Protein–RNA interactions for Protein: Q6P499

NIPAL3, NIPA-like protein 3, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NIPAL3Q6P499 RNU6ATAC8P-201ENST00000408460 126 ntBASIC0.95□□□□□ -2.26
NIPAL3Q6P499 SNORD12B-201ENST00000410433 91 ntBASIC0.95□□□□□ -2.26
NIPAL3Q6P499 RNU5A-5P-201ENST00000411054 116 ntBASIC0.95□□□□□ -2.26
NIPAL3Q6P499 FCF1P9-201ENST00000412546 282 ntBASIC0.95□□□□□ -2.26
NIPAL3Q6P499 AC114482.1-201ENST00000418010 247 ntBASIC0.95□□□□□ -2.26
NIPAL3Q6P499 AC063976.4-201ENST00000421971 163 ntBASIC0.95□□□□□ -2.26
NIPAL3Q6P499 AC104332.1-201ENST00000440471 797 ntBASIC0.95□□□□□ -2.26
NIPAL3Q6P499 MIR2053-201ENST00000459295 91 ntBASIC0.95□□□□□ -2.26
NIPAL3Q6P499 AC069439.1-201ENST00000494739 167 ntBASIC0.95□□□□□ -2.26
NIPAL3Q6P499 AC116353.2-201ENST00000505332 712 ntBASIC0.95□□□□□ -2.26
NIPAL3Q6P499 RNU4ATAC11P-201ENST00000515939 126 ntBASIC0.95□□□□□ -2.26
NIPAL3Q6P499 RNU6-358P-201ENST00000516564 75 ntBASIC0.95□□□□□ -2.26
NIPAL3Q6P499 MIR2355-201ENST00000517199 87 ntBASIC0.95□□□□□ -2.26
NIPAL3Q6P499 AL358944.1-201ENST00000528537 144 ntBASIC0.95□□□□□ -2.26
NIPAL3Q6P499 AP003174.2-201ENST00000544663 294 ntTSL 3 BASIC0.95□□□□□ -2.26
NIPAL3Q6P499 AC005828.6-201ENST00000606610 232 ntBASIC0.95□□□□□ -2.26
NIPAL3Q6P499 MIR1244-1-201ENST00000612829 85 ntBASIC0.95□□□□□ -2.26
NIPAL3Q6P499 MIR1244-3-201ENST00000635744 85 ntBASIC0.95□□□□□ -2.26
NIPAL3Q6P499 MIR1244-2-201ENST00000636449 85 ntBASIC0.95□□□□□ -2.26
NIPAL3Q6P499 MIR1244-4-202ENST00000636813 85 ntBASIC0.95□□□□□ -2.26
NIPAL3Q6P499 RNU6-1301P-201ENST00000362724 104 ntBASIC0.94□□□□□ -2.26
NIPAL3Q6P499 RNU6-392P-201ENST00000364926 101 ntBASIC0.94□□□□□ -2.26
NIPAL3Q6P499 RNU6-117P-201ENST00000365415 107 ntBASIC0.94□□□□□ -2.26
NIPAL3Q6P499 SNORD12-201ENST00000391002 90 ntBASIC0.94□□□□□ -2.26
NIPAL3Q6P499 AL365434.1-201ENST00000412362 380 ntTSL 3 BASIC0.94□□□□□ -2.26
NIPAL3Q6P499 MRPL35P3-201ENST00000421557 364 ntBASIC0.94□□□□□ -2.26
NIPAL3Q6P499 ZEB1-AS1-204ENST00000450834 576 ntTSL 3 BASIC0.94□□□□□ -2.26
NIPAL3Q6P499 COX6CP14-201ENST00000469580 174 ntBASIC0.94□□□□□ -2.26
NIPAL3Q6P499 AC092892.1-201ENST00000496067 327 ntTSL 5 BASIC0.94□□□□□ -2.26
NIPAL3Q6P499 UBL5P1-201ENST00000507979 193 ntBASIC0.94□□□□□ -2.26
NIPAL3Q6P499 AL117336.2-201ENST00000602435 335 ntBASIC0.94□□□□□ -2.26
NIPAL3Q6P499 SNORD114-21-201ENST00000606412 72 ntBASIC0.94□□□□□ -2.26
NIPAL3Q6P499 AC103810.9-201ENST00000606688 112 ntBASIC0.94□□□□□ -2.26
NIPAL3Q6P499 AC027514.1-201ENST00000588561 1603 ntBASIC0.93□□□□□ -2.26
NIPAL3Q6P499 ZGRF1-202ENST00000309071 3347 ntTSL 1 (best) BASIC0.93□□□□□ -2.26
NIPAL3Q6P499 MIRLET7C-201ENST00000362160 84 ntBASIC0.93□□□□□ -2.26
NIPAL3Q6P499 SNORD114-7-201ENST00000362520 77 ntBASIC0.93□□□□□ -2.26
NIPAL3Q6P499 RNU4-41P-201ENST00000364426 143 ntBASIC0.93□□□□□ -2.26
NIPAL3Q6P499 SNORA22-201ENST00000383907 134 ntBASIC0.93□□□□□ -2.26
NIPAL3Q6P499 SNORA22C-201ENST00000384614 134 ntBASIC0.93□□□□□ -2.26
NIPAL3Q6P499 MIR19B1-201ENST00000384829 87 ntBASIC0.93□□□□□ -2.26
NIPAL3Q6P499 OPRPN-201ENST00000399575 1040 ntAPPRIS P1 TSL 1 (best) BASIC0.93□□□□□ -2.26
NIPAL3Q6P499 AC078851.1-201ENST00000415918 298 ntTSL 3 BASIC0.93□□□□□ -2.26
NIPAL3Q6P499 LINC01399-202ENST00000458450 244 ntBASIC0.93□□□□□ -2.26
NIPAL3Q6P499 RNU6-63P-201ENST00000516690 95 ntBASIC0.93□□□□□ -2.26
NIPAL3Q6P499 RNU7-30P-201ENST00000516835 62 ntBASIC0.93□□□□□ -2.26
NIPAL3Q6P499 AC136932.1-201ENST00000574771 208 ntBASIC0.93□□□□□ -2.26
NIPAL3Q6P499 AC090371.2-202ENST00000582239 644 ntTSL 5 BASIC0.93□□□□□ -2.26
NIPAL3Q6P499 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC0.92□□□□□ -2.26
NIPAL3Q6P499 AL391516.1-201ENST00000554380 2449 ntBASIC0.92□□□□□ -2.26
NIPAL3Q6P499 Y_RNA.243-201ENST00000364481 109 ntBASIC0.92□□□□□ -2.26
NIPAL3Q6P499 RNU6-99P-201ENST00000364721 107 ntBASIC0.92□□□□□ -2.26
NIPAL3Q6P499 MIR891A-201ENST00000401237 79 ntBASIC0.92□□□□□ -2.26
NIPAL3Q6P499 Z98949.2-201ENST00000440996 144 ntBASIC0.92□□□□□ -2.26
NIPAL3Q6P499 HMGN1P7-201ENST00000491722 313 ntBASIC0.92□□□□□ -2.26
NIPAL3Q6P499 SNORD79.1-201ENST00000516069 84 ntBASIC0.92□□□□□ -2.26
NIPAL3Q6P499 MIR4661-201ENST00000582720 75 ntBASIC0.92□□□□□ -2.26
NIPAL3Q6P499 AC084782.3-201ENST00000612282 578 ntBASIC0.92□□□□□ -2.26
NIPAL3Q6P499 ZFAT-AS1_2.1-201ENST00000613742 201 ntBASIC0.92□□□□□ -2.26
NIPAL3Q6P499 KCNQ1OT1_3.1-201ENST00000616504 116 ntBASIC0.92□□□□□ -2.26
NIPAL3Q6P499 RNU6-767P-201ENST00000384132 107 ntBASIC0.91□□□□□ -2.26
NIPAL3Q6P499 RNU6-163P-201ENST00000384396 106 ntBASIC0.91□□□□□ -2.26
NIPAL3Q6P499 SNORA80D-201ENST00000384488 135 ntBASIC0.91□□□□□ -2.26
NIPAL3Q6P499 AC002429.1-201ENST00000437672 148 ntBASIC0.91□□□□□ -2.26
NIPAL3Q6P499 AL590422.1-201ENST00000451829 364 ntTSL 3 BASIC0.91□□□□□ -2.26
NIPAL3Q6P499 ELOCP24-201ENST00000456370 334 ntBASIC0.91□□□□□ -2.26
NIPAL3Q6P499 ATP1B3-AS1-201ENST00000492725 376 ntTSL 5 BASIC0.91□□□□□ -2.26
NIPAL3Q6P499 RNU6-408P-201ENST00000515910 100 ntBASIC0.91□□□□□ -2.26
NIPAL3Q6P499 SNORA70.12-201ENST00000516084 153 ntBASIC0.91□□□□□ -2.26
NIPAL3Q6P499 FAM106DP-201ENST00000586416 501 ntBASIC0.91□□□□□ -2.26
NIPAL3Q6P499 ST7-OT4_1.1-201ENST00000615322 200 ntBASIC0.91□□□□□ -2.26
NIPAL3Q6P499 AL669831.3-213ENST00000636676 183 ntBASIC0.91□□□□□ -2.26
NIPAL3Q6P499 EYS-205ENST00000393380 5450 ntTSL 1 (best) BASIC0.91□□□□□ -2.26
NIPAL3Q6P499 KLRA1P-203ENST00000535939 2353 ntTSL 1 (best) BASIC0.91□□□□□ -2.26
NIPAL3Q6P499 RNY1P10-201ENST00000363268 113 ntBASIC0.9□□□□□ -2.27
NIPAL3Q6P499 RNU6-833P-201ENST00000363486 107 ntBASIC0.9□□□□□ -2.27
NIPAL3Q6P499 MIR625-201ENST00000385047 85 ntBASIC0.9□□□□□ -2.27
NIPAL3Q6P499 SNORA69.1-201ENST00000390904 137 ntBASIC0.9□□□□□ -2.27
NIPAL3Q6P499 Y_RNA.621-201ENST00000411065 96 ntBASIC0.9□□□□□ -2.27
NIPAL3Q6P499 AC092813.2-201ENST00000434540 399 ntTSL 3 BASIC0.9□□□□□ -2.27
NIPAL3Q6P499 LINC02238-202ENST00000436262 320 ntTSL 3 BASIC0.9□□□□□ -2.27
NIPAL3Q6P499 CYCTP-201ENST00000504253 315 ntBASIC0.9□□□□□ -2.27
NIPAL3Q6P499 LINC01337-201ENST00000515871 440 ntTSL 3 BASIC0.9□□□□□ -2.27
NIPAL3Q6P499 RNU6-264P-201ENST00000517134 104 ntBASIC0.9□□□□□ -2.27
NIPAL3Q6P499 RNU6-1116P-201ENST00000517269 99 ntBASIC0.9□□□□□ -2.27
NIPAL3Q6P499 NKAIN2-205ENST00000546092 148 ntTSL 5 BASIC0.9□□□□□ -2.27
NIPAL3Q6P499 AC068790.6-201ENST00000602558 258 ntBASIC0.9□□□□□ -2.27
NIPAL3Q6P499 SNORD68-201ENST00000363214 84 ntBASIC0.89□□□□□ -2.27
NIPAL3Q6P499 SNORD114-24-201ENST00000365029 72 ntBASIC0.89□□□□□ -2.27
NIPAL3Q6P499 Y_RNA.363-201ENST00000365529 113 ntBASIC0.89□□□□□ -2.27
NIPAL3Q6P499 RNU6-1105P-201ENST00000384774 107 ntBASIC0.89□□□□□ -2.27
NIPAL3Q6P499 AL354751.2-201ENST00000415471 210 ntBASIC0.89□□□□□ -2.27
NIPAL3Q6P499 MTND4P28-201ENST00000426217 387 ntBASIC0.89□□□□□ -2.27
NIPAL3Q6P499 AC122707.1-201ENST00000502882 219 ntTSL 2 BASIC0.89□□□□□ -2.27
NIPAL3Q6P499 AC111194.2-201ENST00000511222 455 ntTSL 5 BASIC0.89□□□□□ -2.27
NIPAL3Q6P499 SNORD111.1-201ENST00000516421 86 ntBASIC0.89□□□□□ -2.27
NIPAL3Q6P499 RNU6-1213P-201ENST00000517075 94 ntBASIC0.89□□□□□ -2.27
NIPAL3Q6P499 AC023442.1-201ENST00000531247 422 ntBASIC0.89□□□□□ -2.27
NIPAL3Q6P499 AC084882.1-201ENST00000561254 555 ntTSL 4 BASIC0.89□□□□□ -2.27
NIPAL3Q6P499 AC120024.3-201ENST00000603167 156 ntBASIC0.89□□□□□ -2.27
Retrieved 100 of 98,524 protein–RNA pairs in 115.3 ms