Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 SNORA6-201ENST00000384033 151 ntBASIC2.48□□□□□ -2.01
VPS53Q5VIR6 AC009310.1-201ENST00000414414 451 ntBASIC2.48□□□□□ -2.01
VPS53Q5VIR6 AC003988.1-201ENST00000447198 578 ntTSL 5 BASIC2.48□□□□□ -2.01
VPS53Q5VIR6 RPL23AP7-203ENST00000449021 469 ntBASIC2.48□□□□□ -2.01
VPS53Q5VIR6 AL021397.1-201ENST00000451806 248 ntBASIC2.48□□□□□ -2.01
VPS53Q5VIR6 AC093259.1-201ENST00000509755 300 ntBASIC2.48□□□□□ -2.01
VPS53Q5VIR6 Y_RNA.679-201ENST00000516416 91 ntBASIC2.48□□□□□ -2.01
VPS53Q5VIR6 MIR4648-201ENST00000580107 72 ntBASIC2.48□□□□□ -2.01
VPS53Q5VIR6 MIR5694-201ENST00000581190 76 ntBASIC2.48□□□□□ -2.01
VPS53Q5VIR6 SNRPGP19-201ENST00000603826 189 ntBASIC2.48□□□□□ -2.01
VPS53Q5VIR6 AC135050.6-201ENST00000610813 528 ntTSL 3 BASIC2.48□□□□□ -2.01
VPS53Q5VIR6 Y_RNA.783-201ENST00000613546 102 ntBASIC2.48□□□□□ -2.01
VPS53Q5VIR6 SI-201ENST00000264382 6011 ntAPPRIS P1 TSL 1 (best) BASIC2.47□□□□□ -2.01
VPS53Q5VIR6 Y_RNA.83-201ENST00000363005 113 ntBASIC2.47□□□□□ -2.01
VPS53Q5VIR6 Y_RNA.117-201ENST00000363294 101 ntBASIC2.47□□□□□ -2.01
VPS53Q5VIR6 Y_RNA.199-201ENST00000364014 102 ntBASIC2.47□□□□□ -2.01
VPS53Q5VIR6 Y_RNA.274-201ENST00000364714 101 ntBASIC2.47□□□□□ -2.01
VPS53Q5VIR6 RNA5SP160-201ENST00000364866 120 ntBASIC2.47□□□□□ -2.01
VPS53Q5VIR6 Y_RNA.292-201ENST00000364904 97 ntBASIC2.47□□□□□ -2.01
VPS53Q5VIR6 RNU6-662P-201ENST00000384253 104 ntBASIC2.47□□□□□ -2.01
VPS53Q5VIR6 AL357134.1-201ENST00000445848 426 ntBASIC2.47□□□□□ -2.01
VPS53Q5VIR6 RNU6-717P-201ENST00000459076 104 ntBASIC2.47□□□□□ -2.01
VPS53Q5VIR6 Y_RNA.638-201ENST00000459374 113 ntBASIC2.47□□□□□ -2.01
VPS53Q5VIR6 RNU2-19P-201ENST00000517288 84 ntBASIC2.47□□□□□ -2.01
VPS53Q5VIR6 AC009107.1-201ENST00000561923 330 ntTSL 3 BASIC2.47□□□□□ -2.01
VPS53Q5VIR6 AC011921.3-201ENST00000605540 361 ntBASIC2.47□□□□□ -2.01
VPS53Q5VIR6 MALAT1-207ENST00000613376 132 ntTSL 3 BASIC2.47□□□□□ -2.01
VPS53Q5VIR6 AL078604.3-201ENST00000615580 211 ntBASIC2.47□□□□□ -2.01
VPS53Q5VIR6 AC073349.3-201ENST00000617616 186 ntBASIC2.47□□□□□ -2.01
VPS53Q5VIR6 PYGO1-201ENST00000302000 8488 ntTSL 1 (best) BASIC2.47□□□□□ -2.01
VPS53Q5VIR6 RNU6-1272P-201ENST00000362776 107 ntBASIC2.46□□□□□ -2.02
VPS53Q5VIR6 RNU6-743P-201ENST00000364151 106 ntBASIC2.46□□□□□ -2.02
VPS53Q5VIR6 Y_RNA.297-201ENST00000364950 91 ntBASIC2.46□□□□□ -2.02
VPS53Q5VIR6 RN7SKP284-201ENST00000411002 343 ntBASIC2.46□□□□□ -2.02
VPS53Q5VIR6 RNU6-651P-201ENST00000411040 105 ntBASIC2.46□□□□□ -2.02
VPS53Q5VIR6 RN7SKP192-201ENST00000411291 327 ntBASIC2.46□□□□□ -2.02
VPS53Q5VIR6 RNU6-57P-201ENST00000411348 103 ntBASIC2.46□□□□□ -2.02
VPS53Q5VIR6 AC123900.1-201ENST00000420390 96 ntBASIC2.46□□□□□ -2.02
VPS53Q5VIR6 AC008134.1-201ENST00000420943 193 ntBASIC2.46□□□□□ -2.02
VPS53Q5VIR6 AC108488.2-201ENST00000438485 421 ntAPPRIS P1 TSL 3 BASIC2.46□□□□□ -2.02
VPS53Q5VIR6 MTCO1P44-201ENST00000441935 243 ntBASIC2.46□□□□□ -2.02
VPS53Q5VIR6 AC016717.1-201ENST00000448918 286 ntBASIC2.46□□□□□ -2.02
VPS53Q5VIR6 AL121580.1-201ENST00000449941 219 ntTSL 3 BASIC2.46□□□□□ -2.02
VPS53Q5VIR6 AL138752.1-201ENST00000452964 351 ntBASIC2.46□□□□□ -2.02
VPS53Q5VIR6 AC055731.1-201ENST00000474387 401 ntBASIC2.46□□□□□ -2.02
VPS53Q5VIR6 SNORD116-28-201ENST00000516123 91 ntBASIC2.46□□□□□ -2.02
VPS53Q5VIR6 SNORA81.3-201ENST00000517283 198 ntBASIC2.46□□□□□ -2.02
VPS53Q5VIR6 ZNRD1-AS1_3.8-201ENST00000611686 104 ntBASIC2.46□□□□□ -2.02
VPS53Q5VIR6 USP53-202ENST00000450251 6072 ntAPPRIS P1 TSL 5 BASIC2.46□□□□□ -2.02
VPS53Q5VIR6 SCN7A-206ENST00000619410 7186 ntAPPRIS P1 TSL 5 BASIC2.45□□□□□ -2.02
VPS53Q5VIR6 SCN7A-207ENST00000621965 7186 ntAPPRIS P1 TSL 5 BASIC2.45□□□□□ -2.02
VPS53Q5VIR6 SERPINI2-207ENST00000476257 1837 ntAPPRIS P1 TSL 5 BASIC2.45□□□□□ -2.02
VPS53Q5VIR6 Y_RNA.29-201ENST00000362570 113 ntBASIC2.45□□□□□ -2.02
VPS53Q5VIR6 RNU6-418P-201ENST00000384035 107 ntBASIC2.45□□□□□ -2.02
VPS53Q5VIR6 SNORD14D-201ENST00000384390 87 ntBASIC2.45□□□□□ -2.02
VPS53Q5VIR6 MIR518A2-201ENST00000384966 87 ntBASIC2.45□□□□□ -2.02
VPS53Q5VIR6 MIR873-201ENST00000401120 77 ntBASIC2.45□□□□□ -2.02
VPS53Q5VIR6 AL355497.1-201ENST00000406262 551 ntBASIC2.45□□□□□ -2.02
VPS53Q5VIR6 RNU6ATAC19P-201ENST00000408096 110 ntBASIC2.45□□□□□ -2.02
VPS53Q5VIR6 AL445646.1-201ENST00000431784 216 ntBASIC2.45□□□□□ -2.02
VPS53Q5VIR6 AC010531.2-201ENST00000465012 153 ntBASIC2.45□□□□□ -2.02
VPS53Q5VIR6 AC010598.1-201ENST00000510378 103 ntBASIC2.45□□□□□ -2.02
VPS53Q5VIR6 RNU6-182P-201ENST00000516970 105 ntBASIC2.45□□□□□ -2.02
VPS53Q5VIR6 AC025647.1-201ENST00000517879 253 ntBASIC2.45□□□□□ -2.02
VPS53Q5VIR6 AC136628.3-201ENST00000521868 290 ntBASIC2.45□□□□□ -2.02
VPS53Q5VIR6 AC012435.2-201ENST00000562869 361 ntTSL 3 BASIC2.45□□□□□ -2.02
VPS53Q5VIR6 MIR4298-201ENST00000584380 73 ntBASIC2.45□□□□□ -2.02
VPS53Q5VIR6 AL357054.2-201ENST00000607644 423 ntTSL 5 BASIC2.45□□□□□ -2.02
VPS53Q5VIR6 U91328.3-201ENST00000608931 354 ntTSL 3 BASIC2.45□□□□□ -2.02
VPS53Q5VIR6 AC098479.1-201ENST00000609225 154 ntBASIC2.45□□□□□ -2.02
VPS53Q5VIR6 MIR219B-201ENST00000637023 88 ntBASIC2.45□□□□□ -2.02
VPS53Q5VIR6 ATP13A3-201ENST00000256031 7322 ntAPPRIS P1 TSL 5 BASIC2.45□□□□□ -2.02
VPS53Q5VIR6 MIR411-201ENST00000362239 96 ntBASIC2.44□□□□□ -2.02
VPS53Q5VIR6 RNU6-271P-201ENST00000363858 105 ntBASIC2.44□□□□□ -2.02
VPS53Q5VIR6 Y_RNA.368-201ENST00000365547 113 ntBASIC2.44□□□□□ -2.02
VPS53Q5VIR6 SNORA20B-201ENST00000384220 132 ntBASIC2.44□□□□□ -2.02
VPS53Q5VIR6 AL355796.1-201ENST00000406706 323 ntBASIC2.44□□□□□ -2.02
VPS53Q5VIR6 RNA5SP338-201ENST00000410495 85 ntBASIC2.44□□□□□ -2.02
VPS53Q5VIR6 Y_RNA.626-201ENST00000411288 95 ntBASIC2.44□□□□□ -2.02
VPS53Q5VIR6 SNORD65B-201ENST00000459126 73 ntBASIC2.44□□□□□ -2.02
VPS53Q5VIR6 CPHL1P-203ENST00000471823 523 ntTSL 5 BASIC2.44□□□□□ -2.02
VPS53Q5VIR6 RNU1-40P-201ENST00000516816 164 ntBASIC2.44□□□□□ -2.02
VPS53Q5VIR6 RNU1-97P-201ENST00000516872 164 ntBASIC2.44□□□□□ -2.02
VPS53Q5VIR6 Z83818.1-201ENST00000603584 150 ntBASIC2.44□□□□□ -2.02
VPS53Q5VIR6 AC006435.5-201ENST00000624486 112 ntBASIC2.44□□□□□ -2.02
VPS53Q5VIR6 snoU18.1-201ENST00000629629 71 ntBASIC2.44□□□□□ -2.02
VPS53Q5VIR6 LRRIQ3-204ENST00000395089 2673 ntAPPRIS P2 TSL 5 BASIC2.44□□□□□ -2.02
VPS53Q5VIR6 KTN1-214ENST00000554507 2057 ntTSL 1 (best) BASIC2.43□□□□□ -2.02
VPS53Q5VIR6 Y_RNA.456-201ENST00000384232 111 ntBASIC2.43□□□□□ -2.02
VPS53Q5VIR6 MIR1261-201ENST00000408659 82 ntBASIC2.43□□□□□ -2.02
VPS53Q5VIR6 MTND5P15-201ENST00000434246 349 ntBASIC2.43□□□□□ -2.02
VPS53Q5VIR6 AL121890.1-201ENST00000435457 205 ntBASIC2.43□□□□□ -2.02
VPS53Q5VIR6 HSPE1P13-201ENST00000451143 297 ntBASIC2.43□□□□□ -2.02
VPS53Q5VIR6 RNU6-991P-201ENST00000516168 107 ntBASIC2.43□□□□□ -2.02
VPS53Q5VIR6 AP005660.1-201ENST00000522972 293 ntBASIC2.43□□□□□ -2.02
VPS53Q5VIR6 CBX3P4-201ENST00000538909 354 ntBASIC2.43□□□□□ -2.02
VPS53Q5VIR6 LINC01919-202ENST00000579506 384 ntTSL 3 BASIC2.43□□□□□ -2.02
VPS53Q5VIR6 MIR5089-201ENST00000580047 84 ntBASIC2.43□□□□□ -2.02
VPS53Q5VIR6 AC025754.2-201ENST00000606491 432 ntBASIC2.43□□□□□ -2.02
VPS53Q5VIR6 KIF20B-202ENST00000371728 6419 ntAPPRIS ALT2 TSL 1 (best) BASIC2.43□□□□□ -2.02
Retrieved 100 of 98,524 protein–RNA pairs in 109.1 ms