Protein–RNA interactions for Protein: Q9P1Q0

VPS54, Vacuolar protein sorting-associated protein 54, humanhuman

Predictions only

Length 977 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54Q9P1Q0 AC005840.1-201ENST00000498412 377 ntBASIC1.29□□□□□ -2.2
VPS54Q9P1Q0 PRDX4P1-201ENST00000507189 574 ntBASIC1.29□□□□□ -2.2
VPS54Q9P1Q0 SNORA20.3-201ENST00000516880 132 ntBASIC1.29□□□□□ -2.2
VPS54Q9P1Q0 RNU7-172P-201ENST00000517125 64 ntBASIC1.29□□□□□ -2.2
VPS54Q9P1Q0 RNU6-264P-201ENST00000517134 104 ntBASIC1.29□□□□□ -2.2
VPS54Q9P1Q0 AC040896.1-201ENST00000613819 479 ntBASIC1.29□□□□□ -2.2
VPS54Q9P1Q0 AC087588.2-201ENST00000617667 426 ntBASIC1.29□□□□□ -2.2
VPS54Q9P1Q0 AC099654.14-201ENST00000638599 341 ntBASIC1.29□□□□□ -2.2
VPS54Q9P1Q0 AC018630.2-201ENST00000534866 2403 ntBASIC1.29□□□□□ -2.2
VPS54Q9P1Q0 CTDSPL2-202ENST00000558373 4255 ntTSL 1 (best) BASIC1.29□□□□□ -2.2
VPS54Q9P1Q0 RNU6-1301P-201ENST00000362724 104 ntBASIC1.28□□□□□ -2.2
VPS54Q9P1Q0 RNU1-22P-201ENST00000363334 158 ntBASIC1.28□□□□□ -2.2
VPS54Q9P1Q0 RNU6-890P-201ENST00000384121 107 ntBASIC1.28□□□□□ -2.2
VPS54Q9P1Q0 RNU6-939P-201ENST00000384634 107 ntBASIC1.28□□□□□ -2.2
VPS54Q9P1Q0 SNORA75.6-201ENST00000391318 127 ntBASIC1.28□□□□□ -2.2
VPS54Q9P1Q0 SNORD12B-201ENST00000410433 91 ntBASIC1.28□□□□□ -2.2
VPS54Q9P1Q0 RNA5SP475-201ENST00000410568 110 ntBASIC1.28□□□□□ -2.2
VPS54Q9P1Q0 LINC01073-201ENST00000441659 149 ntTSL 3 BASIC1.28□□□□□ -2.2
VPS54Q9P1Q0 AL591504.1-201ENST00000450681 414 ntTSL 3 BASIC1.28□□□□□ -2.2
VPS54Q9P1Q0 AL590422.1-201ENST00000451829 364 ntTSL 3 BASIC1.28□□□□□ -2.2
VPS54Q9P1Q0 MTCO3P10-201ENST00000455912 772 ntBASIC1.28□□□□□ -2.2
VPS54Q9P1Q0 RPL30P15-201ENST00000457129 321 ntBASIC1.28□□□□□ -2.2
VPS54Q9P1Q0 RNU6-1053P-201ENST00000515930 101 ntBASIC1.28□□□□□ -2.2
VPS54Q9P1Q0 RNA5SP20-201ENST00000515976 84 ntBASIC1.28□□□□□ -2.2
VPS54Q9P1Q0 AP003128.1-201ENST00000531414 448 ntTSL 2 BASIC1.28□□□□□ -2.2
VPS54Q9P1Q0 Z84484.1-202ENST00000612718 60 ntTSL 5 BASIC1.28□□□□□ -2.2
VPS54Q9P1Q0 MIR3674-201ENST00000636576 68 ntBASIC1.28□□□□□ -2.2
VPS54Q9P1Q0 PPP1R3A-201ENST00000284601 4384 ntAPPRIS P1 TSL 1 (best) BASIC1.28□□□□□ -2.21
VPS54Q9P1Q0 KIAA1551-201ENST00000312561 6230 ntAPPRIS P1 TSL 1 (best) BASIC1.28□□□□□ -2.21
VPS54Q9P1Q0 RNU6-1123P-201ENST00000362347 106 ntBASIC1.27□□□□□ -2.21
VPS54Q9P1Q0 SNORA27.1-201ENST00000362604 124 ntBASIC1.27□□□□□ -2.21
VPS54Q9P1Q0 RNY3P11-201ENST00000364153 102 ntBASIC1.27□□□□□ -2.21
VPS54Q9P1Q0 Y_RNA.577-201ENST00000384794 101 ntBASIC1.27□□□□□ -2.21
VPS54Q9P1Q0 SNORA69.1-201ENST00000390904 137 ntBASIC1.27□□□□□ -2.21
VPS54Q9P1Q0 MIR1285-1-201ENST00000408593 84 ntBASIC1.27□□□□□ -2.21
VPS54Q9P1Q0 RNU6-321P-201ENST00000410912 106 ntBASIC1.27□□□□□ -2.21
VPS54Q9P1Q0 MTCO3P19-201ENST00000415864 321 ntBASIC1.27□□□□□ -2.21
VPS54Q9P1Q0 LINC01870-201ENST00000427042 390 ntTSL 3 BASIC1.27□□□□□ -2.21
VPS54Q9P1Q0 RAB28P5-201ENST00000427490 651 ntBASIC1.27□□□□□ -2.21
VPS54Q9P1Q0 AC097462.1-201ENST00000514125 324 ntBASIC1.27□□□□□ -2.21
VPS54Q9P1Q0 RNU6-470P-201ENST00000515954 104 ntBASIC1.27□□□□□ -2.21
VPS54Q9P1Q0 RNU6-559P-201ENST00000516151 98 ntBASIC1.27□□□□□ -2.21
VPS54Q9P1Q0 CYP3A52P-201ENST00000563326 91 ntBASIC1.27□□□□□ -2.21
VPS54Q9P1Q0 U91328.3-201ENST00000608931 354 ntTSL 3 BASIC1.27□□□□□ -2.21
VPS54Q9P1Q0 AC091895.1-201ENST00000624494 256 ntBASIC1.27□□□□□ -2.21
VPS54Q9P1Q0 MIR6079-201ENST00000635807 62 ntBASIC1.27□□□□□ -2.21
VPS54Q9P1Q0 U6.115-201ENST00000636045 103 ntBASIC1.27□□□□□ -2.21
VPS54Q9P1Q0 CEP290-201ENST00000309041 7616 ntAPPRIS ALT1 TSL 5 BASIC1.27□□□□□ -2.21
VPS54Q9P1Q0 DENND4A-209ENST00000635620 5887 ntTSL 5 BASIC1.27□□□□□ -2.21
VPS54Q9P1Q0 RNU6-926P-201ENST00000384075 107 ntBASIC1.26□□□□□ -2.21
VPS54Q9P1Q0 AL034345.1-201ENST00000407768 123 ntBASIC1.26□□□□□ -2.21
VPS54Q9P1Q0 AC018865.2-201ENST00000423631 129 ntBASIC1.26□□□□□ -2.21
VPS54Q9P1Q0 MTND4P28-201ENST00000426217 387 ntBASIC1.26□□□□□ -2.21
VPS54Q9P1Q0 STAG3L5P-204ENST00000443759 179 ntBASIC1.26□□□□□ -2.21
VPS54Q9P1Q0 PGBD4P5-201ENST00000445958 426 ntBASIC1.26□□□□□ -2.21
VPS54Q9P1Q0 AL844175.1-201ENST00000455153 323 ntTSL 5 BASIC1.26□□□□□ -2.21
VPS54Q9P1Q0 RNU7-169P-201ENST00000459456 61 ntBASIC1.26□□□□□ -2.21
VPS54Q9P1Q0 RNU7-94P-201ENST00000459576 63 ntBASIC1.26□□□□□ -2.21
VPS54Q9P1Q0 AC078980.1-201ENST00000485384 262 ntTSL 2 BASIC1.26□□□□□ -2.21
VPS54Q9P1Q0 AC105758.1-201ENST00000506038 399 ntBASIC1.26□□□□□ -2.21
VPS54Q9P1Q0 SEMA6A-AS1-204ENST00000510682 521 ntTSL 5 BASIC1.26□□□□□ -2.21
VPS54Q9P1Q0 TRMT112P2-201ENST00000512910 132 ntBASIC1.26□□□□□ -2.21
VPS54Q9P1Q0 RNU6-408P-201ENST00000515910 100 ntBASIC1.26□□□□□ -2.21
VPS54Q9P1Q0 RN7SKP179-201ENST00000516126 217 ntBASIC1.26□□□□□ -2.21
VPS54Q9P1Q0 AC090124.1-201ENST00000525097 448 ntTSL 3 BASIC1.26□□□□□ -2.21
VPS54Q9P1Q0 AC019288.1-201ENST00000557918 224 ntBASIC1.26□□□□□ -2.21
VPS54Q9P1Q0 AC113139.1-201ENST00000605049 239 ntBASIC1.26□□□□□ -2.21
VPS54Q9P1Q0 FAS-AS1.2-201ENST00000620386 170 ntBASIC1.26□□□□□ -2.21
VPS54Q9P1Q0 MTND4LP32-201ENST00000636111 270 ntBASIC1.26□□□□□ -2.21
VPS54Q9P1Q0 MIR410-201ENST00000362222 80 ntBASIC1.25□□□□□ -2.21
VPS54Q9P1Q0 Y_RNA.142-201ENST00000363491 102 ntBASIC1.25□□□□□ -2.21
VPS54Q9P1Q0 Y_RNA.267-201ENST00000364679 109 ntBASIC1.25□□□□□ -2.21
VPS54Q9P1Q0 SNORA25.8-201ENST00000364831 128 ntBASIC1.25□□□□□ -2.21
VPS54Q9P1Q0 RNU6-392P-201ENST00000364926 101 ntBASIC1.25□□□□□ -2.21
VPS54Q9P1Q0 RNU6-1283P-201ENST00000365314 105 ntBASIC1.25□□□□□ -2.21
VPS54Q9P1Q0 RNU6-136P-201ENST00000384663 107 ntBASIC1.25□□□□□ -2.21
VPS54Q9P1Q0 MIR625-201ENST00000385047 85 ntBASIC1.25□□□□□ -2.21
VPS54Q9P1Q0 Y_RNA.592-201ENST00000410274 109 ntBASIC1.25□□□□□ -2.21
VPS54Q9P1Q0 CFLAR-AS1-202ENST00000474886 223 ntTSL 3 BASIC1.25□□□□□ -2.21
VPS54Q9P1Q0 RPL30P7-201ENST00000479312 323 ntBASIC1.25□□□□□ -2.21
VPS54Q9P1Q0 AC097501.2-201ENST00000502668 305 ntTSL 5 BASIC1.25□□□□□ -2.21
VPS54Q9P1Q0 AL512310.8-201ENST00000550183 120 ntBASIC1.25□□□□□ -2.21
VPS54Q9P1Q0 RPL21P9-201ENST00000556149 474 ntBASIC1.25□□□□□ -2.21
VPS54Q9P1Q0 LRRIQ1-202ENST00000393217 5394 ntAPPRIS P1 TSL 1 (best) BASIC1.25□□□□□ -2.21
VPS54Q9P1Q0 Y_RNA.124-201ENST00000363339 93 ntBASIC1.24□□□□□ -2.21
VPS54Q9P1Q0 RNU6-961P-201ENST00000363893 105 ntBASIC1.24□□□□□ -2.21
VPS54Q9P1Q0 LINC00583-201ENST00000381010 387 ntTSL 2 BASIC1.24□□□□□ -2.21
VPS54Q9P1Q0 LINC02238-202ENST00000436262 320 ntTSL 3 BASIC1.24□□□□□ -2.21
VPS54Q9P1Q0 AC091021.1-201ENST00000468051 388 ntBASIC1.24□□□□□ -2.21
VPS54Q9P1Q0 AL356133.2-201ENST00000521572 371 ntTSL 3 BASIC1.24□□□□□ -2.21
VPS54Q9P1Q0 AC055872.1-201ENST00000570978 278 ntBASIC1.24□□□□□ -2.21
VPS54Q9P1Q0 MIR3684-201ENST00000579779 74 ntBASIC1.24□□□□□ -2.21
VPS54Q9P1Q0 AC004467.1-201ENST00000615678 330 ntBASIC1.24□□□□□ -2.21
VPS54Q9P1Q0 AC073349.3-201ENST00000617616 186 ntBASIC1.24□□□□□ -2.21
VPS54Q9P1Q0 AC106754.2-201ENST00000623006 233 ntBASIC1.24□□□□□ -2.21
VPS54Q9P1Q0 SNORD3E-202ENST00000627253 216 ntBASIC1.24□□□□□ -2.21
VPS54Q9P1Q0 GNPDA2-204ENST00000509756 5382 ntAPPRIS ALT1 TSL 1 (best) BASIC1.24□□□□□ -2.21
VPS54Q9P1Q0 RNU6-376P-201ENST00000384731 106 ntBASIC1.23□□□□□ -2.21
VPS54Q9P1Q0 Y_RNA.605-201ENST00000410577 105 ntBASIC1.23□□□□□ -2.21
VPS54Q9P1Q0 AL135923.1-201ENST00000413066 196 ntTSL 3 BASIC1.23□□□□□ -2.21
Retrieved 100 of 98,524 protein–RNA pairs in 102.6 ms