Protein–RNA interactions for Protein: Q9NXS3

KLHL28, Kelch-like protein 28, humanhuman

Predictions only

Length 571 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KLHL28Q9NXS3 Y_RNA.2-201ENST00000362330 96 ntBASIC0.9□□□□□ -2.27
KLHL28Q9NXS3 RNU4-79P-201ENST00000362764 141 ntBASIC0.9□□□□□ -2.27
KLHL28Q9NXS3 RNU4-76P-201ENST00000364509 141 ntBASIC0.9□□□□□ -2.27
KLHL28Q9NXS3 Y_RNA.404-201ENST00000383978 102 ntBASIC0.9□□□□□ -2.27
KLHL28Q9NXS3 Y_RNA.490-201ENST00000384413 102 ntBASIC0.9□□□□□ -2.27
KLHL28Q9NXS3 RNU6-910P-201ENST00000390844 107 ntBASIC0.9□□□□□ -2.27
KLHL28Q9NXS3 RNU6-510P-201ENST00000391239 108 ntBASIC0.9□□□□□ -2.27
KLHL28Q9NXS3 RNU1-139P-201ENST00000391307 165 ntBASIC0.9□□□□□ -2.27
KLHL28Q9NXS3 RNU6-1050P-201ENST00000410388 107 ntBASIC0.9□□□□□ -2.27
KLHL28Q9NXS3 FCF1P9-201ENST00000412546 282 ntBASIC0.9□□□□□ -2.27
KLHL28Q9NXS3 MTND3P8-201ENST00000412909 339 ntBASIC0.9□□□□□ -2.27
KLHL28Q9NXS3 AC006159.2-201ENST00000421965 692 ntTSL 2 BASIC0.9□□□□□ -2.27
KLHL28Q9NXS3 USMG5P1-201ENST00000425964 177 ntBASIC0.9□□□□□ -2.27
KLHL28Q9NXS3 USP9YP16-201ENST00000430287 407 ntBASIC0.9□□□□□ -2.27
KLHL28Q9NXS3 AL353997.1-201ENST00000432936 108 ntBASIC0.9□□□□□ -2.27
KLHL28Q9NXS3 AL357873.1-201ENST00000449215 282 ntTSL 3 BASIC0.9□□□□□ -2.27
KLHL28Q9NXS3 ZEB1-AS1-204ENST00000450834 576 ntTSL 3 BASIC0.9□□□□□ -2.27
KLHL28Q9NXS3 USP9YP23-201ENST00000455085 407 ntBASIC0.9□□□□□ -2.27
KLHL28Q9NXS3 SNORD65B-201ENST00000459126 73 ntBASIC0.9□□□□□ -2.27
KLHL28Q9NXS3 AC018710.1-201ENST00000506509 158 ntBASIC0.9□□□□□ -2.27
KLHL28Q9NXS3 LINC02061-201ENST00000514225 335 ntTSL 3 BASIC0.9□□□□□ -2.27
KLHL28Q9NXS3 RNU6-1114P-201ENST00000516022 107 ntBASIC0.9□□□□□ -2.27
KLHL28Q9NXS3 RNU6-358P-201ENST00000516564 75 ntBASIC0.9□□□□□ -2.27
KLHL28Q9NXS3 RNU6-1016P-201ENST00000516689 94 ntBASIC0.9□□□□□ -2.27
KLHL28Q9NXS3 Y_RNA.706-201ENST00000516933 99 ntBASIC0.9□□□□□ -2.27
KLHL28Q9NXS3 AC060780.3-201ENST00000589464 80 ntBASIC0.9□□□□□ -2.27
KLHL28Q9NXS3 AC100812.1-201ENST00000607622 580 ntBASIC0.9□□□□□ -2.27
KLHL28Q9NXS3 AC068137.4-201ENST00000638485 296 ntBASIC0.9□□□□□ -2.27
KLHL28Q9NXS3 RNA5SP361-201ENST00000362686 118 ntBASIC0.89□□□□□ -2.27
KLHL28Q9NXS3 Y_RNA.184-201ENST00000363884 108 ntBASIC0.89□□□□□ -2.27
KLHL28Q9NXS3 MIR329-1-201ENST00000385028 80 ntBASIC0.89□□□□□ -2.27
KLHL28Q9NXS3 MIR653-201ENST00000385279 96 ntBASIC0.89□□□□□ -2.27
KLHL28Q9NXS3 MIR190B-201ENST00000401119 79 ntBASIC0.89□□□□□ -2.27
KLHL28Q9NXS3 RNU6ATAC8P-201ENST00000408460 126 ntBASIC0.89□□□□□ -2.27
KLHL28Q9NXS3 EIF1P2-201ENST00000428233 350 ntBASIC0.89□□□□□ -2.27
KLHL28Q9NXS3 MTND3P10-201ENST00000450967 341 ntBASIC0.89□□□□□ -2.27
KLHL28Q9NXS3 AC048334.1-201ENST00000477975 159 ntBASIC0.89□□□□□ -2.27
KLHL28Q9NXS3 AC105758.1-201ENST00000506038 399 ntBASIC0.89□□□□□ -2.27
KLHL28Q9NXS3 ACA64.5-201ENST00000516207 127 ntBASIC0.89□□□□□ -2.27
KLHL28Q9NXS3 Y_RNA.683-201ENST00000516508 93 ntBASIC0.89□□□□□ -2.27
KLHL28Q9NXS3 RNU6-107P-201ENST00000516643 102 ntBASIC0.89□□□□□ -2.27
KLHL28Q9NXS3 RN7SKP49-201ENST00000516675 260 ntBASIC0.89□□□□□ -2.27
KLHL28Q9NXS3 AC023157.2-201ENST00000540596 141 ntBASIC0.89□□□□□ -2.27
KLHL28Q9NXS3 AL020996.3-201ENST00000606617 222 ntBASIC0.89□□□□□ -2.27
KLHL28Q9NXS3 AC009229.3-201ENST00000608056 282 ntBASIC0.89□□□□□ -2.27
KLHL28Q9NXS3 UBE2E2-206ENST00000613545 282 ntTSL 5 BASIC0.89□□□□□ -2.27
KLHL28Q9NXS3 DENND4A-209ENST00000635620 5887 ntTSL 5 BASIC0.89□□□□□ -2.27
KLHL28Q9NXS3 AC018630.2-201ENST00000534866 2403 ntBASIC0.89□□□□□ -2.27
KLHL28Q9NXS3 ZNF415-224ENST00000601493 2132 ntTSL 1 (best) BASIC0.88□□□□□ -2.27
KLHL28Q9NXS3 Y_RNA.88-201ENST00000363029 99 ntBASIC0.88□□□□□ -2.27
KLHL28Q9NXS3 RNY1P16-201ENST00000363063 111 ntBASIC0.88□□□□□ -2.27
KLHL28Q9NXS3 RNU5F-3P-201ENST00000363767 117 ntBASIC0.88□□□□□ -2.27
KLHL28Q9NXS3 RNU6-601P-201ENST00000384540 107 ntBASIC0.88□□□□□ -2.27
KLHL28Q9NXS3 Y_RNA.557-201ENST00000384680 107 ntBASIC0.88□□□□□ -2.27
KLHL28Q9NXS3 SNORD12-201ENST00000391002 90 ntBASIC0.88□□□□□ -2.27
KLHL28Q9NXS3 RNU6-192P-201ENST00000391253 100 ntBASIC0.88□□□□□ -2.27
KLHL28Q9NXS3 MIR548J-201ENST00000408833 112 ntBASIC0.88□□□□□ -2.27
KLHL28Q9NXS3 ELOCP21-201ENST00000412558 336 ntBASIC0.88□□□□□ -2.27
KLHL28Q9NXS3 AC074085.1-201ENST00000413598 418 ntBASIC0.88□□□□□ -2.27
KLHL28Q9NXS3 AC245047.7-201ENST00000440265 293 ntBASIC0.88□□□□□ -2.27
KLHL28Q9NXS3 RNU7-87P-201ENST00000459343 62 ntBASIC0.88□□□□□ -2.27
KLHL28Q9NXS3 AC096721.1-201ENST00000513540 552 ntTSL 4 BASIC0.88□□□□□ -2.27
KLHL28Q9NXS3 RNU6-1213P-201ENST00000517075 94 ntBASIC0.88□□□□□ -2.27
KLHL28Q9NXS3 AC105029.1-201ENST00000520250 669 ntBASIC0.88□□□□□ -2.27
KLHL28Q9NXS3 APOOP3-201ENST00000536787 586 ntBASIC0.88□□□□□ -2.27
KLHL28Q9NXS3 MIR151B-201ENST00000584249 96 ntBASIC0.88□□□□□ -2.27
KLHL28Q9NXS3 MIR4438-201ENST00000585271 93 ntBASIC0.88□□□□□ -2.27
KLHL28Q9NXS3 AC211469.2-201ENST00000605461 205 ntBASIC0.88□□□□□ -2.27
KLHL28Q9NXS3 SNORA28-201ENST00000606769 126 ntBASIC0.88□□□□□ -2.27
KLHL28Q9NXS3 MIR6788-201ENST00000618842 66 ntBASIC0.88□□□□□ -2.27
KLHL28Q9NXS3 AC006435.5-201ENST00000624486 112 ntBASIC0.88□□□□□ -2.27
KLHL28Q9NXS3 hsa-mir-548d-1.1-201ENST00000636914 97 ntBASIC0.88□□□□□ -2.27
KLHL28Q9NXS3 ZGRF1-202ENST00000309071 3347 ntTSL 1 (best) BASIC0.87□□□□□ -2.27
KLHL28Q9NXS3 RNU6-199P-201ENST00000362954 107 ntBASIC0.87□□□□□ -2.27
KLHL28Q9NXS3 RNU6-1187P-201ENST00000364771 110 ntBASIC0.87□□□□□ -2.27
KLHL28Q9NXS3 AL355796.1-201ENST00000406706 323 ntBASIC0.87□□□□□ -2.27
KLHL28Q9NXS3 RNU4-14P-201ENST00000410858 122 ntBASIC0.87□□□□□ -2.27
KLHL28Q9NXS3 POLR2J4-204ENST00000418424 324 ntBASIC0.87□□□□□ -2.27
KLHL28Q9NXS3 STAG3L5P-204ENST00000443759 179 ntBASIC0.87□□□□□ -2.27
KLHL28Q9NXS3 AL035634.1-201ENST00000446768 372 ntTSL 2 BASIC0.87□□□□□ -2.27
KLHL28Q9NXS3 AC009468.2-201ENST00000457372 366 ntTSL 5 BASIC0.87□□□□□ -2.27
KLHL28Q9NXS3 RPL39P28-201ENST00000465655 155 ntBASIC0.87□□□□□ -2.27
KLHL28Q9NXS3 MTND4P17-201ENST00000470444 350 ntBASIC0.87□□□□□ -2.27
KLHL28Q9NXS3 ATP1B3-AS1-201ENST00000492725 376 ntTSL 5 BASIC0.87□□□□□ -2.27
KLHL28Q9NXS3 AC010469.2-201ENST00000496412 480 ntBASIC0.87□□□□□ -2.27
KLHL28Q9NXS3 AC097501.2-201ENST00000502668 305 ntTSL 5 BASIC0.87□□□□□ -2.27
KLHL28Q9NXS3 RNU6-120P-201ENST00000516077 103 ntBASIC0.87□□□□□ -2.27
KLHL28Q9NXS3 RNU7-30P-201ENST00000516835 62 ntBASIC0.87□□□□□ -2.27
KLHL28Q9NXS3 AP002001.1-203ENST00000534002 267 ntBASIC0.87□□□□□ -2.27
KLHL28Q9NXS3 LINC02293-201ENST00000548335 574 ntTSL 5 BASIC0.87□□□□□ -2.27
KLHL28Q9NXS3 AC090049.2-201ENST00000550377 109 ntBASIC0.87□□□□□ -2.27
KLHL28Q9NXS3 AL121579.1-201ENST00000555129 305 ntBASIC0.87□□□□□ -2.27
KLHL28Q9NXS3 AC090510.1-201ENST00000567456 425 ntTSL 3 BASIC0.87□□□□□ -2.27
KLHL28Q9NXS3 MIR4778-201ENST00000577635 80 ntBASIC0.87□□□□□ -2.27
KLHL28Q9NXS3 AC011712.1-201ENST00000588959 234 ntBASIC0.87□□□□□ -2.27
KLHL28Q9NXS3 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC0.87□□□□□ -2.27
KLHL28Q9NXS3 Y_RNA.364-201ENST00000365532 101 ntBASIC0.86□□□□□ -2.27
KLHL28Q9NXS3 RNU6-1145P-201ENST00000384246 107 ntBASIC0.86□□□□□ -2.27
KLHL28Q9NXS3 SNORD41-201ENST00000386967 70 ntBASIC0.86□□□□□ -2.27
KLHL28Q9NXS3 AC063976.4-201ENST00000421971 163 ntBASIC0.86□□□□□ -2.27
Retrieved 100 of 98,524 protein–RNA pairs in 199.6 ms