Protein–RNA interactions for Protein: Q9P0L0

VAPA, Vesicle-associated membrane protein-associated protein A, humanhuman

Predictions only

Length 249 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VAPAQ9P0L0 MIR3684-201ENST00000579779 74 ntBASIC0.3□□□□□ -2.36
VAPAQ9P0L0 RNU6-89P-201ENST00000606519 100 ntBASIC0.3□□□□□ -2.36
VAPAQ9P0L0 AC019193.3-201ENST00000609144 554 ntBASIC0.3□□□□□ -2.36
VAPAQ9P0L0 AC127459.3-201ENST00000624328 466 ntBASIC0.3□□□□□ -2.36
VAPAQ9P0L0 MIR6516-201ENST00000630554 81 ntBASIC0.3□□□□□ -2.36
VAPAQ9P0L0 Y_RNA.373-201ENST00000365600 103 ntBASIC0.29□□□□□ -2.36
VAPAQ9P0L0 MIR516B2-201ENST00000385190 85 ntBASIC0.29□□□□□ -2.36
VAPAQ9P0L0 SNORD105-201ENST00000386910 85 ntBASIC0.29□□□□□ -2.36
VAPAQ9P0L0 RNU6-648P-201ENST00000410190 107 ntBASIC0.29□□□□□ -2.36
VAPAQ9P0L0 NDUFA5P4-201ENST00000436704 385 ntBASIC0.29□□□□□ -2.36
VAPAQ9P0L0 AL365258.1-201ENST00000440885 247 ntTSL 3 BASIC0.29□□□□□ -2.36
VAPAQ9P0L0 AC046134.1-201ENST00000514454 666 ntBASIC0.29□□□□□ -2.36
VAPAQ9P0L0 SNORA68.3-201ENST00000515906 83 ntBASIC0.29□□□□□ -2.36
VAPAQ9P0L0 RN7SKP164-201ENST00000516138 266 ntBASIC0.29□□□□□ -2.36
VAPAQ9P0L0 AL358937.1-201ENST00000524512 336 ntTSL 2 BASIC0.29□□□□□ -2.36
VAPAQ9P0L0 AF235103.2-201ENST00000525753 346 ntBASIC0.29□□□□□ -2.36
VAPAQ9P0L0 ZNF519P2-201ENST00000557032 169 ntBASIC0.29□□□□□ -2.36
VAPAQ9P0L0 MIR5000-201ENST00000577717 103 ntBASIC0.29□□□□□ -2.36
VAPAQ9P0L0 MIR4300-201ENST00000581016 96 ntBASIC0.29□□□□□ -2.36
VAPAQ9P0L0 DLEU2_5.1-201ENST00000615567 84 ntBASIC0.29□□□□□ -2.36
VAPAQ9P0L0 MCMDC2-207ENST00000492775 1831 ntTSL 1 (best) BASIC0.29□□□□□ -2.36
VAPAQ9P0L0 AC073544.1-201ENST00000600110 1595 ntBASIC0.28□□□□□ -2.36
VAPAQ9P0L0 Y_RNA.405-201ENST00000383979 100 ntBASIC0.28□□□□□ -2.36
VAPAQ9P0L0 Y_RNA.451-201ENST00000384200 100 ntBASIC0.28□□□□□ -2.36
VAPAQ9P0L0 RNU6-281P-201ENST00000384212 103 ntBASIC0.28□□□□□ -2.36
VAPAQ9P0L0 Y_RNA.524-201ENST00000384564 100 ntBASIC0.28□□□□□ -2.36
VAPAQ9P0L0 Y_RNA.561-201ENST00000384694 100 ntBASIC0.28□□□□□ -2.36
VAPAQ9P0L0 SNORD111-201ENST00000408139 94 ntBASIC0.28□□□□□ -2.36
VAPAQ9P0L0 RNU6ATAC33P-201ENST00000408647 126 ntBASIC0.28□□□□□ -2.36
VAPAQ9P0L0 PSPC1-AS2-201ENST00000423023 376 ntTSL 3 BASIC0.28□□□□□ -2.36
VAPAQ9P0L0 ERLEC1P1-201ENST00000433806 578 ntBASIC0.28□□□□□ -2.36
VAPAQ9P0L0 MTATP6P13-201ENST00000438531 667 ntBASIC0.28□□□□□ -2.36
VAPAQ9P0L0 PCNPP5-201ENST00000452246 481 ntBASIC0.28□□□□□ -2.36
VAPAQ9P0L0 AC069528.1-201ENST00000490344 705 ntTSL 3 BASIC0.28□□□□□ -2.36
VAPAQ9P0L0 SEMA6A-AS1-204ENST00000510682 521 ntTSL 5 BASIC0.28□□□□□ -2.36
VAPAQ9P0L0 AC093023.1-201ENST00000547375 507 ntBASIC0.28□□□□□ -2.36
VAPAQ9P0L0 AC002558.3-201ENST00000574021 401 ntTSL 3 BASIC0.28□□□□□ -2.36
VAPAQ9P0L0 MIR5696-201ENST00000578474 85 ntBASIC0.28□□□□□ -2.36
VAPAQ9P0L0 hsa-mir-548d-1.1-201ENST00000636914 97 ntBASIC0.28□□□□□ -2.36
VAPAQ9P0L0 AL442644.1-201ENST00000454390 3105 ntBASIC0.28□□□□□ -2.37
VAPAQ9P0L0 SNORD14.1-201ENST00000365609 90 ntBASIC0.27□□□□□ -2.37
VAPAQ9P0L0 RNU6-1264P-201ENST00000383891 107 ntBASIC0.27□□□□□ -2.37
VAPAQ9P0L0 Y_RNA.481-201ENST00000384373 102 ntBASIC0.27□□□□□ -2.37
VAPAQ9P0L0 MIR499A-201ENST00000384903 122 ntBASIC0.27□□□□□ -2.37
VAPAQ9P0L0 RNA5SP247-201ENST00000411181 105 ntBASIC0.27□□□□□ -2.37
VAPAQ9P0L0 MTND3P23-201ENST00000431980 347 ntBASIC0.27□□□□□ -2.37
VAPAQ9P0L0 LINC00345-201ENST00000443679 285 ntTSL 5 BASIC0.27□□□□□ -2.37
VAPAQ9P0L0 AC002350.1-201ENST00000490759 375 ntBASIC0.27□□□□□ -2.37
VAPAQ9P0L0 RNA5SP134-201ENST00000516492 96 ntBASIC0.27□□□□□ -2.37
VAPAQ9P0L0 SNORA74.3-201ENST00000517108 154 ntBASIC0.27□□□□□ -2.37
VAPAQ9P0L0 AC091047.1-201ENST00000533344 552 ntTSL 4 BASIC0.27□□□□□ -2.37
VAPAQ9P0L0 AC025030.2-201ENST00000552558 567 ntTSL 2 BASIC0.27□□□□□ -2.37
VAPAQ9P0L0 AC090510.1-201ENST00000567456 425 ntTSL 3 BASIC0.27□□□□□ -2.37
VAPAQ9P0L0 AC092954.2-201ENST00000609103 430 ntBASIC0.27□□□□□ -2.37
VAPAQ9P0L0 MIR5087-201ENST00000635826 76 ntBASIC0.27□□□□□ -2.37
VAPAQ9P0L0 RNU6-222P-201ENST00000362438 107 ntBASIC0.26□□□□□ -2.37
VAPAQ9P0L0 RNU6-117P-201ENST00000365415 107 ntBASIC0.26□□□□□ -2.37
VAPAQ9P0L0 RNU6ATAC20P-201ENST00000408436 127 ntBASIC0.26□□□□□ -2.37
VAPAQ9P0L0 RNU6-1068P-201ENST00000410958 103 ntBASIC0.26□□□□□ -2.37
VAPAQ9P0L0 Y_RNA.621-201ENST00000411065 96 ntBASIC0.26□□□□□ -2.37
VAPAQ9P0L0 AC243428.1-201ENST00000421099 264 ntBASIC0.26□□□□□ -2.37
VAPAQ9P0L0 MRPS18CP6-201ENST00000423587 223 ntBASIC0.26□□□□□ -2.37
VAPAQ9P0L0 LINC01707-201ENST00000425517 627 ntTSL 3 BASIC0.26□□□□□ -2.37
VAPAQ9P0L0 UQCRBP2-201ENST00000447827 297 ntBASIC0.26□□□□□ -2.37
VAPAQ9P0L0 RNU6-1114P-201ENST00000516022 107 ntBASIC0.26□□□□□ -2.37
VAPAQ9P0L0 RNU6-63P-201ENST00000516690 95 ntBASIC0.26□□□□□ -2.37
VAPAQ9P0L0 SNORA18.7-201ENST00000516910 131 ntBASIC0.26□□□□□ -2.37
VAPAQ9P0L0 AP003086.2-201ENST00000534168 437 ntTSL 3 BASIC0.26□□□□□ -2.37
VAPAQ9P0L0 AC145350.1-201ENST00000567426 208 ntBASIC0.26□□□□□ -2.37
VAPAQ9P0L0 MIR4764-201ENST00000580680 88 ntBASIC0.26□□□□□ -2.37
VAPAQ9P0L0 AC124303.1-201ENST00000605703 360 ntBASIC0.26□□□□□ -2.37
VAPAQ9P0L0 5S_rRNA.13-201ENST00000622298 123 ntBASIC0.26□□□□□ -2.37
VAPAQ9P0L0 AC027514.1-201ENST00000588561 1603 ntBASIC0.26□□□□□ -2.37
VAPAQ9P0L0 PTPN22-203ENST00000460620 1794 ntTSL 1 (best) BASIC0.25□□□□□ -2.37
VAPAQ9P0L0 RNA5SP48-201ENST00000363969 126 ntBASIC0.25□□□□□ -2.37
VAPAQ9P0L0 SNORD113.3-201ENST00000364630 78 ntBASIC0.25□□□□□ -2.37
VAPAQ9P0L0 Y_RNA.533-201ENST00000384596 114 ntBASIC0.25□□□□□ -2.37
VAPAQ9P0L0 MIR136-201ENST00000385207 82 ntBASIC0.25□□□□□ -2.37
VAPAQ9P0L0 MIR140-201ENST00000385282 100 ntBASIC0.25□□□□□ -2.37
VAPAQ9P0L0 Y_RNA.582-201ENST00000391023 95 ntBASIC0.25□□□□□ -2.37
VAPAQ9P0L0 MIR1827-201ENST00000408549 66 ntBASIC0.25□□□□□ -2.37
VAPAQ9P0L0 RNU6-1001P-201ENST00000411265 100 ntBASIC0.25□□□□□ -2.37
VAPAQ9P0L0 AC092447.3-201ENST00000426027 686 ntBASIC0.25□□□□□ -2.37
VAPAQ9P0L0 NCOA7-AS1-201ENST00000429007 501 ntTSL 3 BASIC0.25□□□□□ -2.37
VAPAQ9P0L0 USP9YP16-201ENST00000430287 407 ntBASIC0.25□□□□□ -2.37
VAPAQ9P0L0 AC108488.2-201ENST00000438485 421 ntAPPRIS P1 TSL 3 BASIC0.25□□□□□ -2.37
VAPAQ9P0L0 USP9YP23-201ENST00000455085 407 ntBASIC0.25□□□□□ -2.37
VAPAQ9P0L0 AC079467.1-201ENST00000508512 503 ntTSL 3 BASIC0.25□□□□□ -2.37
VAPAQ9P0L0 CARD18-202ENST00000530950 652 ntAPPRIS P1 TSL 5 BASIC0.25□□□□□ -2.37
VAPAQ9P0L0 LRRC34P1-201ENST00000542742 915 ntBASIC0.25□□□□□ -2.37
VAPAQ9P0L0 AC093027.1-201ENST00000546698 429 ntBASIC0.25□□□□□ -2.37
VAPAQ9P0L0 AL078603.1-201ENST00000603824 313 ntBASIC0.25□□□□□ -2.37
VAPAQ9P0L0 AL138726.1-201ENST00000614873 333 ntBASIC0.25□□□□□ -2.37
VAPAQ9P0L0 AC243829.3-201ENST00000622177 108 ntBASIC0.25□□□□□ -2.37
VAPAQ9P0L0 PPP2R5A-205ENST00000537030 1719 ntTSL 2 BASIC0.24□□□□□ -2.37
VAPAQ9P0L0 MIRLET7D-201ENST00000362263 87 ntBASIC0.24□□□□□ -2.37
VAPAQ9P0L0 RNU6-1085P-201ENST00000363576 107 ntBASIC0.24□□□□□ -2.37
VAPAQ9P0L0 RNU6-1105P-201ENST00000384774 107 ntBASIC0.24□□□□□ -2.37
VAPAQ9P0L0 MIR873-201ENST00000401120 77 ntBASIC0.24□□□□□ -2.37
VAPAQ9P0L0 RNU6-1304P-201ENST00000411374 106 ntBASIC0.24□□□□□ -2.37
Retrieved 100 of 98,524 protein–RNA pairs in 177.7 ms