Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 AC026436.1-201ENST00000510537 270 ntBASIC2.5□□□□□ -2.01
TDP1Q9NUW8 SNORD116-28-201ENST00000516123 91 ntBASIC2.5□□□□□ -2.01
TDP1Q9NUW8 RNU6-1337P-201ENST00000516525 95 ntBASIC2.5□□□□□ -2.01
TDP1Q9NUW8 SUMO2P18-201ENST00000518873 252 ntBASIC2.5□□□□□ -2.01
TDP1Q9NUW8 AC084365.1-201ENST00000552470 310 ntTSL 3 BASIC2.5□□□□□ -2.01
TDP1Q9NUW8 AL442067.1-201ENST00000613261 223 ntBASIC2.5□□□□□ -2.01
TDP1Q9NUW8 DSCR8-208ENST00000614538 403 ntAPPRIS P5 TSL 5 BASIC2.5□□□□□ -2.01
TDP1Q9NUW8 CEP44-203ENST00000426172 3037 ntTSL 5 BASIC2.5□□□□□ -2.01
TDP1Q9NUW8 TXLNGY-201ENST00000253320 7299 ntTSL 2 BASIC2.5□□□□□ -2.01
TDP1Q9NUW8 SKIL-202ENST00000413427 2702 ntTSL 1 (best) BASIC2.5□□□□□ -2.01
TDP1Q9NUW8 PCM1-222ENST00000524226 5955 ntTSL 1 (best) BASIC2.5□□□□□ -2.01
TDP1Q9NUW8 ZNF280D-204ENST00000558320 3666 ntTSL 1 (best) BASIC2.49□□□□□ -2.01
TDP1Q9NUW8 WWP1-201ENST00000265428 3362 ntAPPRIS P1 TSL 1 (best) BASIC2.49□□□□□ -2.01
TDP1Q9NUW8 CENPCP1-201ENST00000533085 2578 ntBASIC2.49□□□□□ -2.01
TDP1Q9NUW8 DYNC2H1-202ENST00000375735 13678 ntAPPRIS ALT1 TSL 1 (best) BASIC2.49□□□□□ -2.01
TDP1Q9NUW8 Y_RNA.456-201ENST00000384232 111 ntBASIC2.49□□□□□ -2.01
TDP1Q9NUW8 RNU6-763P-201ENST00000390865 106 ntBASIC2.49□□□□□ -2.01
TDP1Q9NUW8 RNU6ATAC37P-201ENST00000408328 131 ntBASIC2.49□□□□□ -2.01
TDP1Q9NUW8 AC007064.1-201ENST00000412238 351 ntBASIC2.49□□□□□ -2.01
TDP1Q9NUW8 BTF3P11-201ENST00000426582 477 ntBASIC2.49□□□□□ -2.01
TDP1Q9NUW8 AL353680.1-201ENST00000433788 337 ntTSL 3 BASIC2.49□□□□□ -2.01
TDP1Q9NUW8 HMGN2P34-201ENST00000437647 269 ntBASIC2.49□□□□□ -2.01
TDP1Q9NUW8 AL353689.1-201ENST00000438895 199 ntBASIC2.49□□□□□ -2.01
TDP1Q9NUW8 AC010409.1-201ENST00000487382 476 ntBASIC2.49□□□□□ -2.01
TDP1Q9NUW8 RNU6-1041P-201ENST00000516254 102 ntBASIC2.49□□□□□ -2.01
TDP1Q9NUW8 AC130289.1-201ENST00000577321 73 ntBASIC2.49□□□□□ -2.01
TDP1Q9NUW8 AL008718.3-201ENST00000610217 321 ntBASIC2.49□□□□□ -2.01
TDP1Q9NUW8 AC016717.2-201ENST00000609089 5141 ntBASIC2.49□□□□□ -2.01
TDP1Q9NUW8 PRKD3-201ENST00000234179 5900 ntAPPRIS P1 TSL 1 (best) BASIC2.48□□□□□ -2.01
TDP1Q9NUW8 AL356292.1-201ENST00000283110 373 ntBASIC2.48□□□□□ -2.01
TDP1Q9NUW8 snoU2-30.2-201ENST00000362805 70 ntBASIC2.48□□□□□ -2.01
TDP1Q9NUW8 RNA5SP493-201ENST00000364115 91 ntBASIC2.48□□□□□ -2.01
TDP1Q9NUW8 Y_RNA.287-201ENST00000364853 94 ntBASIC2.48□□□□□ -2.01
TDP1Q9NUW8 Y_RNA.292-201ENST00000364904 97 ntBASIC2.48□□□□□ -2.01
TDP1Q9NUW8 SNORA26.5-201ENST00000391215 123 ntBASIC2.48□□□□□ -2.01
TDP1Q9NUW8 MIR1298-201ENST00000408783 112 ntBASIC2.48□□□□□ -2.01
TDP1Q9NUW8 Y_RNA.638-201ENST00000459374 113 ntBASIC2.48□□□□□ -2.01
TDP1Q9NUW8 RPS29P21-201ENST00000496272 170 ntBASIC2.48□□□□□ -2.01
TDP1Q9NUW8 AC111194.2-201ENST00000511222 455 ntTSL 5 BASIC2.48□□□□□ -2.01
TDP1Q9NUW8 RNA5SP281-201ENST00000516504 135 ntBASIC2.48□□□□□ -2.01
TDP1Q9NUW8 MIR4438-201ENST00000585271 93 ntBASIC2.48□□□□□ -2.01
TDP1Q9NUW8 AL031274.2-201ENST00000599419 203 ntBASIC2.48□□□□□ -2.01
TDP1Q9NUW8 AC011921.3-201ENST00000605540 361 ntBASIC2.48□□□□□ -2.01
TDP1Q9NUW8 AL078604.3-201ENST00000615580 211 ntBASIC2.48□□□□□ -2.01
TDP1Q9NUW8 AKAP9-203ENST00000359028 12247 ntAPPRIS ALT2 TSL 5 BASIC2.48□□□□□ -2.01
TDP1Q9NUW8 RGPD6-201ENST00000329516 7165 ntAPPRIS P1 TSL 1 (best) BASIC2.48□□□□□ -2.01
TDP1Q9NUW8 Y_RNA.200-201ENST00000364018 102 ntBASIC2.47□□□□□ -2.01
TDP1Q9NUW8 RNU6-1048P-201ENST00000364054 107 ntBASIC2.47□□□□□ -2.01
TDP1Q9NUW8 RNU6-200P-201ENST00000364743 107 ntBASIC2.47□□□□□ -2.01
TDP1Q9NUW8 RNY4P28-201ENST00000365281 93 ntBASIC2.47□□□□□ -2.01
TDP1Q9NUW8 RNU6-211P-201ENST00000384047 107 ntBASIC2.47□□□□□ -2.01
TDP1Q9NUW8 SNORA72.4-201ENST00000384174 132 ntBASIC2.47□□□□□ -2.01
TDP1Q9NUW8 SNORD116-13-201ENST00000384408 92 ntBASIC2.47□□□□□ -2.01
TDP1Q9NUW8 RNU6-417P-201ENST00000384712 107 ntBASIC2.47□□□□□ -2.01
TDP1Q9NUW8 RN7SKP223-201ENST00000410582 62 ntBASIC2.47□□□□□ -2.01
TDP1Q9NUW8 AL162400.2-201ENST00000427547 157 ntTSL 3 BASIC2.47□□□□□ -2.01
TDP1Q9NUW8 RPS20P10-201ENST00000451209 253 ntBASIC2.47□□□□□ -2.01
TDP1Q9NUW8 U8.19-201ENST00000459095 133 ntBASIC2.47□□□□□ -2.01
TDP1Q9NUW8 RNU6-138P-201ENST00000515952 107 ntBASIC2.47□□□□□ -2.01
TDP1Q9NUW8 RNU6-1146P-201ENST00000516282 102 ntBASIC2.47□□□□□ -2.01
TDP1Q9NUW8 RNA5SP137-201ENST00000516833 135 ntBASIC2.47□□□□□ -2.01
TDP1Q9NUW8 RNU1-104P-201ENST00000517280 175 ntBASIC2.47□□□□□ -2.01
TDP1Q9NUW8 AL137100.2-201ENST00000555786 315 ntBASIC2.47□□□□□ -2.01
TDP1Q9NUW8 MIR3169-201ENST00000578032 83 ntBASIC2.47□□□□□ -2.01
TDP1Q9NUW8 AC073349.3-201ENST00000617616 186 ntBASIC2.47□□□□□ -2.01
TDP1Q9NUW8 5S_rRNA.13-201ENST00000622298 123 ntBASIC2.47□□□□□ -2.01
TDP1Q9NUW8 AGTPBP1-205ENST00000376083 4208 ntAPPRIS P1 TSL 1 (best) BASIC2.46□□□□□ -2.02
TDP1Q9NUW8 RNU6-23P-201ENST00000363283 107 ntBASIC2.46□□□□□ -2.02
TDP1Q9NUW8 RNU1-22P-201ENST00000363334 158 ntBASIC2.46□□□□□ -2.02
TDP1Q9NUW8 RNA5SP393-201ENST00000363423 117 ntBASIC2.46□□□□□ -2.02
TDP1Q9NUW8 Y_RNA.274-201ENST00000364714 101 ntBASIC2.46□□□□□ -2.02
TDP1Q9NUW8 MIR29C-201ENST00000385231 88 ntBASIC2.46□□□□□ -2.02
TDP1Q9NUW8 ATP5J2P3-201ENST00000451550 258 ntBASIC2.46□□□□□ -2.02
TDP1Q9NUW8 snoU13.26-201ENST00000459452 105 ntBASIC2.46□□□□□ -2.02
TDP1Q9NUW8 AC095059.1-201ENST00000502570 349 ntTSL 5 BASIC2.46□□□□□ -2.02
TDP1Q9NUW8 AC097462.1-201ENST00000514125 324 ntBASIC2.46□□□□□ -2.02
TDP1Q9NUW8 AC074131.1-201ENST00000514662 253 ntTSL 2 BASIC2.46□□□□□ -2.02
TDP1Q9NUW8 RNU6-63P-201ENST00000516690 95 ntBASIC2.46□□□□□ -2.02
TDP1Q9NUW8 AC007598.1-202ENST00000561528 435 ntTSL 3 BASIC2.46□□□□□ -2.02
TDP1Q9NUW8 MIR4648-201ENST00000580107 72 ntBASIC2.46□□□□□ -2.02
TDP1Q9NUW8 AL353149.1-201ENST00000610667 244 ntBASIC2.46□□□□□ -2.02
TDP1Q9NUW8 U6.73-201ENST00000619194 103 ntBASIC2.46□□□□□ -2.02
TDP1Q9NUW8 AC010297.1-201ENST00000623948 149 ntBASIC2.46□□□□□ -2.02
TDP1Q9NUW8 MIR338-201ENST00000636369 67 ntBASIC2.46□□□□□ -2.02
TDP1Q9NUW8 NEB-203ENST00000397345 26202 ntAPPRIS ALT2 TSL 5 BASIC2.46□□□□□ -2.02
TDP1Q9NUW8 NEB-209ENST00000427231 26202 ntAPPRIS ALT2 TSL 5 BASIC2.46□□□□□ -2.02
TDP1Q9NUW8 KTN1-214ENST00000554507 2057 ntTSL 1 (best) BASIC2.46□□□□□ -2.02
TDP1Q9NUW8 EYS-202ENST00000342421 2168 ntTSL 1 (best) BASIC2.46□□□□□ -2.02
TDP1Q9NUW8 DNAH14-210ENST00000439375 13548 ntAPPRIS P1 TSL 5 BASIC2.46□□□□□ -2.02
TDP1Q9NUW8 FABP12-201ENST00000360464 551 ntAPPRIS P1 TSL 1 (best) BASIC2.45□□□□□ -2.02
TDP1Q9NUW8 Y_RNA.199-201ENST00000364014 102 ntBASIC2.45□□□□□ -2.02
TDP1Q9NUW8 RNU6-117P-201ENST00000365415 107 ntBASIC2.45□□□□□ -2.02
TDP1Q9NUW8 RNU1-138P-201ENST00000384093 164 ntBASIC2.45□□□□□ -2.02
TDP1Q9NUW8 Y_RNA.626-201ENST00000411288 95 ntBASIC2.45□□□□□ -2.02
TDP1Q9NUW8 FO680682.1-201ENST00000421261 345 ntTSL 3 BASIC2.45□□□□□ -2.02
TDP1Q9NUW8 SNORA31.15-201ENST00000516771 132 ntBASIC2.45□□□□□ -2.02
TDP1Q9NUW8 MIR1273D-201ENST00000577266 86 ntBASIC2.45□□□□□ -2.02
TDP1Q9NUW8 AC004832.4-201ENST00000608952 331 ntBASIC2.45□□□□□ -2.02
TDP1Q9NUW8 ZMYM1-203ENST00000373330 4203 ntAPPRIS P1 TSL 1 (best) BASIC2.45□□□□□ -2.02
TDP1Q9NUW8 AC134026.1-201ENST00000623249 2239 ntBASIC2.45□□□□□ -2.02
Retrieved 100 of 98,524 protein–RNA pairs in 146.1 ms