Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 NCRUPAR_2.1-201ENST00000616308 99 ntBASIC0.5□□□□□ -2.33
LMX1AQ8TE12 uc_338.17-201ENST00000619633 179 ntBASIC0.5□□□□□ -2.33
LMX1AQ8TE12 DEUP1-202ENST00000525646 1920 ntTSL 1 (best) BASIC0.5□□□□□ -2.33
LMX1AQ8TE12 CASC19-280ENST00000642102 1351 ntBASIC0.49□□□□□ -2.33
LMX1AQ8TE12 SNORD114-7-201ENST00000362520 77 ntBASIC0.49□□□□□ -2.33
LMX1AQ8TE12 RNU6-833P-201ENST00000363486 107 ntBASIC0.49□□□□□ -2.33
LMX1AQ8TE12 RNA5SP457-201ENST00000363657 124 ntBASIC0.49□□□□□ -2.33
LMX1AQ8TE12 RNU6-1264P-201ENST00000383891 107 ntBASIC0.49□□□□□ -2.33
LMX1AQ8TE12 RNU6-110P-201ENST00000384508 104 ntBASIC0.49□□□□□ -2.33
LMX1AQ8TE12 SNORA75.2-201ENST00000391138 150 ntBASIC0.49□□□□□ -2.33
LMX1AQ8TE12 SNORA75.3-201ENST00000391231 150 ntBASIC0.49□□□□□ -2.33
LMX1AQ8TE12 RNU2-16P-201ENST00000410712 136 ntBASIC0.49□□□□□ -2.33
LMX1AQ8TE12 RPS3AP1-201ENST00000413190 320 ntBASIC0.49□□□□□ -2.33
LMX1AQ8TE12 AL121872.1-201ENST00000420327 281 ntTSL 5 BASIC0.49□□□□□ -2.33
LMX1AQ8TE12 LINC01866-201ENST00000421181 201 ntTSL 3 BASIC0.49□□□□□ -2.33
LMX1AQ8TE12 AC114737.2-201ENST00000421583 173 ntBASIC0.49□□□□□ -2.33
LMX1AQ8TE12 USMG5P1-201ENST00000425964 177 ntBASIC0.49□□□□□ -2.33
LMX1AQ8TE12 AC012445.1-201ENST00000442831 607 ntTSL 3 BASIC0.49□□□□□ -2.33
LMX1AQ8TE12 AL137792.2-201ENST00000443484 235 ntBASIC0.49□□□□□ -2.33
LMX1AQ8TE12 AC073127.1-201ENST00000447336 333 ntTSL 3 BASIC0.49□□□□□ -2.33
LMX1AQ8TE12 AL121580.1-201ENST00000449941 219 ntTSL 3 BASIC0.49□□□□□ -2.33
LMX1AQ8TE12 RNA5SP20-201ENST00000515976 84 ntBASIC0.49□□□□□ -2.33
LMX1AQ8TE12 RNU7-12P-201ENST00000516030 62 ntBASIC0.49□□□□□ -2.33
LMX1AQ8TE12 RNU6-864P-201ENST00000516256 108 ntBASIC0.49□□□□□ -2.33
LMX1AQ8TE12 AC027419.1-201ENST00000522976 328 ntBASIC0.49□□□□□ -2.33
LMX1AQ8TE12 RPL21P9-201ENST00000556149 474 ntBASIC0.49□□□□□ -2.33
LMX1AQ8TE12 AC084882.1-201ENST00000561254 555 ntTSL 4 BASIC0.49□□□□□ -2.33
LMX1AQ8TE12 MIR5701-3-201ENST00000578890 82 ntBASIC0.49□□□□□ -2.33
LMX1AQ8TE12 MIR5701-1-201ENST00000585138 82 ntBASIC0.49□□□□□ -2.33
LMX1AQ8TE12 MIR3942-201ENST00000585264 109 ntBASIC0.49□□□□□ -2.33
LMX1AQ8TE12 MIR5701-2-201ENST00000615634 82 ntBASIC0.49□□□□□ -2.33
LMX1AQ8TE12 AC024614.3-201ENST00000637860 256 ntBASIC0.49□□□□□ -2.33
LMX1AQ8TE12 RNU6-842P-201ENST00000384269 107 ntBASIC0.48□□□□□ -2.33
LMX1AQ8TE12 MIR526A1-201ENST00000384897 85 ntBASIC0.48□□□□□ -2.33
LMX1AQ8TE12 RNU6-733P-201ENST00000410759 104 ntBASIC0.48□□□□□ -2.33
LMX1AQ8TE12 MTND3P21-201ENST00000433774 331 ntBASIC0.48□□□□□ -2.33
LMX1AQ8TE12 RPL39P39-201ENST00000455840 151 ntBASIC0.48□□□□□ -2.33
LMX1AQ8TE12 AC245047.8-201ENST00000456455 284 ntBASIC0.48□□□□□ -2.33
LMX1AQ8TE12 SNORD5.1-201ENST00000458800 75 ntBASIC0.48□□□□□ -2.33
LMX1AQ8TE12 RNU7-90P-201ENST00000459216 62 ntBASIC0.48□□□□□ -2.33
LMX1AQ8TE12 AC122707.1-201ENST00000502882 219 ntTSL 2 BASIC0.48□□□□□ -2.33
LMX1AQ8TE12 AC074133.1-201ENST00000515696 183 ntBASIC0.48□□□□□ -2.33
LMX1AQ8TE12 RNU6-947P-201ENST00000516264 106 ntBASIC0.48□□□□□ -2.33
LMX1AQ8TE12 AC125232.2-201ENST00000592457 143 ntBASIC0.48□□□□□ -2.33
LMX1AQ8TE12 AC243829.6-201ENST00000612652 106 ntBASIC0.48□□□□□ -2.33
LMX1AQ8TE12 TRAJ36-201ENST00000614481 58 ntAPPRIS P1 BASIC0.48□□□□□ -2.33
LMX1AQ8TE12 AC109471.3-201ENST00000625219 233 ntTSL 5 BASIC0.48□□□□□ -2.33
LMX1AQ8TE12 U6.115-201ENST00000636045 103 ntBASIC0.48□□□□□ -2.33
LMX1AQ8TE12 Y_RNA.361-201ENST00000365515 120 ntBASIC0.47□□□□□ -2.33
LMX1AQ8TE12 SNORD116-13-201ENST00000384408 92 ntBASIC0.47□□□□□ -2.33
LMX1AQ8TE12 RPS26P5-201ENST00000418544 335 ntBASIC0.47□□□□□ -2.33
LMX1AQ8TE12 AC018865.2-201ENST00000423631 129 ntBASIC0.47□□□□□ -2.33
LMX1AQ8TE12 MTND1P17-201ENST00000448961 204 ntBASIC0.47□□□□□ -2.33
LMX1AQ8TE12 RPS20P10-201ENST00000451209 253 ntBASIC0.47□□□□□ -2.33
LMX1AQ8TE12 AC098826.2-201ENST00000452011 651 ntBASIC0.47□□□□□ -2.33
LMX1AQ8TE12 LINC01399-202ENST00000458450 244 ntBASIC0.47□□□□□ -2.33
LMX1AQ8TE12 COX6CP6-201ENST00000490840 228 ntBASIC0.47□□□□□ -2.33
LMX1AQ8TE12 AC018710.1-201ENST00000506509 158 ntBASIC0.47□□□□□ -2.33
LMX1AQ8TE12 RNU2-56P-201ENST00000516826 190 ntBASIC0.47□□□□□ -2.33
LMX1AQ8TE12 RNU6-1088P-201ENST00000516850 104 ntBASIC0.47□□□□□ -2.33
LMX1AQ8TE12 AC022868.1-201ENST00000517767 391 ntBASIC0.47□□□□□ -2.33
LMX1AQ8TE12 AC026407.1-201ENST00000518369 204 ntBASIC0.47□□□□□ -2.33
LMX1AQ8TE12 LINC02398-201ENST00000536666 431 ntTSL 3 BASIC0.47□□□□□ -2.33
LMX1AQ8TE12 AC093023.1-201ENST00000547375 507 ntBASIC0.47□□□□□ -2.33
LMX1AQ8TE12 AC090617.3-201ENST00000573670 475 ntBASIC0.47□□□□□ -2.33
LMX1AQ8TE12 MIR3192-201ENST00000584920 77 ntBASIC0.47□□□□□ -2.33
LMX1AQ8TE12 AL357075.2-201ENST00000614906 189 ntBASIC0.47□□□□□ -2.33
LMX1AQ8TE12 AC027279.3-201ENST00000625055 122 ntBASIC0.47□□□□□ -2.33
LMX1AQ8TE12 MT-ND4-201ENST00000361381 1378 ntAPPRIS P1 BASIC0.46□□□□□ -2.34
LMX1AQ8TE12 ANKRD30BP1-201ENST00000451052 2186 ntBASIC0.46□□□□□ -2.34
LMX1AQ8TE12 AC068700.1-201ENST00000565862 3754 ntBASIC0.46□□□□□ -2.34
LMX1AQ8TE12 CXADR-202ENST00000356275 270 ntTSL 1 (best) BASIC0.46□□□□□ -2.34
LMX1AQ8TE12 Y_RNA.106-201ENST00000363189 100 ntBASIC0.46□□□□□ -2.34
LMX1AQ8TE12 RNU4-12P-201ENST00000365233 139 ntBASIC0.46□□□□□ -2.34
LMX1AQ8TE12 LINC00583-201ENST00000381010 387 ntTSL 2 BASIC0.46□□□□□ -2.34
LMX1AQ8TE12 SNORA50A-201ENST00000384225 134 ntBASIC0.46□□□□□ -2.34
LMX1AQ8TE12 RNU6-306P-201ENST00000384617 107 ntBASIC0.46□□□□□ -2.34
LMX1AQ8TE12 RNU6-1148P-201ENST00000410992 104 ntBASIC0.46□□□□□ -2.34
LMX1AQ8TE12 AL353747.2-201ENST00000439207 205 ntTSL 3 BASIC0.46□□□□□ -2.34
LMX1AQ8TE12 AC090510.1-201ENST00000567456 425 ntTSL 3 BASIC0.46□□□□□ -2.34
LMX1AQ8TE12 MIR4273-201ENST00000582824 84 ntBASIC0.46□□□□□ -2.34
LMX1AQ8TE12 AL353765.1-201ENST00000605514 183 ntBASIC0.46□□□□□ -2.34
LMX1AQ8TE12 AC100812.1-201ENST00000607622 580 ntBASIC0.46□□□□□ -2.34
LMX1AQ8TE12 MIR8087-201ENST00000612745 78 ntBASIC0.46□□□□□ -2.34
LMX1AQ8TE12 MTND5P16-201ENST00000460269 1703 ntBASIC0.45□□□□□ -2.34
LMX1AQ8TE12 MIR330-201ENST00000362196 94 ntBASIC0.45□□□□□ -2.34
LMX1AQ8TE12 RNU6-222P-201ENST00000362438 107 ntBASIC0.45□□□□□ -2.34
LMX1AQ8TE12 Y_RNA.41-201ENST00000362646 102 ntBASIC0.45□□□□□ -2.34
LMX1AQ8TE12 RNA5SP361-201ENST00000362686 118 ntBASIC0.45□□□□□ -2.34
LMX1AQ8TE12 Y_RNA.115-201ENST00000363272 98 ntBASIC0.45□□□□□ -2.34
LMX1AQ8TE12 RNU6-454P-201ENST00000364292 107 ntBASIC0.45□□□□□ -2.34
LMX1AQ8TE12 Y_RNA.243-201ENST00000364481 109 ntBASIC0.45□□□□□ -2.34
LMX1AQ8TE12 Y_RNA.267-201ENST00000364679 109 ntBASIC0.45□□□□□ -2.34
LMX1AQ8TE12 Y_RNA.336-201ENST00000365307 109 ntBASIC0.45□□□□□ -2.34
LMX1AQ8TE12 VTRNA1-3-201ENST00000365645 89 ntBASIC0.45□□□□□ -2.34
LMX1AQ8TE12 MIR520G-201ENST00000385064 90 ntBASIC0.45□□□□□ -2.34
LMX1AQ8TE12 MIR942-201ENST00000401111 86 ntBASIC0.45□□□□□ -2.34
LMX1AQ8TE12 RNU6-373P-201ENST00000411247 98 ntBASIC0.45□□□□□ -2.34
LMX1AQ8TE12 RNU6-1001P-201ENST00000411265 100 ntBASIC0.45□□□□□ -2.34
LMX1AQ8TE12 AL590730.1-201ENST00000426283 398 ntTSL 3 BASIC0.45□□□□□ -2.34
Retrieved 100 of 98,524 protein–RNA pairs in 149.9 ms