Protein–RNA interactions for Protein: Q9BQ90

KLHDC3, Kelch domain-containing protein 3, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KLHDC3Q9BQ90 SUMO2P16-201ENST00000519475 264 ntBASIC1.07□□□□□ -2.24
KLHDC3Q9BQ90 RPL21P9-201ENST00000556149 474 ntBASIC1.07□□□□□ -2.24
KLHDC3Q9BQ90 MIR4498-201ENST00000577599 66 ntBASIC1.07□□□□□ -2.24
KLHDC3Q9BQ90 AC016727.1-205ENST00000605437 569 ntBASIC1.07□□□□□ -2.24
KLHDC3Q9BQ90 MIR1244-1-201ENST00000612829 85 ntBASIC1.07□□□□□ -2.24
KLHDC3Q9BQ90 AC073349.3-201ENST00000617616 186 ntBASIC1.07□□□□□ -2.24
KLHDC3Q9BQ90 MIR1244-3-201ENST00000635744 85 ntBASIC1.07□□□□□ -2.24
KLHDC3Q9BQ90 MIR1244-2-201ENST00000636449 85 ntBASIC1.07□□□□□ -2.24
KLHDC3Q9BQ90 MIR3674-201ENST00000636576 68 ntBASIC1.07□□□□□ -2.24
KLHDC3Q9BQ90 MIR1244-4-202ENST00000636813 85 ntBASIC1.07□□□□□ -2.24
KLHDC3Q9BQ90 CCDC68-202ENST00000432185 4014 ntAPPRIS P1 TSL 1 (best) BASIC1.06□□□□□ -2.24
KLHDC3Q9BQ90 RNU6-99P-201ENST00000364721 107 ntBASIC1.06□□□□□ -2.24
KLHDC3Q9BQ90 RNU6-407P-201ENST00000365280 104 ntBASIC1.06□□□□□ -2.24
KLHDC3Q9BQ90 Y_RNA.577-201ENST00000384794 101 ntBASIC1.06□□□□□ -2.24
KLHDC3Q9BQ90 MIR625-201ENST00000385047 85 ntBASIC1.06□□□□□ -2.24
KLHDC3Q9BQ90 SNORA75.6-201ENST00000391318 127 ntBASIC1.06□□□□□ -2.24
KLHDC3Q9BQ90 RNU4-14P-201ENST00000410858 122 ntBASIC1.06□□□□□ -2.24
KLHDC3Q9BQ90 RNU6-370P-201ENST00000411008 104 ntBASIC1.06□□□□□ -2.24
KLHDC3Q9BQ90 AC114482.1-201ENST00000418010 247 ntBASIC1.06□□□□□ -2.24
KLHDC3Q9BQ90 PSPC1-AS2-201ENST00000423023 376 ntTSL 3 BASIC1.06□□□□□ -2.24
KLHDC3Q9BQ90 RPL39P38-201ENST00000467018 153 ntBASIC1.06□□□□□ -2.24
KLHDC3Q9BQ90 AC082651.2-201ENST00000496833 166 ntBASIC1.06□□□□□ -2.24
KLHDC3Q9BQ90 AC005840.1-201ENST00000498412 377 ntBASIC1.06□□□□□ -2.24
KLHDC3Q9BQ90 RNU6-1213P-201ENST00000517075 94 ntBASIC1.06□□□□□ -2.24
KLHDC3Q9BQ90 AC005828.6-201ENST00000606610 232 ntBASIC1.06□□□□□ -2.24
KLHDC3Q9BQ90 AL021879.1-201ENST00000611756 288 ntBASIC1.06□□□□□ -2.24
KLHDC3Q9BQ90 U6.115-201ENST00000636045 103 ntBASIC1.06□□□□□ -2.24
KLHDC3Q9BQ90 RNU6-1188P-201ENST00000363795 107 ntBASIC1.05□□□□□ -2.24
KLHDC3Q9BQ90 MIR873-201ENST00000401120 77 ntBASIC1.05□□□□□ -2.24
KLHDC3Q9BQ90 SNORD12B-201ENST00000410433 91 ntBASIC1.05□□□□□ -2.24
KLHDC3Q9BQ90 RNA5SP475-201ENST00000410568 110 ntBASIC1.05□□□□□ -2.24
KLHDC3Q9BQ90 AL135923.1-201ENST00000413066 196 ntTSL 3 BASIC1.05□□□□□ -2.24
KLHDC3Q9BQ90 AC018511.2-201ENST00000413431 189 ntTSL 3 BASIC1.05□□□□□ -2.24
KLHDC3Q9BQ90 RNU6-1278P-201ENST00000516130 107 ntBASIC1.05□□□□□ -2.24
KLHDC3Q9BQ90 RNU6-264P-201ENST00000517134 104 ntBASIC1.05□□□□□ -2.24
KLHDC3Q9BQ90 AL356133.2-201ENST00000521572 371 ntTSL 3 BASIC1.05□□□□□ -2.24
KLHDC3Q9BQ90 AP002001.1-203ENST00000534002 267 ntBASIC1.05□□□□□ -2.24
KLHDC3Q9BQ90 hsa-mir-3119-1.1-201ENST00000577602 85 ntBASIC1.05□□□□□ -2.24
KLHDC3Q9BQ90 MIR5690-201ENST00000583739 73 ntBASIC1.05□□□□□ -2.24
KLHDC3Q9BQ90 AL359821.1-201ENST00000605519 182 ntBASIC1.05□□□□□ -2.24
KLHDC3Q9BQ90 ST7-OT4_1.1-201ENST00000615322 200 ntBASIC1.05□□□□□ -2.24
KLHDC3Q9BQ90 SNORD114-7-201ENST00000362520 77 ntBASIC1.04□□□□□ -2.24
KLHDC3Q9BQ90 Y_RNA.327-201ENST00000365201 102 ntBASIC1.04□□□□□ -2.24
KLHDC3Q9BQ90 RNU6-1310P-201ENST00000384153 107 ntBASIC1.04□□□□□ -2.24
KLHDC3Q9BQ90 MIR660-201ENST00000385235 97 ntBASIC1.04□□□□□ -2.24
KLHDC3Q9BQ90 TRAJ47-201ENST00000390490 57 ntAPPRIS P1 BASIC1.04□□□□□ -2.24
KLHDC3Q9BQ90 SNORA69.1-201ENST00000390904 137 ntBASIC1.04□□□□□ -2.24
KLHDC3Q9BQ90 Y_RNA.646-201ENST00000410980 101 ntBASIC1.04□□□□□ -2.24
KLHDC3Q9BQ90 NCKAP5-IT1-201ENST00000416437 554 ntTSL 4 BASIC1.04□□□□□ -2.24
KLHDC3Q9BQ90 MTND4P28-201ENST00000426217 387 ntBASIC1.04□□□□□ -2.24
KLHDC3Q9BQ90 AC015922.2-201ENST00000435593 184 ntBASIC1.04□□□□□ -2.24
KLHDC3Q9BQ90 AC098614.3-201ENST00000438957 440 ntBASIC1.04□□□□□ -2.24
KLHDC3Q9BQ90 AL137792.2-201ENST00000443484 235 ntBASIC1.04□□□□□ -2.24
KLHDC3Q9BQ90 STAG3L5P-204ENST00000443759 179 ntBASIC1.04□□□□□ -2.24
KLHDC3Q9BQ90 AL163540.1-201ENST00000485382 386 ntBASIC1.04□□□□□ -2.24
KLHDC3Q9BQ90 LINC01337-201ENST00000515871 440 ntTSL 3 BASIC1.04□□□□□ -2.24
KLHDC3Q9BQ90 RNU7-28P-201ENST00000516759 62 ntBASIC1.04□□□□□ -2.24
KLHDC3Q9BQ90 RNU6-341P-201ENST00000516973 96 ntBASIC1.04□□□□□ -2.24
KLHDC3Q9BQ90 CYP3A52P-201ENST00000563326 91 ntBASIC1.04□□□□□ -2.24
KLHDC3Q9BQ90 MIR3664-201ENST00000579074 99 ntBASIC1.04□□□□□ -2.24
KLHDC3Q9BQ90 AC091178.2-201ENST00000584401 117 ntBASIC1.04□□□□□ -2.24
KLHDC3Q9BQ90 SNORD3E-202ENST00000627253 216 ntBASIC1.04□□□□□ -2.24
KLHDC3Q9BQ90 PPP2R5A-205ENST00000537030 1719 ntTSL 2 BASIC1.03□□□□□ -2.24
KLHDC3Q9BQ90 RNU6-454P-201ENST00000364292 107 ntBASIC1.03□□□□□ -2.24
KLHDC3Q9BQ90 Y_RNA.338-201ENST00000365320 114 ntBASIC1.03□□□□□ -2.24
KLHDC3Q9BQ90 RNU6-310P-201ENST00000384655 107 ntBASIC1.03□□□□□ -2.24
KLHDC3Q9BQ90 RNU6-376P-201ENST00000384731 106 ntBASIC1.03□□□□□ -2.24
KLHDC3Q9BQ90 RNU6-1156P-201ENST00000410365 100 ntBASIC1.03□□□□□ -2.24
KLHDC3Q9BQ90 RNU6-321P-201ENST00000410912 106 ntBASIC1.03□□□□□ -2.24
KLHDC3Q9BQ90 AC092473.1-201ENST00000441098 221 ntBASIC1.03□□□□□ -2.24
KLHDC3Q9BQ90 AL590422.1-201ENST00000451829 364 ntTSL 3 BASIC1.03□□□□□ -2.24
KLHDC3Q9BQ90 AL353743.2-204ENST00000456242 419 ntTSL 3 BASIC1.03□□□□□ -2.24
KLHDC3Q9BQ90 AC091021.1-201ENST00000468051 388 ntBASIC1.03□□□□□ -2.24
KLHDC3Q9BQ90 AC022493.2-201ENST00000506122 481 ntBASIC1.03□□□□□ -2.24
KLHDC3Q9BQ90 AC108729.3-201ENST00000513484 108 ntBASIC1.03□□□□□ -2.24
KLHDC3Q9BQ90 RNU2-56P-201ENST00000516826 190 ntBASIC1.03□□□□□ -2.24
KLHDC3Q9BQ90 RN7SKP88-201ENST00000516847 250 ntBASIC1.03□□□□□ -2.24
KLHDC3Q9BQ90 SNORA20.3-201ENST00000516880 132 ntBASIC1.03□□□□□ -2.24
KLHDC3Q9BQ90 RNU7-4P-201ENST00000516961 62 ntBASIC1.03□□□□□ -2.24
KLHDC3Q9BQ90 AP003128.1-201ENST00000531414 448 ntTSL 2 BASIC1.03□□□□□ -2.24
KLHDC3Q9BQ90 AP002004.2-201ENST00000531656 154 ntBASIC1.03□□□□□ -2.24
KLHDC3Q9BQ90 AC113139.1-201ENST00000605049 239 ntBASIC1.03□□□□□ -2.24
KLHDC3Q9BQ90 7SK.8-201ENST00000612110 250 ntBASIC1.03□□□□□ -2.24
KLHDC3Q9BQ90 AC025253.1-201ENST00000613623 543 ntBASIC1.03□□□□□ -2.24
KLHDC3Q9BQ90 7SK.11-201ENST00000615477 250 ntBASIC1.03□□□□□ -2.24
KLHDC3Q9BQ90 AC087588.2-201ENST00000617667 426 ntBASIC1.03□□□□□ -2.24
KLHDC3Q9BQ90 7SK.13-201ENST00000622040 250 ntBASIC1.03□□□□□ -2.24
KLHDC3Q9BQ90 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC1.02□□□□□ -2.25
KLHDC3Q9BQ90 Y_RNA.243-201ENST00000364481 109 ntBASIC1.02□□□□□ -2.25
KLHDC3Q9BQ90 RNU4-76P-201ENST00000364509 141 ntBASIC1.02□□□□□ -2.25
KLHDC3Q9BQ90 Y_RNA.265-201ENST00000364677 108 ntBASIC1.02□□□□□ -2.25
KLHDC3Q9BQ90 Y_RNA.474-201ENST00000384341 102 ntBASIC1.02□□□□□ -2.25
KLHDC3Q9BQ90 RNU6-505P-201ENST00000384427 107 ntBASIC1.02□□□□□ -2.25
KLHDC3Q9BQ90 MIR520G-201ENST00000385064 90 ntBASIC1.02□□□□□ -2.25
KLHDC3Q9BQ90 Y_RNA.592-201ENST00000410274 109 ntBASIC1.02□□□□□ -2.25
KLHDC3Q9BQ90 RPL23AP36-201ENST00000413895 458 ntBASIC1.02□□□□□ -2.25
KLHDC3Q9BQ90 AC091812.1-201ENST00000432235 1948 ntBASIC1.02□□□□□ -2.25
KLHDC3Q9BQ90 AC092813.2-201ENST00000434540 399 ntTSL 3 BASIC1.02□□□□□ -2.25
KLHDC3Q9BQ90 AC092991.1-201ENST00000477176 376 ntBASIC1.02□□□□□ -2.25
KLHDC3Q9BQ90 PRDX4P1-201ENST00000507189 574 ntBASIC1.02□□□□□ -2.25
Retrieved 100 of 98,524 protein–RNA pairs in 112 ms