Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 RPS27P1-201ENST00000450552 247 ntBASIC1.57□□□□□ -2.16
CCDC3Q9BQI4 HSPE1P13-201ENST00000451143 297 ntBASIC1.57□□□□□ -2.16
CCDC3Q9BQI4 AC025465.3-201ENST00000510570 311 ntBASIC1.57□□□□□ -2.16
CCDC3Q9BQI4 AC097462.1-201ENST00000514125 324 ntBASIC1.57□□□□□ -2.16
CCDC3Q9BQI4 RNA5SP20-201ENST00000515976 84 ntBASIC1.57□□□□□ -2.16
CCDC3Q9BQI4 SNORA70.12-201ENST00000516084 153 ntBASIC1.57□□□□□ -2.16
CCDC3Q9BQI4 Y_RNA.701-201ENST00000516812 110 ntBASIC1.57□□□□□ -2.16
CCDC3Q9BQI4 RNA5SP437-201ENST00000517249 129 ntBASIC1.57□□□□□ -2.16
CCDC3Q9BQI4 AC055872.1-201ENST00000570978 278 ntBASIC1.57□□□□□ -2.16
CCDC3Q9BQI4 AC006380.1-201ENST00000603598 186 ntBASIC1.57□□□□□ -2.16
CCDC3Q9BQI4 FSIP2-202ENST00000424728 20788 ntAPPRIS P2 TSL 5 BASIC1.57□□□□□ -2.16
CCDC3Q9BQI4 Y_RNA.101-201ENST00000363154 102 ntBASIC1.56□□□□□ -2.16
CCDC3Q9BQI4 RNU1-42P-201ENST00000364033 160 ntBASIC1.56□□□□□ -2.16
CCDC3Q9BQI4 Y_RNA.394-201ENST00000383942 103 ntBASIC1.56□□□□□ -2.16
CCDC3Q9BQI4 RNU6-1227P-201ENST00000383981 107 ntBASIC1.56□□□□□ -2.16
CCDC3Q9BQI4 HSPE1P9-201ENST00000440046 311 ntBASIC1.56□□□□□ -2.16
CCDC3Q9BQI4 RPS26P55-201ENST00000471178 356 ntBASIC1.56□□□□□ -2.16
CCDC3Q9BQI4 RPS27P22-201ENST00000478056 241 ntBASIC1.56□□□□□ -2.16
CCDC3Q9BQI4 RPL36AP21-201ENST00000490372 323 ntBASIC1.56□□□□□ -2.16
CCDC3Q9BQI4 AC020661.2-201ENST00000560114 134 ntBASIC1.56□□□□□ -2.16
CCDC3Q9BQI4 AL645939.4-201ENST00000604495 135 ntBASIC1.56□□□□□ -2.16
CCDC3Q9BQI4 PRPSAP2-229ENST00000628609 192 ntTSL 5 BASIC1.56□□□□□ -2.16
CCDC3Q9BQI4 AC008163.1-205ENST00000413944 4649 ntTSL 1 (best) BASIC1.56□□□□□ -2.16
CCDC3Q9BQI4 AC091812.1-201ENST00000432235 1948 ntBASIC1.56□□□□□ -2.16
CCDC3Q9BQI4 RNY1P10-201ENST00000363268 113 ntBASIC1.55□□□□□ -2.16
CCDC3Q9BQI4 Y_RNA.138-201ENST00000363462 102 ntBASIC1.55□□□□□ -2.16
CCDC3Q9BQI4 Y_RNA.813-201ENST00000364639 102 ntBASIC1.55□□□□□ -2.16
CCDC3Q9BQI4 RNU6-60P-201ENST00000364792 103 ntBASIC1.55□□□□□ -2.16
CCDC3Q9BQI4 RNU6-117P-201ENST00000365415 107 ntBASIC1.55□□□□□ -2.16
CCDC3Q9BQI4 Y_RNA.380-201ENST00000365663 111 ntBASIC1.55□□□□□ -2.16
CCDC3Q9BQI4 Y_RNA.424-201ENST00000384063 103 ntBASIC1.55□□□□□ -2.16
CCDC3Q9BQI4 Y_RNA.439-201ENST00000384119 94 ntBASIC1.55□□□□□ -2.16
CCDC3Q9BQI4 Y_RNA.471-201ENST00000384312 102 ntBASIC1.55□□□□□ -2.16
CCDC3Q9BQI4 Y_RNA.485-201ENST00000384395 102 ntBASIC1.55□□□□□ -2.16
CCDC3Q9BQI4 Y_RNA.645-201ENST00000391229 102 ntBASIC1.55□□□□□ -2.16
CCDC3Q9BQI4 RN7SKP101-201ENST00000411376 320 ntBASIC1.55□□□□□ -2.16
CCDC3Q9BQI4 AC005002.2-201ENST00000438228 269 ntBASIC1.55□□□□□ -2.16
CCDC3Q9BQI4 RPEP5-201ENST00000441137 268 ntBASIC1.55□□□□□ -2.16
CCDC3Q9BQI4 AC007991.3-201ENST00000517623 502 ntTSL 4 BASIC1.55□□□□□ -2.16
CCDC3Q9BQI4 AC126177.2-201ENST00000552154 452 ntTSL 3 BASIC1.55□□□□□ -2.16
CCDC3Q9BQI4 AC011476.5-201ENST00000615594 130 ntBASIC1.55□□□□□ -2.16
CCDC3Q9BQI4 LINC00643-201ENST00000334389 3247 ntTSL 2 BASIC1.55□□□□□ -2.16
CCDC3Q9BQI4 FSIP2-206ENST00000611759 3882 ntAPPRIS ALT2 TSL 5 BASIC1.55□□□□□ -2.16
CCDC3Q9BQI4 AC018630.2-201ENST00000534866 2403 ntBASIC1.55□□□□□ -2.16
CCDC3Q9BQI4 Y_RNA.158-201ENST00000363651 101 ntBASIC1.54□□□□□ -2.16
CCDC3Q9BQI4 Y_RNA.446-201ENST00000384178 104 ntBASIC1.54□□□□□ -2.16
CCDC3Q9BQI4 MIR30A-201ENST00000385092 71 ntBASIC1.54□□□□□ -2.16
CCDC3Q9BQI4 MRPL42P3-201ENST00000401492 326 ntBASIC1.54□□□□□ -2.16
CCDC3Q9BQI4 MIR1287-201ENST00000408492 90 ntBASIC1.54□□□□□ -2.16
CCDC3Q9BQI4 RNU2-7P-201ENST00000410794 178 ntBASIC1.54□□□□□ -2.16
CCDC3Q9BQI4 AL161935.2-201ENST00000414627 60 ntBASIC1.54□□□□□ -2.16
CCDC3Q9BQI4 AC078980.1-201ENST00000485384 262 ntTSL 2 BASIC1.54□□□□□ -2.16
CCDC3Q9BQI4 AC008834.1-201ENST00000511612 175 ntBASIC1.54□□□□□ -2.16
CCDC3Q9BQI4 RNU7-172P-201ENST00000517125 64 ntBASIC1.54□□□□□ -2.16
CCDC3Q9BQI4 AC087518.1-201ENST00000524098 187 ntTSL 3 BASIC1.54□□□□□ -2.16
CCDC3Q9BQI4 AC084882.1-201ENST00000561254 555 ntTSL 4 BASIC1.54□□□□□ -2.16
CCDC3Q9BQI4 AC022217.4-201ENST00000604389 163 ntBASIC1.54□□□□□ -2.16
CCDC3Q9BQI4 BX248123.2-201ENST00000606318 124 ntBASIC1.54□□□□□ -2.16
CCDC3Q9BQI4 MIR8074-201ENST00000615081 81 ntBASIC1.54□□□□□ -2.16
CCDC3Q9BQI4 FANCD2-213ENST00000625535 117 ntTSL 5 BASIC1.54□□□□□ -2.16
CCDC3Q9BQI4 UHRF1BP1L-203ENST00000545232 4088 ntTSL 1 (best) BASIC1.54□□□□□ -2.16
CCDC3Q9BQI4 Y_RNA.202-201ENST00000364083 110 ntBASIC1.53□□□□□ -2.16
CCDC3Q9BQI4 SNORD48-201ENST00000364953 64 ntBASIC1.53□□□□□ -2.16
CCDC3Q9BQI4 RNU6-823P-201ENST00000391042 103 ntBASIC1.53□□□□□ -2.16
CCDC3Q9BQI4 SNORA67.6-201ENST00000391093 99 ntBASIC1.53□□□□□ -2.16
CCDC3Q9BQI4 MIR1252-201ENST00000408861 65 ntBASIC1.53□□□□□ -2.16
CCDC3Q9BQI4 RNU6-1186P-201ENST00000410429 97 ntBASIC1.53□□□□□ -2.16
CCDC3Q9BQI4 AC073323.1-201ENST00000419832 451 ntTSL 2 BASIC1.53□□□□□ -2.16
CCDC3Q9BQI4 AC005534.2-201ENST00000431047 433 ntBASIC1.53□□□□□ -2.16
CCDC3Q9BQI4 JTBP1-201ENST00000441314 247 ntBASIC1.53□□□□□ -2.16
CCDC3Q9BQI4 AC073910.1-201ENST00000445047 438 ntBASIC1.53□□□□□ -2.16
CCDC3Q9BQI4 AC005042.3-201ENST00000453230 174 ntBASIC1.53□□□□□ -2.16
CCDC3Q9BQI4 snoU13.27-201ENST00000459278 104 ntBASIC1.53□□□□□ -2.16
CCDC3Q9BQI4 RNU6-1278P-201ENST00000516130 107 ntBASIC1.53□□□□□ -2.16
CCDC3Q9BQI4 AL358944.1-201ENST00000528537 144 ntBASIC1.53□□□□□ -2.16
CCDC3Q9BQI4 AC023157.2-201ENST00000540596 141 ntBASIC1.53□□□□□ -2.16
CCDC3Q9BQI4 RPL21P9-201ENST00000556149 474 ntBASIC1.53□□□□□ -2.16
CCDC3Q9BQI4 SNORA77B-201ENST00000578179 125 ntBASIC1.53□□□□□ -2.16
CCDC3Q9BQI4 MIR3171-201ENST00000584270 74 ntBASIC1.53□□□□□ -2.16
CCDC3Q9BQI4 AL162424.1-201ENST00000602325 221 ntBASIC1.53□□□□□ -2.16
CCDC3Q9BQI4 AC104695.3-201ENST00000604052 296 ntBASIC1.53□□□□□ -2.16
CCDC3Q9BQI4 GNAS-AS1_4.1-201ENST00000616546 112 ntBASIC1.53□□□□□ -2.16
CCDC3Q9BQI4 5S_rRNA.13-201ENST00000622298 123 ntBASIC1.53□□□□□ -2.16
CCDC3Q9BQI4 AC127459.3-201ENST00000624328 466 ntBASIC1.53□□□□□ -2.16
CCDC3Q9BQI4 Y_RNA.276-201ENST00000364732 109 ntBASIC1.52□□□□□ -2.17
CCDC3Q9BQI4 SNORA22B-201ENST00000383876 138 ntBASIC1.52□□□□□ -2.17
CCDC3Q9BQI4 RNU6-997P-201ENST00000384725 107 ntBASIC1.52□□□□□ -2.17
CCDC3Q9BQI4 TRAJ39-201ENST00000390498 63 ntAPPRIS P1 BASIC1.52□□□□□ -2.17
CCDC3Q9BQI4 RNU6-308P-201ENST00000390957 107 ntBASIC1.52□□□□□ -2.17
CCDC3Q9BQI4 RPL21P1-201ENST00000399532 476 ntBASIC1.52□□□□□ -2.17
CCDC3Q9BQI4 AL031003.1-201ENST00000404229 172 ntBASIC1.52□□□□□ -2.17
CCDC3Q9BQI4 RNU2-61P-201ENST00000411069 191 ntBASIC1.52□□□□□ -2.17
CCDC3Q9BQI4 AC004965.1-201ENST00000413033 213 ntBASIC1.52□□□□□ -2.17
CCDC3Q9BQI4 AC009474.2-201ENST00000451383 136 ntBASIC1.52□□□□□ -2.17
CCDC3Q9BQI4 RNU6-436P-201ENST00000516171 114 ntBASIC1.52□□□□□ -2.17
CCDC3Q9BQI4 RNU6-341P-201ENST00000516973 96 ntBASIC1.52□□□□□ -2.17
CCDC3Q9BQI4 Y_RNA.715-201ENST00000517082 110 ntBASIC1.52□□□□□ -2.17
CCDC3Q9BQI4 AL356133.2-201ENST00000521572 371 ntTSL 3 BASIC1.52□□□□□ -2.17
CCDC3Q9BQI4 AC092490.2-202ENST00000544922 462 ntTSL 3 BASIC1.52□□□□□ -2.17
CCDC3Q9BQI4 AC015720.1-201ENST00000565251 277 ntBASIC1.52□□□□□ -2.17
Retrieved 100 of 98,524 protein–RNA pairs in 181.6 ms