Protein–RNA interactions for Protein: Q8IVD9

NUDCD3, NudC domain-containing protein 3, humanhuman

Predictions only

Length 361 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUDCD3Q8IVD9 AC092423.1-201ENST00000430165 186 ntBASIC0.82□□□□□ -2.28
NUDCD3Q8IVD9 Z98949.2-201ENST00000440996 144 ntBASIC0.82□□□□□ -2.28
NUDCD3Q8IVD9 RPL39P39-201ENST00000455840 151 ntBASIC0.82□□□□□ -2.28
NUDCD3Q8IVD9 SNORA40.9-201ENST00000515895 93 ntBASIC0.82□□□□□ -2.28
NUDCD3Q8IVD9 Y_RNA.708-201ENST00000516950 96 ntBASIC0.82□□□□□ -2.28
NUDCD3Q8IVD9 RNU6-1096P-201ENST00000517089 102 ntBASIC0.82□□□□□ -2.28
NUDCD3Q8IVD9 AC025580.2-205ENST00000559960 552 ntTSL 4 BASIC0.82□□□□□ -2.28
NUDCD3Q8IVD9 FAM71BP1-201ENST00000604431 523 ntBASIC0.82□□□□□ -2.28
NUDCD3Q8IVD9 AC211469.2-201ENST00000605461 205 ntBASIC0.82□□□□□ -2.28
NUDCD3Q8IVD9 AC005828.6-201ENST00000606610 232 ntBASIC0.82□□□□□ -2.28
NUDCD3Q8IVD9 AC093783.1-201ENST00000612976 329 ntBASIC0.82□□□□□ -2.28
NUDCD3Q8IVD9 5S_rRNA.13-201ENST00000622298 123 ntBASIC0.82□□□□□ -2.28
NUDCD3Q8IVD9 RNU4-41P-201ENST00000364426 143 ntBASIC0.81□□□□□ -2.28
NUDCD3Q8IVD9 RNU6-601P-201ENST00000384540 107 ntBASIC0.81□□□□□ -2.28
NUDCD3Q8IVD9 MIR526A1-201ENST00000384897 85 ntBASIC0.81□□□□□ -2.28
NUDCD3Q8IVD9 MIR532-201ENST00000385025 91 ntBASIC0.81□□□□□ -2.28
NUDCD3Q8IVD9 RNA5SP475-201ENST00000410568 110 ntBASIC0.81□□□□□ -2.28
NUDCD3Q8IVD9 AL049830.1-201ENST00000468034 425 ntBASIC0.81□□□□□ -2.28
NUDCD3Q8IVD9 RPS26P48-201ENST00000491713 339 ntBASIC0.81□□□□□ -2.28
NUDCD3Q8IVD9 RNU6-63P-201ENST00000516690 95 ntBASIC0.81□□□□□ -2.28
NUDCD3Q8IVD9 LINC02425-201ENST00000536217 376 ntTSL 3 BASIC0.81□□□□□ -2.28
NUDCD3Q8IVD9 AP003174.2-201ENST00000544663 294 ntTSL 3 BASIC0.81□□□□□ -2.28
NUDCD3Q8IVD9 AL121821.1-201ENST00000557067 530 ntTSL 3 BASIC0.81□□□□□ -2.28
NUDCD3Q8IVD9 ZNF415-224ENST00000601493 2132 ntTSL 1 (best) BASIC0.81□□□□□ -2.28
NUDCD3Q8IVD9 AC106800.4-201ENST00000614905 153 ntBASIC0.81□□□□□ -2.28
NUDCD3Q8IVD9 Y_RNA.404-201ENST00000383978 102 ntBASIC0.8□□□□□ -2.28
NUDCD3Q8IVD9 SNORA80D-201ENST00000384488 135 ntBASIC0.8□□□□□ -2.28
NUDCD3Q8IVD9 MIR520G-201ENST00000385064 90 ntBASIC0.8□□□□□ -2.28
NUDCD3Q8IVD9 MIR100-201ENST00000385259 80 ntBASIC0.8□□□□□ -2.28
NUDCD3Q8IVD9 MIR1277-201ENST00000408536 78 ntBASIC0.8□□□□□ -2.28
NUDCD3Q8IVD9 MTND3P8-201ENST00000412909 339 ntBASIC0.8□□□□□ -2.28
NUDCD3Q8IVD9 AC114482.1-201ENST00000418010 247 ntBASIC0.8□□□□□ -2.28
NUDCD3Q8IVD9 AL356010.2-201ENST00000422844 197 ntTSL 3 BASIC0.8□□□□□ -2.28
NUDCD3Q8IVD9 MTND3P10-201ENST00000450967 341 ntBASIC0.8□□□□□ -2.28
NUDCD3Q8IVD9 AC008243.1-201ENST00000504955 389 ntTSL 3 BASIC0.8□□□□□ -2.28
NUDCD3Q8IVD9 UBE2E2-206ENST00000613545 282 ntTSL 5 BASIC0.8□□□□□ -2.28
NUDCD3Q8IVD9 KLRA1P-203ENST00000535939 2353 ntTSL 1 (best) BASIC0.8□□□□□ -2.28
NUDCD3Q8IVD9 SNORD114-24-201ENST00000365029 72 ntBASIC0.79□□□□□ -2.28
NUDCD3Q8IVD9 Y_RNA.339-201ENST00000365325 102 ntBASIC0.79□□□□□ -2.28
NUDCD3Q8IVD9 DEFB134-201ENST00000382205 314 ntAPPRIS P1 TSL 1 (best) BASIC0.79□□□□□ -2.28
NUDCD3Q8IVD9 RNU6-969P-201ENST00000383900 105 ntBASIC0.79□□□□□ -2.28
NUDCD3Q8IVD9 AC107399.1-201ENST00000451226 265 ntBASIC0.79□□□□□ -2.28
NUDCD3Q8IVD9 AC084882.1-201ENST00000561254 555 ntTSL 4 BASIC0.79□□□□□ -2.28
NUDCD3Q8IVD9 FAM106DP-201ENST00000586416 501 ntBASIC0.79□□□□□ -2.28
NUDCD3Q8IVD9 AL096861.1-201ENST00000610899 123 ntBASIC0.79□□□□□ -2.28
NUDCD3Q8IVD9 MIR1244-1-201ENST00000612829 85 ntBASIC0.79□□□□□ -2.28
NUDCD3Q8IVD9 AC002553.4-201ENST00000616896 331 ntBASIC0.79□□□□□ -2.28
NUDCD3Q8IVD9 MIR1244-3-201ENST00000635744 85 ntBASIC0.79□□□□□ -2.28
NUDCD3Q8IVD9 MIR1244-2-201ENST00000636449 85 ntBASIC0.79□□□□□ -2.28
NUDCD3Q8IVD9 MIR1244-4-202ENST00000636813 85 ntBASIC0.79□□□□□ -2.28
NUDCD3Q8IVD9 AC008163.1-202ENST00000636004 2889 ntBASIC0.78□□□□□ -2.28
NUDCD3Q8IVD9 Y_RNA.243-201ENST00000364481 109 ntBASIC0.78□□□□□ -2.28
NUDCD3Q8IVD9 RNU6-1080P-201ENST00000383982 107 ntBASIC0.78□□□□□ -2.28
NUDCD3Q8IVD9 RNU6ATAC27P-201ENST00000408289 119 ntBASIC0.78□□□□□ -2.28
NUDCD3Q8IVD9 AL606490.4-201ENST00000423117 127 ntBASIC0.78□□□□□ -2.28
NUDCD3Q8IVD9 AL353614.1-201ENST00000445631 206 ntTSL 5 BASIC0.78□□□□□ -2.28
NUDCD3Q8IVD9 RPS4XP11-201ENST00000446897 772 ntBASIC0.78□□□□□ -2.28
NUDCD3Q8IVD9 AC009468.2-201ENST00000457372 366 ntTSL 5 BASIC0.78□□□□□ -2.28
NUDCD3Q8IVD9 LINC01399-202ENST00000458450 244 ntBASIC0.78□□□□□ -2.28
NUDCD3Q8IVD9 AC011352.1-201ENST00000512300 793 ntBASIC0.78□□□□□ -2.28
NUDCD3Q8IVD9 SNORD111.1-201ENST00000516421 86 ntBASIC0.78□□□□□ -2.28
NUDCD3Q8IVD9 AF235103.2-201ENST00000525753 346 ntBASIC0.78□□□□□ -2.28
NUDCD3Q8IVD9 AL358944.1-201ENST00000528537 144 ntBASIC0.78□□□□□ -2.28
NUDCD3Q8IVD9 MIR4698-201ENST00000577795 80 ntBASIC0.78□□□□□ -2.28
NUDCD3Q8IVD9 AP005120.1-201ENST00000579321 352 ntTSL 3 BASIC0.78□□□□□ -2.28
NUDCD3Q8IVD9 AC090371.2-202ENST00000582239 644 ntTSL 5 BASIC0.78□□□□□ -2.28
NUDCD3Q8IVD9 AC004832.4-201ENST00000608952 331 ntBASIC0.78□□□□□ -2.28
NUDCD3Q8IVD9 RNU6-1301P-201ENST00000362724 104 ntBASIC0.77□□□□□ -2.29
NUDCD3Q8IVD9 Y_RNA.88-201ENST00000363029 99 ntBASIC0.77□□□□□ -2.29
NUDCD3Q8IVD9 Y_RNA.482-201ENST00000384377 111 ntBASIC0.77□□□□□ -2.29
NUDCD3Q8IVD9 MIR891A-201ENST00000401237 79 ntBASIC0.77□□□□□ -2.29
NUDCD3Q8IVD9 SNORD12B-201ENST00000410433 91 ntBASIC0.77□□□□□ -2.29
NUDCD3Q8IVD9 AC078851.1-201ENST00000415918 298 ntTSL 3 BASIC0.77□□□□□ -2.29
NUDCD3Q8IVD9 LINC02238-202ENST00000436262 320 ntTSL 3 BASIC0.77□□□□□ -2.29
NUDCD3Q8IVD9 AL035634.1-201ENST00000446768 372 ntTSL 2 BASIC0.77□□□□□ -2.29
NUDCD3Q8IVD9 AL590422.1-201ENST00000451829 364 ntTSL 3 BASIC0.77□□□□□ -2.29
NUDCD3Q8IVD9 SUMO1P2-201ENST00000452524 304 ntBASIC0.77□□□□□ -2.29
NUDCD3Q8IVD9 snoU13.25-201ENST00000458945 104 ntBASIC0.77□□□□□ -2.29
NUDCD3Q8IVD9 AC069439.1-201ENST00000494739 167 ntBASIC0.77□□□□□ -2.29
NUDCD3Q8IVD9 AC122707.1-201ENST00000502882 219 ntTSL 2 BASIC0.77□□□□□ -2.29
NUDCD3Q8IVD9 PDCD5P2-201ENST00000507570 312 ntBASIC0.77□□□□□ -2.29
NUDCD3Q8IVD9 PSMC1P5-201ENST00000512850 177 ntBASIC0.77□□□□□ -2.29
NUDCD3Q8IVD9 AC025030.2-201ENST00000552558 567 ntTSL 2 BASIC0.77□□□□□ -2.29
NUDCD3Q8IVD9 MIR6857-201ENST00000613267 93 ntBASIC0.77□□□□□ -2.29
NUDCD3Q8IVD9 PISRT1.1-201ENST00000616930 107 ntBASIC0.77□□□□□ -2.29
NUDCD3Q8IVD9 AC092794.2-201ENST00000620933 563 ntBASIC0.77□□□□□ -2.29
NUDCD3Q8IVD9 RNU6-833P-201ENST00000363486 107 ntBASIC0.76□□□□□ -2.29
NUDCD3Q8IVD9 RNU6-163P-201ENST00000384396 106 ntBASIC0.76□□□□□ -2.29
NUDCD3Q8IVD9 SNORA75.2-201ENST00000391138 150 ntBASIC0.76□□□□□ -2.29
NUDCD3Q8IVD9 SNORA75.3-201ENST00000391231 150 ntBASIC0.76□□□□□ -2.29
NUDCD3Q8IVD9 RNA5SP511-201ENST00000410487 115 ntBASIC0.76□□□□□ -2.29
NUDCD3Q8IVD9 AL354751.2-201ENST00000415471 210 ntBASIC0.76□□□□□ -2.29
NUDCD3Q8IVD9 PIGPP3-201ENST00000425307 415 ntBASIC0.76□□□□□ -2.29
NUDCD3Q8IVD9 AL353747.2-201ENST00000439207 205 ntTSL 3 BASIC0.76□□□□□ -2.29
NUDCD3Q8IVD9 ELOCP24-201ENST00000456370 334 ntBASIC0.76□□□□□ -2.29
NUDCD3Q8IVD9 RNU7-21P-201ENST00000459430 62 ntBASIC0.76□□□□□ -2.29
NUDCD3Q8IVD9 CYCTP-201ENST00000504253 315 ntBASIC0.76□□□□□ -2.29
NUDCD3Q8IVD9 RNU6-113P-201ENST00000516653 101 ntBASIC0.76□□□□□ -2.29
NUDCD3Q8IVD9 RNU6-197P-201ENST00000516680 100 ntBASIC0.76□□□□□ -2.29
NUDCD3Q8IVD9 MIR4653-201ENST00000585107 83 ntBASIC0.76□□□□□ -2.29
Retrieved 100 of 98,524 protein–RNA pairs in 166.5 ms