Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 Y_RNA.655-201ENST00000515919 96 ntBASIC1.04□□□□□ -2.24
VPS35Q96QK1 RNU6-341P-201ENST00000516973 96 ntBASIC1.04□□□□□ -2.24
VPS35Q96QK1 AL356133.2-201ENST00000521572 371 ntTSL 3 BASIC1.04□□□□□ -2.24
VPS35Q96QK1 AF235103.2-201ENST00000525753 346 ntBASIC1.04□□□□□ -2.24
VPS35Q96QK1 AC025030.2-201ENST00000552558 567 ntTSL 2 BASIC1.04□□□□□ -2.24
VPS35Q96QK1 AC018448.1-201ENST00000552843 316 ntBASIC1.04□□□□□ -2.24
VPS35Q96QK1 GHRLOS.1-201ENST00000610995 70 ntBASIC1.04□□□□□ -2.24
VPS35Q96QK1 AC002553.4-201ENST00000616896 331 ntBASIC1.04□□□□□ -2.24
VPS35Q96QK1 ZGRF1-202ENST00000309071 3347 ntTSL 1 (best) BASIC1.04□□□□□ -2.24
VPS35Q96QK1 SNORA1B-201ENST00000362535 133 ntBASIC1.03□□□□□ -2.24
VPS35Q96QK1 MIR653-201ENST00000385279 96 ntBASIC1.03□□□□□ -2.24
VPS35Q96QK1 SNORD41-201ENST00000386967 70 ntBASIC1.03□□□□□ -2.24
VPS35Q96QK1 PCNPP5-201ENST00000452246 481 ntBASIC1.03□□□□□ -2.24
VPS35Q96QK1 RPL7P42-201ENST00000481005 679 ntBASIC1.03□□□□□ -2.24
VPS35Q96QK1 OR9P1P-201ENST00000496431 281 ntBASIC1.03□□□□□ -2.24
VPS35Q96QK1 SNORA31.2-201ENST00000516019 134 ntBASIC1.03□□□□□ -2.24
VPS35Q96QK1 SNORD116-28-201ENST00000516123 91 ntBASIC1.03□□□□□ -2.24
VPS35Q96QK1 RN7SKP49-201ENST00000516675 260 ntBASIC1.03□□□□□ -2.24
VPS35Q96QK1 RNU7-28P-201ENST00000516759 62 ntBASIC1.03□□□□□ -2.24
VPS35Q96QK1 AC022868.1-201ENST00000517767 391 ntBASIC1.03□□□□□ -2.24
VPS35Q96QK1 AP002004.2-201ENST00000531656 154 ntBASIC1.03□□□□□ -2.24
VPS35Q96QK1 AC091178.2-201ENST00000584401 117 ntBASIC1.03□□□□□ -2.24
VPS35Q96QK1 MIR4781-201ENST00000585250 76 ntBASIC1.03□□□□□ -2.24
VPS35Q96QK1 HSPE1P19-201ENST00000603327 295 ntBASIC1.03□□□□□ -2.24
VPS35Q96QK1 SNORD114-21-201ENST00000606412 72 ntBASIC1.03□□□□□ -2.24
VPS35Q96QK1 AC007014.2-201ENST00000615581 479 ntBASIC1.03□□□□□ -2.24
VPS35Q96QK1 LINC01068-202ENST00000620874 626 ntTSL 3 BASIC1.03□□□□□ -2.24
VPS35Q96QK1 AC073869.6-201ENST00000640656 341 ntBASIC1.03□□□□□ -2.24
VPS35Q96QK1 CCDC68-202ENST00000432185 4014 ntAPPRIS P1 TSL 1 (best) BASIC1.03□□□□□ -2.24
VPS35Q96QK1 MIR410-201ENST00000362222 80 ntBASIC1.02□□□□□ -2.25
VPS35Q96QK1 Y_RNA.4-201ENST00000362333 112 ntBASIC1.02□□□□□ -2.25
VPS35Q96QK1 RNU6-1187P-201ENST00000364771 110 ntBASIC1.02□□□□□ -2.25
VPS35Q96QK1 Y_RNA.358-201ENST00000365491 99 ntBASIC1.02□□□□□ -2.25
VPS35Q96QK1 LINC00583-201ENST00000381010 387 ntTSL 2 BASIC1.02□□□□□ -2.25
VPS35Q96QK1 Y_RNA.498-201ENST00000384460 102 ntBASIC1.02□□□□□ -2.25
VPS35Q96QK1 AL356010.2-201ENST00000422844 197 ntTSL 3 BASIC1.02□□□□□ -2.25
VPS35Q96QK1 AC092423.1-201ENST00000430165 186 ntBASIC1.02□□□□□ -2.25
VPS35Q96QK1 AL137792.2-201ENST00000443484 235 ntBASIC1.02□□□□□ -2.25
VPS35Q96QK1 AL035634.1-201ENST00000446768 372 ntTSL 2 BASIC1.02□□□□□ -2.25
VPS35Q96QK1 MTND3P10-201ENST00000450967 341 ntBASIC1.02□□□□□ -2.25
VPS35Q96QK1 RNU6-625P-201ENST00000459412 107 ntBASIC1.02□□□□□ -2.25
VPS35Q96QK1 RNU6-1278P-201ENST00000516130 107 ntBASIC1.02□□□□□ -2.25
VPS35Q96QK1 RNU6-917P-201ENST00000516294 104 ntBASIC1.02□□□□□ -2.25
VPS35Q96QK1 SNORA70.22-201ENST00000517160 124 ntBASIC1.02□□□□□ -2.25
VPS35Q96QK1 AP002001.1-203ENST00000534002 267 ntBASIC1.02□□□□□ -2.25
VPS35Q96QK1 AC090049.2-201ENST00000550377 109 ntBASIC1.02□□□□□ -2.25
VPS35Q96QK1 AC032019.2-201ENST00000584916 403 ntTSL 5 BASIC1.02□□□□□ -2.25
VPS35Q96QK1 AC060780.3-201ENST00000589464 80 ntBASIC1.02□□□□□ -2.25
VPS35Q96QK1 U6.115-201ENST00000636045 103 ntBASIC1.02□□□□□ -2.25
VPS35Q96QK1 AC005592.1-201ENST00000566527 1640 ntBASIC1.01□□□□□ -2.25
VPS35Q96QK1 RNU1-124P-201ENST00000363861 145 ntBASIC1.01□□□□□ -2.25
VPS35Q96QK1 Y_RNA.339-201ENST00000365325 102 ntBASIC1.01□□□□□ -2.25
VPS35Q96QK1 Y_RNA.482-201ENST00000384377 111 ntBASIC1.01□□□□□ -2.25
VPS35Q96QK1 MIR873-201ENST00000401120 77 ntBASIC1.01□□□□□ -2.25
VPS35Q96QK1 AC009480.1-201ENST00000402410 412 ntTSL 3 BASIC1.01□□□□□ -2.25
VPS35Q96QK1 AL451046.2-201ENST00000403074 277 ntBASIC1.01□□□□□ -2.25
VPS35Q96QK1 NCKAP5-IT1-201ENST00000416437 554 ntTSL 4 BASIC1.01□□□□□ -2.25
VPS35Q96QK1 PSPC1-AS2-201ENST00000423023 376 ntTSL 3 BASIC1.01□□□□□ -2.25
VPS35Q96QK1 AC108488.2-201ENST00000438485 421 ntAPPRIS P1 TSL 3 BASIC1.01□□□□□ -2.25
VPS35Q96QK1 HSPE1P13-201ENST00000451143 297 ntBASIC1.01□□□□□ -2.25
VPS35Q96QK1 AC009468.2-201ENST00000457372 366 ntTSL 5 BASIC1.01□□□□□ -2.25
VPS35Q96QK1 AC048334.1-201ENST00000477975 159 ntBASIC1.01□□□□□ -2.25
VPS35Q96QK1 RPS23P4-201ENST00000487908 423 ntBASIC1.01□□□□□ -2.25
VPS35Q96QK1 AC069439.1-201ENST00000494739 167 ntBASIC1.01□□□□□ -2.25
VPS35Q96QK1 AC008243.1-201ENST00000504955 389 ntTSL 3 BASIC1.01□□□□□ -2.25
VPS35Q96QK1 SNORA40.9-201ENST00000515895 93 ntBASIC1.01□□□□□ -2.25
VPS35Q96QK1 SNORA31.4-201ENST00000516049 129 ntBASIC1.01□□□□□ -2.25
VPS35Q96QK1 RNU6-1291P-201ENST00000516591 104 ntBASIC1.01□□□□□ -2.25
VPS35Q96QK1 AP003174.2-201ENST00000544663 294 ntTSL 3 BASIC1.01□□□□□ -2.25
VPS35Q96QK1 MIR3674-201ENST00000636576 68 ntBASIC1.01□□□□□ -2.25
VPS35Q96QK1 RNU4-79P-201ENST00000362764 141 ntBASIC1□□□□□ -2.25
VPS35Q96QK1 Y_RNA.124-201ENST00000363339 93 ntBASIC1□□□□□ -2.25
VPS35Q96QK1 RNU4-38P-201ENST00000364472 129 ntBASIC1□□□□□ -2.25
VPS35Q96QK1 Y_RNA.404-201ENST00000383978 102 ntBASIC1□□□□□ -2.25
VPS35Q96QK1 RNU6-1080P-201ENST00000383982 107 ntBASIC1□□□□□ -2.25
VPS35Q96QK1 RNU6-318P-201ENST00000384283 103 ntBASIC1□□□□□ -2.25
VPS35Q96QK1 RNU6-910P-201ENST00000390844 107 ntBASIC1□□□□□ -2.25
VPS35Q96QK1 RNA5SP482-201ENST00000391269 118 ntBASIC1□□□□□ -2.25
VPS35Q96QK1 AC093850.1-201ENST00000454121 251 ntBASIC1□□□□□ -2.25
VPS35Q96QK1 AC111194.2-201ENST00000511222 455 ntTSL 5 BASIC1□□□□□ -2.25
VPS35Q96QK1 LINC02061-201ENST00000514225 335 ntTSL 3 BASIC1□□□□□ -2.25
VPS35Q96QK1 RNU6-322P-201ENST00000516010 103 ntBASIC1□□□□□ -2.25
VPS35Q96QK1 AC080078.2-201ENST00000603766 501 ntBASIC1□□□□□ -2.25
VPS35Q96QK1 AC103810.9-201ENST00000606688 112 ntBASIC1□□□□□ -2.25
VPS35Q96QK1 PISRT1.1-201ENST00000616930 107 ntBASIC1□□□□□ -2.25
VPS35Q96QK1 Y_RNA.72-201ENST00000362894 103 ntBASIC0.99□□□□□ -2.25
VPS35Q96QK1 Y_RNA.88-201ENST00000363029 99 ntBASIC0.99□□□□□ -2.25
VPS35Q96QK1 RNU6-454P-201ENST00000364292 107 ntBASIC0.99□□□□□ -2.25
VPS35Q96QK1 RNU6-1054P-201ENST00000411293 104 ntBASIC0.99□□□□□ -2.25
VPS35Q96QK1 RNU7-12P-201ENST00000516030 62 ntBASIC0.99□□□□□ -2.25
VPS35Q96QK1 SCARNA16.2-201ENST00000516520 172 ntBASIC0.99□□□□□ -2.25
VPS35Q96QK1 AC100807.1-201ENST00000517640 552 ntTSL 5 BASIC0.99□□□□□ -2.25
VPS35Q96QK1 AC005899.2-201ENST00000584353 90 ntBASIC0.99□□□□□ -2.25
VPS35Q96QK1 AC011712.1-201ENST00000588959 234 ntBASIC0.99□□□□□ -2.25
VPS35Q96QK1 AC005828.6-201ENST00000606610 232 ntBASIC0.99□□□□□ -2.25
VPS35Q96QK1 AC092794.2-201ENST00000620933 563 ntBASIC0.99□□□□□ -2.25
VPS35Q96QK1 AC127459.3-201ENST00000624328 466 ntBASIC0.99□□□□□ -2.25
VPS35Q96QK1 PPP2R5A-205ENST00000537030 1719 ntTSL 2 BASIC0.98□□□□□ -2.25
VPS35Q96QK1 RNU6-117P-201ENST00000365415 107 ntBASIC0.98□□□□□ -2.25
VPS35Q96QK1 SNORA2.2-201ENST00000365473 135 ntBASIC0.98□□□□□ -2.25
Retrieved 100 of 98,524 protein–RNA pairs in 945.8 ms