Protein–RNA interactions for Protein: O95639

CPSF4, Cleavage and polyadenylation specificity factor subunit 4, humanhuman

Known RBP Predictions only

Length 269 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4O95639 MIR4653-201ENST00000585107 83 ntBASIC0.59□□□□□ -2.31
CPSF4O95639 AC093783.1-201ENST00000612976 329 ntBASIC0.59□□□□□ -2.31
CPSF4O95639 AC127459.3-201ENST00000624328 466 ntBASIC0.59□□□□□ -2.31
CPSF4O95639 LRRD1-203ENST00000430130 2661 ntAPPRIS P1 TSL 5 BASIC0.59□□□□□ -2.32
CPSF4O95639 TEX15-201ENST00000256246 10110 ntTSL 1 (best) BASIC0.58□□□□□ -2.32
CPSF4O95639 HSBP1P2-201ENST00000299671 229 ntBASIC0.58□□□□□ -2.32
CPSF4O95639 RNU4-41P-201ENST00000364426 143 ntBASIC0.58□□□□□ -2.32
CPSF4O95639 RNU6-593P-201ENST00000364716 112 ntBASIC0.58□□□□□ -2.32
CPSF4O95639 RNU6-136P-201ENST00000384663 107 ntBASIC0.58□□□□□ -2.32
CPSF4O95639 SNORD12-201ENST00000391002 90 ntBASIC0.58□□□□□ -2.32
CPSF4O95639 RNU6-510P-201ENST00000391239 108 ntBASIC0.58□□□□□ -2.32
CPSF4O95639 MIR873-201ENST00000401120 77 ntBASIC0.58□□□□□ -2.32
CPSF4O95639 AC063976.4-201ENST00000421971 163 ntBASIC0.58□□□□□ -2.32
CPSF4O95639 PSPC1-AS2-201ENST00000423023 376 ntTSL 3 BASIC0.58□□□□□ -2.32
CPSF4O95639 AL603825.1-201ENST00000438481 80 ntBASIC0.58□□□□□ -2.32
CPSF4O95639 Z98949.2-201ENST00000440996 144 ntBASIC0.58□□□□□ -2.32
CPSF4O95639 UBE2V1P7-201ENST00000446395 340 ntBASIC0.58□□□□□ -2.32
CPSF4O95639 RPS4XP11-201ENST00000446897 772 ntBASIC0.58□□□□□ -2.32
CPSF4O95639 AC233266.1-201ENST00000454518 96 ntBASIC0.58□□□□□ -2.32
CPSF4O95639 AL049830.1-201ENST00000468034 425 ntBASIC0.58□□□□□ -2.32
CPSF4O95639 RPL7P42-201ENST00000481005 679 ntBASIC0.58□□□□□ -2.32
CPSF4O95639 RPS26P48-201ENST00000491713 339 ntBASIC0.58□□□□□ -2.32
CPSF4O95639 Y_RNA.708-201ENST00000516950 96 ntBASIC0.58□□□□□ -2.32
CPSF4O95639 AC004812.1-201ENST00000540773 146 ntBASIC0.58□□□□□ -2.32
CPSF4O95639 AP003174.2-201ENST00000544663 294 ntTSL 3 BASIC0.58□□□□□ -2.32
CPSF4O95639 AL357312.1-201ENST00000603879 298 ntBASIC0.58□□□□□ -2.32
CPSF4O95639 AC005828.6-201ENST00000606610 232 ntBASIC0.58□□□□□ -2.32
CPSF4O95639 AC009229.3-201ENST00000608056 282 ntBASIC0.58□□□□□ -2.32
CPSF4O95639 AC242852.1-201ENST00000612151 96 ntBASIC0.58□□□□□ -2.32
CPSF4O95639 5S_rRNA.13-201ENST00000622298 123 ntBASIC0.58□□□□□ -2.32
CPSF4O95639 AC244015.1-201ENST00000622301 99 ntBASIC0.58□□□□□ -2.32
CPSF4O95639 MIR3674-201ENST00000636576 68 ntBASIC0.58□□□□□ -2.32
CPSF4O95639 PPP2R5A-205ENST00000537030 1719 ntTSL 2 BASIC0.58□□□□□ -2.32
CPSF4O95639 RNY1P10-201ENST00000363268 113 ntBASIC0.57□□□□□ -2.32
CPSF4O95639 Y_RNA.339-201ENST00000365325 102 ntBASIC0.57□□□□□ -2.32
CPSF4O95639 Y_RNA.404-201ENST00000383978 102 ntBASIC0.57□□□□□ -2.32
CPSF4O95639 RNU6-601P-201ENST00000384540 107 ntBASIC0.57□□□□□ -2.32
CPSF4O95639 RNA5SP475-201ENST00000410568 110 ntBASIC0.57□□□□□ -2.32
CPSF4O95639 MTND3P8-201ENST00000412909 339 ntBASIC0.57□□□□□ -2.32
CPSF4O95639 AC114482.1-201ENST00000418010 247 ntBASIC0.57□□□□□ -2.32
CPSF4O95639 AC092423.1-201ENST00000430165 186 ntBASIC0.57□□□□□ -2.32
CPSF4O95639 MTND3P10-201ENST00000450967 341 ntBASIC0.57□□□□□ -2.32
CPSF4O95639 SNORA40.9-201ENST00000515895 93 ntBASIC0.57□□□□□ -2.32
CPSF4O95639 RNU6-63P-201ENST00000516690 95 ntBASIC0.57□□□□□ -2.32
CPSF4O95639 RNU6-1096P-201ENST00000517089 102 ntBASIC0.57□□□□□ -2.32
CPSF4O95639 AP003484.1-201ENST00000530974 250 ntBASIC0.57□□□□□ -2.32
CPSF4O95639 LINC02425-201ENST00000536217 376 ntTSL 3 BASIC0.57□□□□□ -2.32
CPSF4O95639 AL121821.1-201ENST00000557067 530 ntTSL 3 BASIC0.57□□□□□ -2.32
CPSF4O95639 AC084882.1-201ENST00000561254 555 ntTSL 4 BASIC0.57□□□□□ -2.32
CPSF4O95639 AC133485.1-201ENST00000567176 124 ntBASIC0.57□□□□□ -2.32
CPSF4O95639 AC138907.6-201ENST00000568401 126 ntBASIC0.57□□□□□ -2.32
CPSF4O95639 UBE2E2-206ENST00000613545 282 ntTSL 5 BASIC0.57□□□□□ -2.32
CPSF4O95639 AC002553.4-201ENST00000616896 331 ntBASIC0.57□□□□□ -2.32
CPSF4O95639 KLRA1P-203ENST00000535939 2353 ntTSL 1 (best) BASIC0.57□□□□□ -2.32
CPSF4O95639 ZNF415-224ENST00000601493 2132 ntTSL 1 (best) BASIC0.56□□□□□ -2.32
CPSF4O95639 AC008163.1-202ENST00000636004 2889 ntBASIC0.56□□□□□ -2.32
CPSF4O95639 RNU6-969P-201ENST00000383900 105 ntBASIC0.56□□□□□ -2.32
CPSF4O95639 SNORA80D-201ENST00000384488 135 ntBASIC0.56□□□□□ -2.32
CPSF4O95639 MIR526A1-201ENST00000384897 85 ntBASIC0.56□□□□□ -2.32
CPSF4O95639 MIR520G-201ENST00000385064 90 ntBASIC0.56□□□□□ -2.32
CPSF4O95639 MIR92A1-201ENST00000385233 78 ntBASIC0.56□□□□□ -2.32
CPSF4O95639 MIR1277-201ENST00000408536 78 ntBASIC0.56□□□□□ -2.32
CPSF4O95639 AL356010.2-201ENST00000422844 197 ntTSL 3 BASIC0.56□□□□□ -2.32
CPSF4O95639 AL590422.1-201ENST00000451829 364 ntTSL 3 BASIC0.56□□□□□ -2.32
CPSF4O95639 RPL39P39-201ENST00000455840 151 ntBASIC0.56□□□□□ -2.32
CPSF4O95639 AC008243.1-201ENST00000504955 389 ntTSL 3 BASIC0.56□□□□□ -2.32
CPSF4O95639 AC011352.1-201ENST00000512300 793 ntBASIC0.56□□□□□ -2.32
CPSF4O95639 PSMC1P5-201ENST00000512850 177 ntBASIC0.56□□□□□ -2.32
CPSF4O95639 RNU6-237P-201ENST00000515985 71 ntBASIC0.56□□□□□ -2.32
CPSF4O95639 AF235103.2-201ENST00000525753 346 ntBASIC0.56□□□□□ -2.32
CPSF4O95639 AL358944.1-201ENST00000528537 144 ntBASIC0.56□□□□□ -2.32
CPSF4O95639 AC009093.3-203ENST00000565800 121 ntTSL 2 BASIC0.56□□□□□ -2.32
CPSF4O95639 BNIP3P10-201ENST00000605360 577 ntBASIC0.56□□□□□ -2.32
CPSF4O95639 MIR1244-1-201ENST00000612829 85 ntBASIC0.56□□□□□ -2.32
CPSF4O95639 MIR1244-3-201ENST00000635744 85 ntBASIC0.56□□□□□ -2.32
CPSF4O95639 MIR1244-2-201ENST00000636449 85 ntBASIC0.56□□□□□ -2.32
CPSF4O95639 MIR1244-4-202ENST00000636813 85 ntBASIC0.56□□□□□ -2.32
CPSF4O95639 Y_RNA.88-201ENST00000363029 99 ntBASIC0.55□□□□□ -2.32
CPSF4O95639 Y_RNA.243-201ENST00000364481 109 ntBASIC0.55□□□□□ -2.32
CPSF4O95639 RNU1-93P-201ENST00000364704 169 ntBASIC0.55□□□□□ -2.32
CPSF4O95639 SNORD114-24-201ENST00000365029 72 ntBASIC0.55□□□□□ -2.32
CPSF4O95639 DEFB134-201ENST00000382205 314 ntAPPRIS P1 TSL 1 (best) BASIC0.55□□□□□ -2.32
CPSF4O95639 Y_RNA.482-201ENST00000384377 111 ntBASIC0.55□□□□□ -2.32
CPSF4O95639 SNORD12B-201ENST00000410433 91 ntBASIC0.55□□□□□ -2.32
CPSF4O95639 AL606490.4-201ENST00000423117 127 ntBASIC0.55□□□□□ -2.32
CPSF4O95639 AL353614.1-201ENST00000445631 206 ntTSL 5 BASIC0.55□□□□□ -2.32
CPSF4O95639 AL035634.1-201ENST00000446768 372 ntTSL 2 BASIC0.55□□□□□ -2.32
CPSF4O95639 AC107399.1-201ENST00000451226 265 ntBASIC0.55□□□□□ -2.32
CPSF4O95639 AC009468.2-201ENST00000457372 366 ntTSL 5 BASIC0.55□□□□□ -2.32
CPSF4O95639 LINC01399-202ENST00000458450 244 ntBASIC0.55□□□□□ -2.32
CPSF4O95639 snoU13.25-201ENST00000458945 104 ntBASIC0.55□□□□□ -2.32
CPSF4O95639 AC069439.1-201ENST00000494739 167 ntBASIC0.55□□□□□ -2.32
CPSF4O95639 AC004817.2-201ENST00000561794 651 ntBASIC0.55□□□□□ -2.32
CPSF4O95639 FAM106DP-201ENST00000586416 501 ntBASIC0.55□□□□□ -2.32
CPSF4O95639 AC004832.4-201ENST00000608952 331 ntBASIC0.55□□□□□ -2.32
CPSF4O95639 AL096861.1-201ENST00000610899 123 ntBASIC0.55□□□□□ -2.32
CPSF4O95639 AC007014.2-201ENST00000615581 479 ntBASIC0.55□□□□□ -2.32
CPSF4O95639 AC092794.2-201ENST00000620933 563 ntBASIC0.55□□□□□ -2.32
CPSF4O95639 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC0.54□□□□□ -2.32
CPSF4O95639 RNU6-1301P-201ENST00000362724 104 ntBASIC0.54□□□□□ -2.32
Retrieved 100 of 98,524 protein–RNA pairs in 102.1 ms