Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 RNU4-30P-201ENST00000410245 143 ntBASIC1.59□□□□□ -2.15
HOXD4P09016 KRTAP25-1-201ENST00000416044 370 ntAPPRIS P1 BASIC1.59□□□□□ -2.15
HOXD4P09016 AC060773.1-201ENST00000421698 310 ntBASIC1.59□□□□□ -2.15
HOXD4P09016 BX510359.4-201ENST00000423750 193 ntBASIC1.59□□□□□ -2.15
HOXD4P09016 MTND3P2-201ENST00000438452 342 ntBASIC1.59□□□□□ -2.15
HOXD4P09016 AC098869.1-201ENST00000481627 292 ntBASIC1.59□□□□□ -2.15
HOXD4P09016 AC008852.1-201ENST00000510198 451 ntTSL 2 BASIC1.59□□□□□ -2.15
HOXD4P09016 RNU7-110P-201ENST00000516891 62 ntBASIC1.59□□□□□ -2.15
HOXD4P09016 AC025647.1-201ENST00000517879 253 ntBASIC1.59□□□□□ -2.15
HOXD4P09016 MDM2-232ENST00000544561 213 ntTSL 5 BASIC1.59□□□□□ -2.15
HOXD4P09016 AC104819.3-201ENST00000603264 540 ntTSL 4 BASIC1.59□□□□□ -2.15
HOXD4P09016 GS1-279B7.1-204ENST00000641809 378 ntBASIC1.59□□□□□ -2.15
HOXD4P09016 RNU6-661P-201ENST00000362409 107 ntBASIC1.58□□□□□ -2.16
HOXD4P09016 Y_RNA.47-201ENST00000362697 108 ntBASIC1.58□□□□□ -2.16
HOXD4P09016 snoU2_19.2-201ENST00000363024 80 ntBASIC1.58□□□□□ -2.16
HOXD4P09016 RNY1P10-201ENST00000363268 113 ntBASIC1.58□□□□□ -2.16
HOXD4P09016 SNORD113-8-201ENST00000363497 74 ntBASIC1.58□□□□□ -2.16
HOXD4P09016 RNA5SP493-201ENST00000364115 91 ntBASIC1.58□□□□□ -2.16
HOXD4P09016 Y_RNA.286-201ENST00000364813 102 ntBASIC1.58□□□□□ -2.16
HOXD4P09016 SNORD48-201ENST00000364953 64 ntBASIC1.58□□□□□ -2.16
HOXD4P09016 RNA5SP363-201ENST00000365072 115 ntBASIC1.58□□□□□ -2.16
HOXD4P09016 Y_RNA.446-201ENST00000384178 104 ntBASIC1.58□□□□□ -2.16
HOXD4P09016 MIR568-201ENST00000385036 95 ntBASIC1.58□□□□□ -2.16
HOXD4P09016 RNU4-62P-201ENST00000410125 130 ntBASIC1.58□□□□□ -2.16
HOXD4P09016 RNU2-54P-201ENST00000410299 190 ntBASIC1.58□□□□□ -2.16
HOXD4P09016 RNU5A-5P-201ENST00000411054 116 ntBASIC1.58□□□□□ -2.16
HOXD4P09016 RNU6-1199P-201ENST00000411249 104 ntBASIC1.58□□□□□ -2.16
HOXD4P09016 AP1B1P2-201ENST00000416196 106 ntBASIC1.58□□□□□ -2.16
HOXD4P09016 AP003733.2-201ENST00000529409 171 ntBASIC1.58□□□□□ -2.16
HOXD4P09016 MIR3169-201ENST00000578032 83 ntBASIC1.58□□□□□ -2.16
HOXD4P09016 AC090398.1-202ENST00000580403 457 ntTSL 2 BASIC1.58□□□□□ -2.16
HOXD4P09016 AL359821.1-201ENST00000605519 182 ntBASIC1.58□□□□□ -2.16
HOXD4P09016 AC022441.3-201ENST00000605737 136 ntBASIC1.58□□□□□ -2.16
HOXD4P09016 AC011373.1-201ENST00000607270 237 ntBASIC1.58□□□□□ -2.16
HOXD4P09016 U6.115-201ENST00000636045 103 ntBASIC1.58□□□□□ -2.16
HOXD4P09016 AL159152.1-201ENST00000635019 2587 ntBASIC1.58□□□□□ -2.16
HOXD4P09016 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC1.58□□□□□ -2.16
HOXD4P09016 RNU6-23P-201ENST00000363283 107 ntBASIC1.57□□□□□ -2.16
HOXD4P09016 Y_RNA.149-201ENST00000363558 117 ntBASIC1.57□□□□□ -2.16
HOXD4P09016 Y_RNA.331-201ENST00000365267 102 ntBASIC1.57□□□□□ -2.16
HOXD4P09016 MIR215-201ENST00000384858 110 ntBASIC1.57□□□□□ -2.16
HOXD4P09016 TRAJ11-201ENST00000390526 60 ntAPPRIS P1 BASIC1.57□□□□□ -2.16
HOXD4P09016 RNU11-3P-201ENST00000391111 133 ntBASIC1.57□□□□□ -2.16
HOXD4P09016 Y_RNA.602-201ENST00000410535 92 ntBASIC1.57□□□□□ -2.16
HOXD4P09016 MTCYBP9-201ENST00000431021 303 ntBASIC1.57□□□□□ -2.16
HOXD4P09016 RNU1-131P-201ENST00000458943 161 ntBASIC1.57□□□□□ -2.16
HOXD4P09016 AC108516.1-201ENST00000503666 257 ntTSL 2 BASIC1.57□□□□□ -2.16
HOXD4P09016 TMEM132D-AS1-202ENST00000510001 293 ntTSL 1 (best) BASIC1.57□□□□□ -2.16
HOXD4P09016 MTCO2P24-201ENST00000515611 426 ntBASIC1.57□□□□□ -2.16
HOXD4P09016 RNU6-1143P-201ENST00000516125 104 ntBASIC1.57□□□□□ -2.16
HOXD4P09016 RNU6-155P-201ENST00000516347 100 ntBASIC1.57□□□□□ -2.16
HOXD4P09016 AL356133.2-201ENST00000521572 371 ntTSL 3 BASIC1.57□□□□□ -2.16
HOXD4P09016 AC090124.1-201ENST00000525097 448 ntTSL 3 BASIC1.57□□□□□ -2.16
HOXD4P09016 MIR3618-201ENST00000580330 88 ntBASIC1.57□□□□□ -2.16
HOXD4P09016 MIR8081-201ENST00000611533 95 ntBASIC1.57□□□□□ -2.16
HOXD4P09016 PRPSAP2-229ENST00000628609 192 ntTSL 5 BASIC1.57□□□□□ -2.16
HOXD4P09016 MCMDC2-207ENST00000492775 1831 ntTSL 1 (best) BASIC1.56□□□□□ -2.16
HOXD4P09016 KIAA1107-201ENST00000370378 4622 ntTSL 5 BASIC1.56□□□□□ -2.16
HOXD4P09016 SNORD81.1-201ENST00000363064 77 ntBASIC1.56□□□□□ -2.16
HOXD4P09016 Y_RNA.176-201ENST00000363815 109 ntBASIC1.56□□□□□ -2.16
HOXD4P09016 SNORD115-30-201ENST00000364117 82 ntBASIC1.56□□□□□ -2.16
HOXD4P09016 Y_RNA.243-201ENST00000364481 109 ntBASIC1.56□□□□□ -2.16
HOXD4P09016 RNU6-21P-201ENST00000384710 107 ntBASIC1.56□□□□□ -2.16
HOXD4P09016 RNU6-713P-201ENST00000384761 107 ntBASIC1.56□□□□□ -2.16
HOXD4P09016 MIR597-201ENST00000384968 97 ntBASIC1.56□□□□□ -2.16
HOXD4P09016 Y_RNA.581-201ENST00000391017 97 ntBASIC1.56□□□□□ -2.16
HOXD4P09016 AL355796.1-201ENST00000406706 323 ntBASIC1.56□□□□□ -2.16
HOXD4P09016 AC008134.1-201ENST00000420943 193 ntBASIC1.56□□□□□ -2.16
HOXD4P09016 AC005042.3-201ENST00000453230 174 ntBASIC1.56□□□□□ -2.16
HOXD4P09016 HSPE1P25-201ENST00000455484 251 ntBASIC1.56□□□□□ -2.16
HOXD4P09016 SNORD65B-201ENST00000459126 73 ntBASIC1.56□□□□□ -2.16
HOXD4P09016 RPS29P11-201ENST00000496507 171 ntBASIC1.56□□□□□ -2.16
HOXD4P09016 AC011406.1-201ENST00000512440 370 ntBASIC1.56□□□□□ -2.16
HOXD4P09016 TRMT112P2-201ENST00000512910 132 ntBASIC1.56□□□□□ -2.16
HOXD4P09016 RNU6-496P-201ENST00000516145 99 ntBASIC1.56□□□□□ -2.16
HOXD4P09016 RNU6-1041P-201ENST00000516254 102 ntBASIC1.56□□□□□ -2.16
HOXD4P09016 RNU6-570P-201ENST00000517051 105 ntBASIC1.56□□□□□ -2.16
HOXD4P09016 AP005660.1-201ENST00000522972 293 ntBASIC1.56□□□□□ -2.16
HOXD4P09016 HMSD-204ENST00000526932 162 ntTSL 3 BASIC1.56□□□□□ -2.16
HOXD4P09016 AC022254.1-201ENST00000567857 235 ntBASIC1.56□□□□□ -2.16
HOXD4P09016 AC005828.6-201ENST00000606610 232 ntBASIC1.56□□□□□ -2.16
HOXD4P09016 AC022513.1-201ENST00000624512 117 ntBASIC1.56□□□□□ -2.16
HOXD4P09016 AC245060.5-201ENST00000610778 3293 ntBASIC1.56□□□□□ -2.16
HOXD4P09016 RNU6-1266P-201ENST00000362794 105 ntBASIC1.55□□□□□ -2.16
HOXD4P09016 RNU6-1240P-201ENST00000365155 104 ntBASIC1.55□□□□□ -2.16
HOXD4P09016 SNORA20B-201ENST00000384220 132 ntBASIC1.55□□□□□ -2.16
HOXD4P09016 Y_RNA.541-201ENST00000384640 113 ntBASIC1.55□□□□□ -2.16
HOXD4P09016 RNU6-997P-201ENST00000384725 107 ntBASIC1.55□□□□□ -2.16
HOXD4P09016 AC078851.1-201ENST00000415918 298 ntTSL 3 BASIC1.55□□□□□ -2.16
HOXD4P09016 AL390729.2-201ENST00000416137 156 ntBASIC1.55□□□□□ -2.16
HOXD4P09016 HMGN2P34-201ENST00000437647 269 ntBASIC1.55□□□□□ -2.16
HOXD4P09016 AC069023.1-201ENST00000442231 221 ntTSL 3 BASIC1.55□□□□□ -2.16
HOXD4P09016 LINC01594-201ENST00000445083 611 ntTSL 5 BASIC1.55□□□□□ -2.16
HOXD4P09016 AC005840.1-201ENST00000498412 377 ntBASIC1.55□□□□□ -2.16
HOXD4P09016 SEPT14P8-201ENST00000508026 178 ntBASIC1.55□□□□□ -2.16
HOXD4P09016 AC027419.1-201ENST00000522976 328 ntBASIC1.55□□□□□ -2.16
HOXD4P09016 AL035078.1-202ENST00000531627 413 ntTSL 2 BASIC1.55□□□□□ -2.16
HOXD4P09016 AC092490.2-202ENST00000544922 462 ntTSL 3 BASIC1.55□□□□□ -2.16
HOXD4P09016 MIR4713-201ENST00000582691 75 ntBASIC1.55□□□□□ -2.16
HOXD4P09016 SNORD113-5-201ENST00000607261 78 ntBASIC1.55□□□□□ -2.16
Retrieved 100 of 98,524 protein–RNA pairs in 169.2 ms