Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 AC005786.1-201ENST00000588553 154 ntBASIC1.78□□□□□ -2.12
MSH3P20585 AC127459.3-201ENST00000624328 466 ntBASIC1.78□□□□□ -2.12
MSH3P20585 MUC15-203ENST00000455601 3156 ntAPPRIS P1 TSL 2 BASIC1.78□□□□□ -2.12
MSH3P20585 TPTE2-204ENST00000400103 1652 ntTSL 5 BASIC1.77□□□□□ -2.13
MSH3P20585 AC245060.5-201ENST00000610778 3293 ntBASIC1.77□□□□□ -2.13
MSH3P20585 RNU4-90P-201ENST00000362773 141 ntBASIC1.77□□□□□ -2.13
MSH3P20585 RNU6-862P-201ENST00000362804 105 ntBASIC1.77□□□□□ -2.13
MSH3P20585 Y_RNA.541-201ENST00000384640 113 ntBASIC1.77□□□□□ -2.13
MSH3P20585 MIR9-3-201ENST00000385084 90 ntBASIC1.77□□□□□ -2.13
MSH3P20585 MIR873-201ENST00000401120 77 ntBASIC1.77□□□□□ -2.13
MSH3P20585 MIR1253-201ENST00000408273 105 ntBASIC1.77□□□□□ -2.13
MSH3P20585 RNU6-1203P-201ENST00000410703 110 ntBASIC1.77□□□□□ -2.13
MSH3P20585 RPL31P63-201ENST00000422565 375 ntBASIC1.77□□□□□ -2.13
MSH3P20585 LINC01594-201ENST00000445083 611 ntTSL 5 BASIC1.77□□□□□ -2.13
MSH3P20585 AC093893.1-201ENST00000505781 510 ntTSL 5 BASIC1.77□□□□□ -2.13
MSH3P20585 TRAPPC2P7-201ENST00000509650 231 ntBASIC1.77□□□□□ -2.13
MSH3P20585 AC027419.1-201ENST00000522976 328 ntBASIC1.77□□□□□ -2.13
MSH3P20585 SNHG14-219ENST00000553134 470 ntTSL 2 BASIC1.77□□□□□ -2.13
MSH3P20585 AC092138.2-201ENST00000563811 428 ntTSL 5 BASIC1.77□□□□□ -2.13
MSH3P20585 MIR4419B-201ENST00000577260 68 ntBASIC1.77□□□□□ -2.13
MSH3P20585 AC024614.2-201ENST00000577584 372 ntBASIC1.77□□□□□ -2.13
MSH3P20585 MIR6845-201ENST00000613182 61 ntBASIC1.77□□□□□ -2.13
MSH3P20585 Y_RNA.124-201ENST00000363339 93 ntBASIC1.76□□□□□ -2.13
MSH3P20585 Y_RNA.329-201ENST00000365209 107 ntBASIC1.76□□□□□ -2.13
MSH3P20585 Y_RNA.383-201ENST00000383855 97 ntBASIC1.76□□□□□ -2.13
MSH3P20585 RNU6-417P-201ENST00000384712 107 ntBASIC1.76□□□□□ -2.13
MSH3P20585 MT-TW-201ENST00000387382 68 ntBASIC1.76□□□□□ -2.13
MSH3P20585 TRAJ50-201ENST00000390487 60 ntAPPRIS P1 BASIC1.76□□□□□ -2.13
MSH3P20585 TRAJ11-201ENST00000390526 60 ntAPPRIS P1 BASIC1.76□□□□□ -2.13
MSH3P20585 LINC00428-201ENST00000415620 227 ntTSL 5 BASIC1.76□□□□□ -2.13
MSH3P20585 RPS29P11-201ENST00000496507 171 ntBASIC1.76□□□□□ -2.13
MSH3P20585 RNU6-570P-201ENST00000517051 105 ntBASIC1.76□□□□□ -2.13
MSH3P20585 AL137100.2-201ENST00000555786 315 ntBASIC1.76□□□□□ -2.13
MSH3P20585 MIR3618-201ENST00000580330 88 ntBASIC1.76□□□□□ -2.13
MSH3P20585 AL773524.1-201ENST00000614065 229 ntBASIC1.76□□□□□ -2.13
MSH3P20585 U6.73-201ENST00000619194 103 ntBASIC1.76□□□□□ -2.13
MSH3P20585 AC084768.2-201ENST00000622736 221 ntBASIC1.76□□□□□ -2.13
MSH3P20585 CEP162-201ENST00000257766 5063 ntTSL 1 (best) BASIC1.76□□□□□ -2.13
MSH3P20585 RNU6-271P-201ENST00000363858 105 ntBASIC1.75□□□□□ -2.13
MSH3P20585 RNU6-290P-201ENST00000365212 101 ntBASIC1.75□□□□□ -2.13
MSH3P20585 RNU6-472P-201ENST00000384299 107 ntBASIC1.75□□□□□ -2.13
MSH3P20585 TRAJ48-201ENST00000390489 63 ntAPPRIS P1 BASIC1.75□□□□□ -2.13
MSH3P20585 RNU2-61P-201ENST00000411069 191 ntBASIC1.75□□□□□ -2.13
MSH3P20585 AC035139.1-201ENST00000423256 273 ntTSL 3 BASIC1.75□□□□□ -2.13
MSH3P20585 CST2P1-201ENST00000425770 87 ntBASIC1.75□□□□□ -2.13
MSH3P20585 RNA5SP20-201ENST00000515976 84 ntBASIC1.75□□□□□ -2.13
MSH3P20585 TRAV1-1-201ENST00000542354 392 ntAPPRIS P1 BASIC1.75□□□□□ -2.13
MSH3P20585 TDRD15-202ENST00000622654 5805 ntAPPRIS P1 BASIC1.74□□□□□ -2.13
MSH3P20585 Y_RNA.16-201ENST00000362421 102 ntBASIC1.74□□□□□ -2.13
MSH3P20585 Y_RNA.136-201ENST00000363444 102 ntBASIC1.74□□□□□ -2.13
MSH3P20585 Y_RNA.144-201ENST00000363521 113 ntBASIC1.74□□□□□ -2.13
MSH3P20585 RNU6-324P-201ENST00000363957 106 ntBASIC1.74□□□□□ -2.13
MSH3P20585 RNU1-96P-201ENST00000364163 162 ntBASIC1.74□□□□□ -2.13
MSH3P20585 Y_RNA.396-201ENST00000383949 103 ntBASIC1.74□□□□□ -2.13
MSH3P20585 Y_RNA.418-201ENST00000384029 102 ntBASIC1.74□□□□□ -2.13
MSH3P20585 RNU6-463P-201ENST00000384340 107 ntBASIC1.74□□□□□ -2.13
MSH3P20585 Y_RNA.483-201ENST00000384380 101 ntBASIC1.74□□□□□ -2.13
MSH3P20585 Y_RNA.518-201ENST00000384552 113 ntBASIC1.74□□□□□ -2.13
MSH3P20585 SNORA8-201ENST00000384574 139 ntBASIC1.74□□□□□ -2.13
MSH3P20585 Y_RNA.569-201ENST00000384749 103 ntBASIC1.74□□□□□ -2.13
MSH3P20585 SNORA48.1-201ENST00000390879 135 ntBASIC1.74□□□□□ -2.13
MSH3P20585 RNA5SP467-201ENST00000391274 118 ntBASIC1.74□□□□□ -2.13
MSH3P20585 SNORA26.9-201ENST00000391322 122 ntBASIC1.74□□□□□ -2.13
MSH3P20585 MIR1302-6-201ENST00000408466 90 ntBASIC1.74□□□□□ -2.13
MSH3P20585 RNA5SP501-201ENST00000410990 112 ntBASIC1.74□□□□□ -2.13
MSH3P20585 POLR2KP2-201ENST00000438155 177 ntBASIC1.74□□□□□ -2.13
MSH3P20585 MRPS10P1-201ENST00000448483 130 ntBASIC1.74□□□□□ -2.13
MSH3P20585 AC116666.1-201ENST00000453915 551 ntTSL 5 BASIC1.74□□□□□ -2.13
MSH3P20585 TRBVB-201ENST00000477100 408 ntBASIC1.74□□□□□ -2.13
MSH3P20585 RPS27P22-201ENST00000478056 241 ntBASIC1.74□□□□□ -2.13
MSH3P20585 SNORA70.12-201ENST00000516084 153 ntBASIC1.74□□□□□ -2.13
MSH3P20585 RNVU1-2-201ENST00000516326 135 ntBASIC1.74□□□□□ -2.13
MSH3P20585 HMSD-204ENST00000526932 162 ntTSL 3 BASIC1.74□□□□□ -2.13
MSH3P20585 AL035078.1-202ENST00000531627 413 ntTSL 2 BASIC1.74□□□□□ -2.13
MSH3P20585 AC023157.2-201ENST00000540596 141 ntBASIC1.74□□□□□ -2.13
MSH3P20585 AL122017.1-202ENST00000570612 319 ntTSL 5 BASIC1.74□□□□□ -2.13
MSH3P20585 MIR4503-201ENST00000582187 83 ntBASIC1.74□□□□□ -2.13
MSH3P20585 MIR4438-201ENST00000585271 93 ntBASIC1.74□□□□□ -2.13
MSH3P20585 DEFB117-201ENST00000602356 141 ntBASIC1.74□□□□□ -2.13
MSH3P20585 Hammerhead_HH9.1-201ENST00000616606 77 ntBASIC1.74□□□□□ -2.13
MSH3P20585 U6.104-201ENST00000637979 90 ntBASIC1.74□□□□□ -2.13
MSH3P20585 AC010615.1-201ENST00000594254 1764 ntBASIC1.74□□□□□ -2.13
MSH3P20585 RNU1-22P-201ENST00000363334 158 ntBASIC1.73□□□□□ -2.13
MSH3P20585 SNORA33-201ENST00000363664 130 ntBASIC1.73□□□□□ -2.13
MSH3P20585 RNU6-407P-201ENST00000365280 104 ntBASIC1.73□□□□□ -2.13
MSH3P20585 RNU6-326P-201ENST00000365480 107 ntBASIC1.73□□□□□ -2.13
MSH3P20585 Y_RNA.461-201ENST00000384263 103 ntBASIC1.73□□□□□ -2.13
MSH3P20585 RNU6-505P-201ENST00000384427 107 ntBASIC1.73□□□□□ -2.13
MSH3P20585 Y_RNA.556-201ENST00000384677 113 ntBASIC1.73□□□□□ -2.13
MSH3P20585 MIR504-201ENST00000385065 83 ntBASIC1.73□□□□□ -2.13
MSH3P20585 MIR1302-3-201ENST00000408128 138 ntBASIC1.73□□□□□ -2.13
MSH3P20585 AC244636.1-201ENST00000421152 228 ntBASIC1.73□□□□□ -2.13
MSH3P20585 RPL23AP6-201ENST00000446637 472 ntBASIC1.73□□□□□ -2.13
MSH3P20585 RPS26P55-201ENST00000471178 356 ntBASIC1.73□□□□□ -2.13
MSH3P20585 RNU7-128P-201ENST00000517247 62 ntBASIC1.73□□□□□ -2.13
MSH3P20585 AC087518.1-201ENST00000524098 187 ntTSL 3 BASIC1.73□□□□□ -2.13
MSH3P20585 AP001282.2-201ENST00000616149 309 ntBASIC1.73□□□□□ -2.13
MSH3P20585 5S_rRNA.11-201ENST00000618635 84 ntBASIC1.73□□□□□ -2.13
MSH3P20585 7SK.10-201ENST00000621414 298 ntBASIC1.73□□□□□ -2.13
MSH3P20585 TTK-211ENST00000627129 240 ntTSL 5 BASIC1.73□□□□□ -2.13
Retrieved 100 of 98,524 protein–RNA pairs in 169.4 ms