Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 RNA5SP475-201ENST00000410568 110 ntBASIC1.03□□□□□ -2.24
CCDC40Q4G0X9 AC008243.1-201ENST00000504955 389 ntTSL 3 BASIC1.03□□□□□ -2.24
CCDC40Q4G0X9 SCARNA16.2-201ENST00000516520 172 ntBASIC1.03□□□□□ -2.24
CCDC40Q4G0X9 AC136932.1-201ENST00000574771 208 ntBASIC1.03□□□□□ -2.24
CCDC40Q4G0X9 PNRC2-204ENST00000579103 171 ntTSL 2 BASIC1.03□□□□□ -2.24
CCDC40Q4G0X9 AC060780.3-201ENST00000589464 80 ntBASIC1.03□□□□□ -2.24
CCDC40Q4G0X9 5S_rRNA.13-201ENST00000622298 123 ntBASIC1.03□□□□□ -2.24
CCDC40Q4G0X9 SENP7-201ENST00000314261 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC1.02□□□□□ -2.25
CCDC40Q4G0X9 Y_RNA.363-201ENST00000365529 113 ntBASIC1.02□□□□□ -2.25
CCDC40Q4G0X9 AC009480.1-201ENST00000402410 412 ntTSL 3 BASIC1.02□□□□□ -2.25
CCDC40Q4G0X9 LRRD1-203ENST00000430130 2661 ntAPPRIS P1 TSL 5 BASIC1.02□□□□□ -2.25
CCDC40Q4G0X9 AC104332.1-201ENST00000440471 797 ntBASIC1.02□□□□□ -2.25
CCDC40Q4G0X9 ZEB1-AS1-204ENST00000450834 576 ntTSL 3 BASIC1.02□□□□□ -2.25
CCDC40Q4G0X9 AC233266.1-201ENST00000454518 96 ntBASIC1.02□□□□□ -2.25
CCDC40Q4G0X9 RPL39P28-201ENST00000465655 155 ntBASIC1.02□□□□□ -2.25
CCDC40Q4G0X9 AL049830.1-201ENST00000468034 425 ntBASIC1.02□□□□□ -2.25
CCDC40Q4G0X9 AC111194.2-201ENST00000511222 455 ntTSL 5 BASIC1.02□□□□□ -2.25
CCDC40Q4G0X9 LINC02061-201ENST00000514225 335 ntTSL 3 BASIC1.02□□□□□ -2.25
CCDC40Q4G0X9 RNU6-358P-201ENST00000516564 75 ntBASIC1.02□□□□□ -2.25
CCDC40Q4G0X9 AC025580.2-205ENST00000559960 552 ntTSL 4 BASIC1.02□□□□□ -2.25
CCDC40Q4G0X9 AC005899.2-201ENST00000584353 90 ntBASIC1.02□□□□□ -2.25
CCDC40Q4G0X9 AC011712.1-201ENST00000588959 234 ntBASIC1.02□□□□□ -2.25
CCDC40Q4G0X9 AC242852.1-201ENST00000612151 96 ntBASIC1.02□□□□□ -2.25
CCDC40Q4G0X9 MIR1244-1-201ENST00000612829 85 ntBASIC1.02□□□□□ -2.25
CCDC40Q4G0X9 ZFAT-AS1_2.1-201ENST00000613742 201 ntBASIC1.02□□□□□ -2.25
CCDC40Q4G0X9 PISRT1.1-201ENST00000616930 107 ntBASIC1.02□□□□□ -2.25
CCDC40Q4G0X9 AC092794.2-201ENST00000620933 563 ntBASIC1.02□□□□□ -2.25
CCDC40Q4G0X9 AC244015.1-201ENST00000622301 99 ntBASIC1.02□□□□□ -2.25
CCDC40Q4G0X9 MIR1244-3-201ENST00000635744 85 ntBASIC1.02□□□□□ -2.25
CCDC40Q4G0X9 MIR1244-2-201ENST00000636449 85 ntBASIC1.02□□□□□ -2.25
CCDC40Q4G0X9 MIR1244-4-202ENST00000636813 85 ntBASIC1.02□□□□□ -2.25
CCDC40Q4G0X9 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC1.01□□□□□ -2.25
CCDC40Q4G0X9 Y_RNA.243-201ENST00000364481 109 ntBASIC1.01□□□□□ -2.25
CCDC40Q4G0X9 RNU6-136P-201ENST00000384663 107 ntBASIC1.01□□□□□ -2.25
CCDC40Q4G0X9 MIR520G-201ENST00000385064 90 ntBASIC1.01□□□□□ -2.25
CCDC40Q4G0X9 AL365434.1-201ENST00000412362 380 ntTSL 3 BASIC1.01□□□□□ -2.25
CCDC40Q4G0X9 Z98949.2-201ENST00000440996 144 ntBASIC1.01□□□□□ -2.25
CCDC40Q4G0X9 SUMO1P2-201ENST00000452524 304 ntBASIC1.01□□□□□ -2.25
CCDC40Q4G0X9 RPL17P19-201ENST00000489069 552 ntBASIC1.01□□□□□ -2.25
CCDC40Q4G0X9 AC116353.2-201ENST00000505332 712 ntBASIC1.01□□□□□ -2.25
CCDC40Q4G0X9 SNORD79.1-201ENST00000516069 84 ntBASIC1.01□□□□□ -2.25
CCDC40Q4G0X9 RNU6-63P-201ENST00000516690 95 ntBASIC1.01□□□□□ -2.25
CCDC40Q4G0X9 RNU6-1096P-201ENST00000517089 102 ntBASIC1.01□□□□□ -2.25
CCDC40Q4G0X9 AL357312.1-201ENST00000603879 298 ntBASIC1.01□□□□□ -2.25
CCDC40Q4G0X9 AC084782.3-201ENST00000612282 578 ntBASIC1.01□□□□□ -2.25
CCDC40Q4G0X9 RNU6-1301P-201ENST00000362724 104 ntBASIC1□□□□□ -2.25
CCDC40Q4G0X9 Y_RNA.72-201ENST00000362894 103 ntBASIC1□□□□□ -2.25
CCDC40Q4G0X9 RNU4-41P-201ENST00000364426 143 ntBASIC1□□□□□ -2.25
CCDC40Q4G0X9 SNORD12-201ENST00000391002 90 ntBASIC1□□□□□ -2.25
CCDC40Q4G0X9 SNORA75.4-201ENST00000391278 119 ntBASIC1□□□□□ -2.25
CCDC40Q4G0X9 SNORD12B-201ENST00000410433 91 ntBASIC1□□□□□ -2.25
CCDC40Q4G0X9 AC063976.4-201ENST00000421971 163 ntBASIC1□□□□□ -2.25
CCDC40Q4G0X9 RPL23AP50-201ENST00000434149 455 ntBASIC1□□□□□ -2.25
CCDC40Q4G0X9 AC002429.1-201ENST00000437672 148 ntBASIC1□□□□□ -2.25
CCDC40Q4G0X9 AL590422.1-201ENST00000451829 364 ntTSL 3 BASIC1□□□□□ -2.25
CCDC40Q4G0X9 RNU6-1116P-201ENST00000517269 99 ntBASIC1□□□□□ -2.25
CCDC40Q4G0X9 AL358944.1-201ENST00000528537 144 ntBASIC1□□□□□ -2.25
CCDC40Q4G0X9 AC084882.1-201ENST00000561254 555 ntTSL 4 BASIC1□□□□□ -2.25
CCDC40Q4G0X9 MIR4661-201ENST00000582720 75 ntBASIC1□□□□□ -2.25
CCDC40Q4G0X9 LINC02238-202ENST00000436262 320 ntTSL 3 BASIC0.99□□□□□ -2.25
CCDC40Q4G0X9 RPL39P39-201ENST00000455840 151 ntBASIC0.99□□□□□ -2.25
CCDC40Q4G0X9 ATP1B3-AS1-201ENST00000492725 376 ntTSL 5 BASIC0.99□□□□□ -2.25
CCDC40Q4G0X9 RNU6-307P-201ENST00000516743 106 ntBASIC0.99□□□□□ -2.25
CCDC40Q4G0X9 RNU7-30P-201ENST00000516835 62 ntBASIC0.99□□□□□ -2.25
CCDC40Q4G0X9 AL020996.3-201ENST00000606617 222 ntBASIC0.99□□□□□ -2.25
CCDC40Q4G0X9 Z84484.1-202ENST00000612718 60 ntTSL 5 BASIC0.99□□□□□ -2.25
CCDC40Q4G0X9 ZNF415-224ENST00000601493 2132 ntTSL 1 (best) BASIC0.98□□□□□ -2.25
CCDC40Q4G0X9 SNORD114-7-201ENST00000362520 77 ntBASIC0.98□□□□□ -2.25
CCDC40Q4G0X9 RNU6-99P-201ENST00000364721 107 ntBASIC0.98□□□□□ -2.25
CCDC40Q4G0X9 MIR526A1-201ENST00000384897 85 ntBASIC0.98□□□□□ -2.25
CCDC40Q4G0X9 AC114482.1-201ENST00000418010 247 ntBASIC0.98□□□□□ -2.25
CCDC40Q4G0X9 LINC01691-201ENST00000450546 426 ntTSL 5 BASIC0.98□□□□□ -2.25
CCDC40Q4G0X9 MIR2053-201ENST00000459295 91 ntBASIC0.98□□□□□ -2.25
CCDC40Q4G0X9 RNA5SP102-201ENST00000516865 106 ntBASIC0.98□□□□□ -2.25
CCDC40Q4G0X9 RNU6-1213P-201ENST00000517075 94 ntBASIC0.98□□□□□ -2.25
CCDC40Q4G0X9 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC0.97□□□□□ -2.25
CCDC40Q4G0X9 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC0.97□□□□□ -2.25
CCDC40Q4G0X9 Y_RNA.361-201ENST00000365515 120 ntBASIC0.97□□□□□ -2.25
CCDC40Q4G0X9 RNU6-1310P-201ENST00000384153 107 ntBASIC0.97□□□□□ -2.25
CCDC40Q4G0X9 RNU6ATAC3P-201ENST00000387974 126 ntBASIC0.97□□□□□ -2.25
CCDC40Q4G0X9 FCF1P9-201ENST00000412546 282 ntBASIC0.97□□□□□ -2.25
CCDC40Q4G0X9 AC078851.1-201ENST00000415918 298 ntTSL 3 BASIC0.97□□□□□ -2.25
CCDC40Q4G0X9 SNORD124-201ENST00000459577 104 ntBASIC0.97□□□□□ -2.25
CCDC40Q4G0X9 RPS26P48-201ENST00000491713 339 ntBASIC0.97□□□□□ -2.25
CCDC40Q4G0X9 RNU6-408P-201ENST00000515910 100 ntBASIC0.97□□□□□ -2.25
CCDC40Q4G0X9 MIR2355-201ENST00000517199 87 ntBASIC0.97□□□□□ -2.25
CCDC40Q4G0X9 KCNQ1OT1_3.1-201ENST00000616504 116 ntBASIC0.97□□□□□ -2.25
CCDC40Q4G0X9 MIR8070-201ENST00000616510 88 ntBASIC0.97□□□□□ -2.25
CCDC40Q4G0X9 KLRA1P-203ENST00000535939 2353 ntTSL 1 (best) BASIC0.96□□□□□ -2.26
CCDC40Q4G0X9 RNU6-833P-201ENST00000363486 107 ntBASIC0.96□□□□□ -2.26
CCDC40Q4G0X9 SNORA80D-201ENST00000384488 135 ntBASIC0.96□□□□□ -2.26
CCDC40Q4G0X9 OPRPN-201ENST00000399575 1040 ntAPPRIS P1 TSL 1 (best) BASIC0.96□□□□□ -2.26
CCDC40Q4G0X9 MIR891A-201ENST00000401237 79 ntBASIC0.96□□□□□ -2.26
CCDC40Q4G0X9 RNA5SP511-201ENST00000410487 115 ntBASIC0.96□□□□□ -2.26
CCDC40Q4G0X9 MTND1P4-201ENST00000435196 415 ntBASIC0.96□□□□□ -2.26
CCDC40Q4G0X9 LINC01399-202ENST00000458450 244 ntBASIC0.96□□□□□ -2.26
CCDC40Q4G0X9 AC023442.1-201ENST00000531247 422 ntBASIC0.96□□□□□ -2.26
CCDC40Q4G0X9 AC090371.2-202ENST00000582239 644 ntTSL 5 BASIC0.96□□□□□ -2.26
CCDC40Q4G0X9 FAM106DP-201ENST00000586416 501 ntBASIC0.96□□□□□ -2.26
CCDC40Q4G0X9 AC004467.1-201ENST00000615678 330 ntBASIC0.96□□□□□ -2.26
Retrieved 100 of 98,524 protein–RNA pairs in 102.1 ms