Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 AC138625.1-201ENST00000567556 483 ntTSL 3 BASIC0.42□□□□□ -2.34
COL18A1P39060 AC004832.4-201ENST00000608952 331 ntBASIC0.42□□□□□ -2.34
COL18A1P39060 DISC2.1-201ENST00000612827 205 ntBASIC0.42□□□□□ -2.34
COL18A1P39060 Y_RNA.77-201ENST00000362962 107 ntBASIC0.42□□□□□ -2.34
COL18A1P39060 RNU6-281P-201ENST00000384212 103 ntBASIC0.42□□□□□ -2.34
COL18A1P39060 SNORD116-8-201ENST00000384365 95 ntBASIC0.42□□□□□ -2.34
COL18A1P39060 Z98949.2-201ENST00000440996 144 ntBASIC0.42□□□□□ -2.34
COL18A1P39060 AC245047.8-201ENST00000456455 284 ntBASIC0.42□□□□□ -2.34
COL18A1P39060 RPL30P10-201ENST00000488148 337 ntBASIC0.42□□□□□ -2.34
COL18A1P39060 AC096736.2-201ENST00000507972 175 ntTSL 3 BASIC0.42□□□□□ -2.34
COL18A1P39060 RNU6-1278P-201ENST00000516130 107 ntBASIC0.42□□□□□ -2.34
COL18A1P39060 RNU6-835P-201ENST00000516974 104 ntBASIC0.42□□□□□ -2.34
COL18A1P39060 Y_RNA.717-201ENST00000517106 92 ntBASIC0.42□□□□□ -2.34
COL18A1P39060 AC100801.1-202ENST00000518266 371 ntTSL 3 BASIC0.42□□□□□ -2.34
COL18A1P39060 AL356133.2-201ENST00000521572 371 ntTSL 3 BASIC0.42□□□□□ -2.34
COL18A1P39060 AC134698.4-201ENST00000523451 826 ntBASIC0.42□□□□□ -2.34
COL18A1P39060 AL358944.1-201ENST00000528537 144 ntBASIC0.42□□□□□ -2.34
COL18A1P39060 AC124303.1-201ENST00000605703 360 ntBASIC0.42□□□□□ -2.34
COL18A1P39060 SATB1-AS1-227ENST00000625533 743 ntTSL 5 BASIC0.42□□□□□ -2.34
COL18A1P39060 AC068137.3-201ENST00000639191 341 ntBASIC0.42□□□□□ -2.34
COL18A1P39060 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC0.41□□□□□ -2.34
COL18A1P39060 SNORA20B-201ENST00000384220 132 ntBASIC0.41□□□□□ -2.34
COL18A1P39060 AC091021.1-201ENST00000468051 388 ntBASIC0.41□□□□□ -2.34
COL18A1P39060 COX6CP6-201ENST00000490840 228 ntBASIC0.41□□□□□ -2.34
COL18A1P39060 Y_RNA.683-201ENST00000516508 93 ntBASIC0.41□□□□□ -2.34
COL18A1P39060 AC091144.1-201ENST00000519573 138 ntBASIC0.41□□□□□ -2.34
COL18A1P39060 AC024382.1-201ENST00000520224 292 ntTSL 3 BASIC0.41□□□□□ -2.34
COL18A1P39060 AL162413.1-201ENST00000603198 110 ntBASIC0.41□□□□□ -2.34
COL18A1P39060 AL353765.1-201ENST00000605514 183 ntBASIC0.41□□□□□ -2.34
COL18A1P39060 AC063944.3-201ENST00000609969 533 ntBASIC0.41□□□□□ -2.34
COL18A1P39060 AC027279.3-201ENST00000625055 122 ntBASIC0.41□□□□□ -2.34
COL18A1P39060 AC005592.1-201ENST00000566527 1640 ntBASIC0.41□□□□□ -2.34
COL18A1P39060 DEUP1-202ENST00000525646 1920 ntTSL 1 (best) BASIC0.4□□□□□ -2.34
COL18A1P39060 RNU6-522P-201ENST00000364497 107 ntBASIC0.4□□□□□ -2.35
COL18A1P39060 RNU6-163P-201ENST00000384396 106 ntBASIC0.4□□□□□ -2.35
COL18A1P39060 RNU6-376P-201ENST00000384731 106 ntBASIC0.4□□□□□ -2.35
COL18A1P39060 RNU6-1068P-201ENST00000410958 103 ntBASIC0.4□□□□□ -2.35
COL18A1P39060 RPS26P5-201ENST00000418544 335 ntBASIC0.4□□□□□ -2.35
COL18A1P39060 SEPT14P3-201ENST00000439401 183 ntBASIC0.4□□□□□ -2.35
COL18A1P39060 AC104332.1-201ENST00000440471 797 ntBASIC0.4□□□□□ -2.35
COL18A1P39060 AL732372.2-207ENST00000445840 183 ntBASIC0.4□□□□□ -2.35
COL18A1P39060 SEPT14P2-201ENST00000453405 183 ntBASIC0.4□□□□□ -2.35
COL18A1P39060 SEPT14P4-201ENST00000513445 186 ntBASIC0.4□□□□□ -2.35
COL18A1P39060 FO082796.1-201ENST00000523795 183 ntBASIC0.4□□□□□ -2.35
COL18A1P39060 AL512360.1-201ENST00000555346 234 ntBASIC0.4□□□□□ -2.35
COL18A1P39060 AC093913.1-201ENST00000614178 329 ntBASIC0.4□□□□□ -2.35
COL18A1P39060 uc_338.22-201ENST00000622722 187 ntBASIC0.4□□□□□ -2.35
COL18A1P39060 AC090582.1-201ENST00000636321 199 ntBASIC0.4□□□□□ -2.35
COL18A1P39060 MIRLET7C-201ENST00000362160 84 ntBASIC0.4□□□□□ -2.35
COL18A1P39060 SNORA1B-201ENST00000362535 133 ntBASIC0.4□□□□□ -2.35
COL18A1P39060 SNORD114-15-201ENST00000364687 72 ntBASIC0.4□□□□□ -2.35
COL18A1P39060 RNU6-596P-201ENST00000365395 98 ntBASIC0.4□□□□□ -2.35
COL18A1P39060 Y_RNA.490-201ENST00000384413 102 ntBASIC0.4□□□□□ -2.35
COL18A1P39060 MTCO3P40-201ENST00000392516 676 ntBASIC0.4□□□□□ -2.35
COL18A1P39060 LINC01412-201ENST00000413525 362 ntTSL 2 BASIC0.4□□□□□ -2.35
COL18A1P39060 AL158828.1-201ENST00000438582 197 ntTSL 5 BASIC0.4□□□□□ -2.35
COL18A1P39060 AC010424.1-201ENST00000506336 297 ntBASIC0.4□□□□□ -2.35
COL18A1P39060 AC046134.1-201ENST00000514454 666 ntBASIC0.4□□□□□ -2.35
COL18A1P39060 SNORA70.12-201ENST00000516084 153 ntBASIC0.4□□□□□ -2.35
COL18A1P39060 RNU4-77P-201ENST00000516692 156 ntBASIC0.4□□□□□ -2.35
COL18A1P39060 AC018659.1-201ENST00000551083 169 ntBASIC0.4□□□□□ -2.35
COL18A1P39060 NBR2-204ENST00000587322 63 ntBASIC0.4□□□□□ -2.35
COL18A1P39060 AL117336.2-201ENST00000602435 335 ntBASIC0.4□□□□□ -2.35
COL18A1P39060 Z83818.1-201ENST00000603584 150 ntBASIC0.4□□□□□ -2.35
COL18A1P39060 AL391903.3-201ENST00000612158 163 ntBASIC0.4□□□□□ -2.35
COL18A1P39060 AL138726.1-201ENST00000614873 333 ntBASIC0.4□□□□□ -2.35
COL18A1P39060 RNU6-407P-201ENST00000365280 104 ntBASIC0.39□□□□□ -2.35
COL18A1P39060 RNU6-259P-201ENST00000383999 107 ntBASIC0.39□□□□□ -2.35
COL18A1P39060 Y_RNA.530-201ENST00000384587 101 ntBASIC0.39□□□□□ -2.35
COL18A1P39060 RNU6-95P-201ENST00000384697 107 ntBASIC0.39□□□□□ -2.35
COL18A1P39060 MIR520G-201ENST00000385064 90 ntBASIC0.39□□□□□ -2.35
COL18A1P39060 RNA5SP475-201ENST00000410568 110 ntBASIC0.39□□□□□ -2.35
COL18A1P39060 AC074133.1-201ENST00000515696 183 ntBASIC0.39□□□□□ -2.35
COL18A1P39060 Y_RNA.693-201ENST00000516641 110 ntBASIC0.39□□□□□ -2.35
COL18A1P39060 AC022868.1-201ENST00000517767 391 ntBASIC0.39□□□□□ -2.35
COL18A1P39060 OSBPL9P5-201ENST00000542581 171 ntBASIC0.39□□□□□ -2.35
COL18A1P39060 MIR3672-201ENST00000584290 82 ntBASIC0.39□□□□□ -2.35
COL18A1P39060 DLEU2_5.1-201ENST00000615567 84 ntBASIC0.39□□□□□ -2.35
COL18A1P39060 SEPT14P17-201ENST00000617978 177 ntBASIC0.39□□□□□ -2.35
COL18A1P39060 MTND5P26-201ENST00000426018 1752 ntBASIC0.38□□□□□ -2.35
COL18A1P39060 RNA5SP264-201ENST00000363115 107 ntBASIC0.38□□□□□ -2.35
COL18A1P39060 RNA5SP368-201ENST00000364298 116 ntBASIC0.38□□□□□ -2.35
COL18A1P39060 Y_RNA.330-201ENST00000365230 109 ntBASIC0.38□□□□□ -2.35
COL18A1P39060 MIR605-201ENST00000385078 83 ntBASIC0.38□□□□□ -2.35
COL18A1P39060 SNORA75.2-201ENST00000391138 150 ntBASIC0.38□□□□□ -2.35
COL18A1P39060 SNORA75.3-201ENST00000391231 150 ntBASIC0.38□□□□□ -2.35
COL18A1P39060 DEFB108C-201ENST00000400154 252 ntBASIC0.38□□□□□ -2.35
COL18A1P39060 AL162411.1-201ENST00000413145 526 ntTSL 2 BASIC0.38□□□□□ -2.35
COL18A1P39060 AC079467.1-201ENST00000508512 503 ntTSL 3 BASIC0.38□□□□□ -2.35
COL18A1P39060 RNU6-758P-201ENST00000516292 89 ntBASIC0.38□□□□□ -2.35
COL18A1P39060 AC010525.2-201ENST00000590920 195 ntBASIC0.38□□□□□ -2.35
COL18A1P39060 RN7SKP299-201ENST00000606679 301 ntBASIC0.38□□□□□ -2.35
COL18A1P39060 AC127459.3-201ENST00000624328 466 ntBASIC0.38□□□□□ -2.35
COL18A1P39060 NCBP1-205ENST00000629069 249 ntTSL 5 BASIC0.38□□□□□ -2.35
COL18A1P39060 hsa-mir-548d-1.1-201ENST00000636914 97 ntBASIC0.38□□□□□ -2.35
COL18A1P39060 SNORA27.1-201ENST00000362604 124 ntBASIC0.37□□□□□ -2.35
COL18A1P39060 Y_RNA.170-201ENST00000363746 110 ntBASIC0.37□□□□□ -2.35
COL18A1P39060 Y_RNA.359-201ENST00000365498 102 ntBASIC0.37□□□□□ -2.35
COL18A1P39060 SNORD116-11-201ENST00000383882 92 ntBASIC0.37□□□□□ -2.35
COL18A1P39060 Y_RNA.405-201ENST00000383979 100 ntBASIC0.37□□□□□ -2.35
Retrieved 100 of 98,524 protein–RNA pairs in 105 ms