UPK3BQ9BT76 PCNPP5-201ENST00000452246 481 ntBASIC0.25□□□□□ -2.37
UPK3BQ9BT76 SEPT14P2-201ENST00000453405 183 ntBASIC0.25□□□□□ -2.37
UPK3BQ9BT76 SEMA6A-AS1-204ENST00000510682 521 ntTSL 5 BASIC0.25□□□□□ -2.37
UPK3BQ9BT76 SEPT14P4-201ENST00000513445 186 ntBASIC0.25□□□□□ -2.37
UPK3BQ9BT76 RNU6-256P-201ENST00000516747 97 ntBASIC0.25□□□□□ -2.37
UPK3BQ9BT76 FO082796.1-201ENST00000523795 183 ntBASIC0.25□□□□□ -2.37
UPK3BQ9BT76 AF235103.2-201ENST00000525753 346 ntBASIC0.25□□□□□ -2.37
UPK3BQ9BT76 AC036111.3-201ENST00000526389 112 ntBASIC0.25□□□□□ -2.37
UPK3BQ9BT76 AC023442.1-201ENST00000531247 422 ntBASIC0.25□□□□□ -2.37
UPK3BQ9BT76 AC006362.1-201ENST00000567392 174 ntBASIC0.25□□□□□ -2.37
UPK3BQ9BT76 AC138625.1-201ENST00000567556 483 ntTSL 3 BASIC0.25□□□□□ -2.37
UPK3BQ9BT76 AC010525.2-201ENST00000590920 195 ntBASIC0.25□□□□□ -2.37
UPK3BQ9BT76 DISC2.1-201ENST00000612827 205 ntBASIC0.25□□□□□ -2.37
UPK3BQ9BT76 MIR6516-201ENST00000630554 81 ntBASIC0.25□□□□□ -2.37
UPK3BQ9BT76 U6.115-201ENST00000636045 103 ntBASIC0.25□□□□□ -2.37
UPK3BQ9BT76 SNORD113.3-201ENST00000364630 78 ntBASIC0.24□□□□□ -2.37
UPK3BQ9BT76 Y_RNA.359-201ENST00000365498 102 ntBASIC0.24□□□□□ -2.37
UPK3BQ9BT76 Y_RNA.466-201ENST00000384294 113 ntBASIC0.24□□□□□ -2.37
UPK3BQ9BT76 Y_RNA.498-201ENST00000384460 102 ntBASIC0.24□□□□□ -2.37
UPK3BQ9BT76 Y_RNA.530-201ENST00000384587 101 ntBASIC0.24□□□□□ -2.37
UPK3BQ9BT76 MIR516B2-201ENST00000385190 85 ntBASIC0.24□□□□□ -2.37
UPK3BQ9BT76 SNORD105-201ENST00000386910 85 ntBASIC0.24□□□□□ -2.37
UPK3BQ9BT76 MTCO3P40-201ENST00000392516 676 ntBASIC0.24□□□□□ -2.37
UPK3BQ9BT76 ELOCP21-201ENST00000412558 336 ntBASIC0.24□□□□□ -2.37
UPK3BQ9BT76 SUMO1P2-201ENST00000452524 304 ntBASIC0.24□□□□□ -2.37
UPK3BQ9BT76 RNU7-41P-201ENST00000515917 61 ntBASIC0.24□□□□□ -2.37
UPK3BQ9BT76 RNU4-57P-201ENST00000515980 135 ntBASIC0.24□□□□□ -2.37
UPK3BQ9BT76 Y_RNA.665-201ENST00000516177 98 ntBASIC0.24□□□□□ -2.37
UPK3BQ9BT76 Y_RNA.693-201ENST00000516641 110 ntBASIC0.24□□□□□ -2.37
UPK3BQ9BT76 AL512360.1-201ENST00000555346 234 ntBASIC0.24□□□□□ -2.37
UPK3BQ9BT76 MIR4764-201ENST00000580680 88 ntBASIC0.24□□□□□ -2.37
UPK3BQ9BT76 MIR4300-201ENST00000581016 96 ntBASIC0.24□□□□□ -2.37
UPK3BQ9BT76 AC100812.1-201ENST00000607622 580 ntBASIC0.24□□□□□ -2.37
UPK3BQ9BT76 ZNF299P-201ENST00000406845 1804 ntBASIC0.24□□□□□ -2.37
UPK3BQ9BT76 MIR1-1-201ENST00000362147 71 ntBASIC0.23□□□□□ -2.37
UPK3BQ9BT76 Y_RNA.106-201ENST00000363189 100 ntBASIC0.23□□□□□ -2.37
UPK3BQ9BT76 RNU6-595P-201ENST00000363944 107 ntBASIC0.23□□□□□ -2.37
UPK3BQ9BT76 RNA5SP48-201ENST00000363969 126 ntBASIC0.23□□□□□ -2.37
UPK3BQ9BT76 RNU6-596P-201ENST00000365395 98 ntBASIC0.23□□□□□ -2.37
UPK3BQ9BT76 MIR329-1-201ENST00000385028 80 ntBASIC0.23□□□□□ -2.37
UPK3BQ9BT76 MIR15B-201ENST00000385045 98 ntBASIC0.23□□□□□ -2.37
UPK3BQ9BT76 RNA5SP475-201ENST00000410568 110 ntBASIC0.23□□□□□ -2.37
UPK3BQ9BT76 MTCO2P12-201ENST00000427426 682 ntBASIC0.23□□□□□ -2.37
UPK3BQ9BT76 AC027343.1-201ENST00000504765 407 ntTSL 4 BASIC0.23□□□□□ -2.37
UPK3BQ9BT76 AC074133.1-201ENST00000515696 183 ntBASIC0.23□□□□□ -2.37
Retrieved 100 of 98,524 protein–RNA pairs in 115.4 ms