Protein–RNA interactions for Protein: Q96MR9

ZNF560, Zinc finger protein 560, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF560Q96MR9 PSPC1-AS2-201ENST00000423023 376 ntTSL 3 BASIC1.17□□□□□ -2.22
ZNF560Q96MR9 AC018865.2-201ENST00000423631 129 ntBASIC1.17□□□□□ -2.22
ZNF560Q96MR9 MTND1P4-201ENST00000435196 415 ntBASIC1.17□□□□□ -2.22
ZNF560Q96MR9 U8.22-201ENST00000459141 133 ntBASIC1.17□□□□□ -2.22
ZNF560Q96MR9 RPL7P42-201ENST00000481005 679 ntBASIC1.17□□□□□ -2.22
ZNF560Q96MR9 AL133373.1-201ENST00000497098 94 ntBASIC1.17□□□□□ -2.22
ZNF560Q96MR9 MIR2355-201ENST00000517199 87 ntBASIC1.17□□□□□ -2.22
ZNF560Q96MR9 AC025580.2-205ENST00000559960 552 ntTSL 4 BASIC1.17□□□□□ -2.22
ZNF560Q96MR9 AC138625.2-201ENST00000563968 551 ntTSL 3 BASIC1.17□□□□□ -2.22
ZNF560Q96MR9 AC068790.6-201ENST00000602558 258 ntBASIC1.17□□□□□ -2.22
ZNF560Q96MR9 AC005828.6-201ENST00000606610 232 ntBASIC1.17□□□□□ -2.22
ZNF560Q96MR9 MIR8070-201ENST00000616510 88 ntBASIC1.17□□□□□ -2.22
ZNF560Q96MR9 AC092794.2-201ENST00000620933 563 ntBASIC1.17□□□□□ -2.22
ZNF560Q96MR9 U6.115-201ENST00000636045 103 ntBASIC1.17□□□□□ -2.22
ZNF560Q96MR9 AC068647.2-201ENST00000637380 353 ntBASIC1.17□□□□□ -2.22
ZNF560Q96MR9 GNPDA2-204ENST00000509756 5382 ntAPPRIS ALT1 TSL 1 (best) BASIC1.17□□□□□ -2.22
ZNF560Q96MR9 CEP162-202ENST00000403245 5156 ntAPPRIS P1 TSL 5 BASIC1.16□□□□□ -2.22
ZNF560Q96MR9 SNORD114-7-201ENST00000362520 77 ntBASIC1.16□□□□□ -2.22
ZNF560Q96MR9 RNU6-199P-201ENST00000362954 107 ntBASIC1.16□□□□□ -2.22
ZNF560Q96MR9 RNU6-407P-201ENST00000365280 104 ntBASIC1.16□□□□□ -2.22
ZNF560Q96MR9 Y_RNA.358-201ENST00000365491 99 ntBASIC1.16□□□□□ -2.22
ZNF560Q96MR9 Y_RNA.404-201ENST00000383978 102 ntBASIC1.16□□□□□ -2.22
ZNF560Q96MR9 SNORA70.7-201ENST00000384159 133 ntBASIC1.16□□□□□ -2.22
ZNF560Q96MR9 RNA5SP475-201ENST00000410568 110 ntBASIC1.16□□□□□ -2.22
ZNF560Q96MR9 RAB28P5-201ENST00000427490 651 ntBASIC1.16□□□□□ -2.22
ZNF560Q96MR9 AL137792.2-201ENST00000443484 235 ntBASIC1.16□□□□□ -2.22
ZNF560Q96MR9 AC091021.1-201ENST00000468051 388 ntBASIC1.16□□□□□ -2.22
ZNF560Q96MR9 RPL17P19-201ENST00000489069 552 ntBASIC1.16□□□□□ -2.22
ZNF560Q96MR9 AC008243.1-201ENST00000504955 389 ntTSL 3 BASIC1.16□□□□□ -2.22
ZNF560Q96MR9 RNU6-1278P-201ENST00000516130 107 ntBASIC1.16□□□□□ -2.22
ZNF560Q96MR9 RNA5SP168-201ENST00000516642 112 ntBASIC1.16□□□□□ -2.22
ZNF560Q96MR9 AC022868.1-201ENST00000517767 391 ntBASIC1.16□□□□□ -2.22
ZNF560Q96MR9 AL356133.2-201ENST00000521572 371 ntTSL 3 BASIC1.16□□□□□ -2.22
ZNF560Q96MR9 AP002004.2-201ENST00000531656 154 ntBASIC1.16□□□□□ -2.22
ZNF560Q96MR9 GHRLOS.1-201ENST00000610995 70 ntBASIC1.16□□□□□ -2.22
ZNF560Q96MR9 Z84484.1-202ENST00000612718 60 ntTSL 5 BASIC1.16□□□□□ -2.22
ZNF560Q96MR9 AC106754.2-201ENST00000623006 233 ntBASIC1.16□□□□□ -2.22
ZNF560Q96MR9 MIR3674-201ENST00000636576 68 ntBASIC1.16□□□□□ -2.22
ZNF560Q96MR9 AC027514.1-201ENST00000588561 1603 ntBASIC1.15□□□□□ -2.22
ZNF560Q96MR9 RNU6-318P-201ENST00000384283 103 ntBASIC1.15□□□□□ -2.23
ZNF560Q96MR9 RNU6-424P-201ENST00000384367 105 ntBASIC1.15□□□□□ -2.23
ZNF560Q96MR9 SNORA25-201ENST00000384384 134 ntBASIC1.15□□□□□ -2.23
ZNF560Q96MR9 SNORA75.4-201ENST00000391278 119 ntBASIC1.15□□□□□ -2.23
ZNF560Q96MR9 OPRPN-201ENST00000399575 1040 ntAPPRIS P1 TSL 1 (best) BASIC1.15□□□□□ -2.23
ZNF560Q96MR9 MIR873-201ENST00000401120 77 ntBASIC1.15□□□□□ -2.23
ZNF560Q96MR9 MRPL35P3-201ENST00000421557 364 ntBASIC1.15□□□□□ -2.23
ZNF560Q96MR9 AC006159.2-201ENST00000421965 692 ntTSL 2 BASIC1.15□□□□□ -2.23
ZNF560Q96MR9 AC092423.1-201ENST00000430165 186 ntBASIC1.15□□□□□ -2.23
ZNF560Q96MR9 RNU6-625P-201ENST00000459412 107 ntBASIC1.15□□□□□ -2.23
ZNF560Q96MR9 OR9P1P-201ENST00000496431 281 ntBASIC1.15□□□□□ -2.23
ZNF560Q96MR9 SNORD116-28-201ENST00000516123 91 ntBASIC1.15□□□□□ -2.23
ZNF560Q96MR9 RNU2-56P-201ENST00000516826 190 ntBASIC1.15□□□□□ -2.23
ZNF560Q96MR9 RNU7-30P-201ENST00000516835 62 ntBASIC1.15□□□□□ -2.23
ZNF560Q96MR9 RNA5SP404-201ENST00000517118 132 ntBASIC1.15□□□□□ -2.23
ZNF560Q96MR9 RNU6-767P-201ENST00000384132 107 ntBASIC1.14□□□□□ -2.23
ZNF560Q96MR9 RNU6-1310P-201ENST00000384153 107 ntBASIC1.14□□□□□ -2.23
ZNF560Q96MR9 RNU6-376P-201ENST00000384731 106 ntBASIC1.14□□□□□ -2.23
ZNF560Q96MR9 RNA5SP482-201ENST00000391269 118 ntBASIC1.14□□□□□ -2.23
ZNF560Q96MR9 SNORA40.9-201ENST00000515895 93 ntBASIC1.14□□□□□ -2.23
ZNF560Q96MR9 RNA5SP102-201ENST00000516865 106 ntBASIC1.14□□□□□ -2.23
ZNF560Q96MR9 AL358944.1-201ENST00000528537 144 ntBASIC1.14□□□□□ -2.23
ZNF560Q96MR9 AC090049.2-201ENST00000550377 109 ntBASIC1.14□□□□□ -2.23
ZNF560Q96MR9 MIR4778-201ENST00000577635 80 ntBASIC1.14□□□□□ -2.23
ZNF560Q96MR9 AL022345.2-201ENST00000606307 135 ntBASIC1.14□□□□□ -2.23
ZNF560Q96MR9 LINC01068-202ENST00000620874 626 ntTSL 3 BASIC1.14□□□□□ -2.23
ZNF560Q96MR9 AC027335.2-201ENST00000624030 375 ntBASIC1.14□□□□□ -2.23
ZNF560Q96MR9 AC139792.2-201ENST00000624218 587 ntBASIC1.14□□□□□ -2.23
ZNF560Q96MR9 AC127459.3-201ENST00000624328 466 ntBASIC1.14□□□□□ -2.23
ZNF560Q96MR9 PPP2R5A-205ENST00000537030 1719 ntTSL 2 BASIC1.14□□□□□ -2.23
ZNF560Q96MR9 CEP290-201ENST00000309041 7616 ntAPPRIS ALT1 TSL 5 BASIC1.14□□□□□ -2.23
ZNF560Q96MR9 IL6ST-203ENST00000381287 8667 ntTSL 5 BASIC1.13□□□□□ -2.23
ZNF560Q96MR9 RNU6-454P-201ENST00000364292 107 ntBASIC1.13□□□□□ -2.23
ZNF560Q96MR9 Y_RNA.267-201ENST00000364679 109 ntBASIC1.13□□□□□ -2.23
ZNF560Q96MR9 RNU6-117P-201ENST00000365415 107 ntBASIC1.13□□□□□ -2.23
ZNF560Q96MR9 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC1.13□□□□□ -2.23
ZNF560Q96MR9 RNU6-192P-201ENST00000391253 100 ntBASIC1.13□□□□□ -2.23
ZNF560Q96MR9 U8.16-201ENST00000391279 133 ntBASIC1.13□□□□□ -2.23
ZNF560Q96MR9 RNU5A-5P-201ENST00000411054 116 ntBASIC1.13□□□□□ -2.23
ZNF560Q96MR9 RNU6-1054P-201ENST00000411293 104 ntBASIC1.13□□□□□ -2.23
ZNF560Q96MR9 CALM2P4-201ENST00000430810 426 ntBASIC1.13□□□□□ -2.23
ZNF560Q96MR9 DYNLT3P2-201ENST00000442517 295 ntBASIC1.13□□□□□ -2.23
ZNF560Q96MR9 RPS23P4-201ENST00000487908 423 ntBASIC1.13□□□□□ -2.23
ZNF560Q96MR9 AC111194.2-201ENST00000511222 455 ntTSL 5 BASIC1.13□□□□□ -2.23
ZNF560Q96MR9 RNU7-40P-201ENST00000516397 64 ntBASIC1.13□□□□□ -2.23
ZNF560Q96MR9 SCARNA16.2-201ENST00000516520 172 ntBASIC1.13□□□□□ -2.23
ZNF560Q96MR9 RNU6-922P-201ENST00000516753 99 ntBASIC1.13□□□□□ -2.23
ZNF560Q96MR9 AP002001.1-203ENST00000534002 267 ntBASIC1.13□□□□□ -2.23
ZNF560Q96MR9 BX284668.6-201ENST00000606899 438 ntBASIC1.13□□□□□ -2.23
ZNF560Q96MR9 AC084782.3-201ENST00000612282 578 ntBASIC1.13□□□□□ -2.23
ZNF560Q96MR9 SNORA1B-201ENST00000362535 133 ntBASIC1.12□□□□□ -2.23
ZNF560Q96MR9 RNU1-124P-201ENST00000363861 145 ntBASIC1.12□□□□□ -2.23
ZNF560Q96MR9 Y_RNA.243-201ENST00000364481 109 ntBASIC1.12□□□□□ -2.23
ZNF560Q96MR9 SNORA2.2-201ENST00000365473 135 ntBASIC1.12□□□□□ -2.23
ZNF560Q96MR9 MIR520G-201ENST00000385064 90 ntBASIC1.12□□□□□ -2.23
ZNF560Q96MR9 RPL23AP50-201ENST00000434149 455 ntBASIC1.12□□□□□ -2.23
ZNF560Q96MR9 AL590422.1-201ENST00000451829 364 ntTSL 3 BASIC1.12□□□□□ -2.23
ZNF560Q96MR9 AC080078.2-201ENST00000603766 501 ntBASIC1.12□□□□□ -2.23
ZNF560Q96MR9 SENP7-207ENST00000394095 4945 ntAPPRIS P3 TSL 1 (best) BASIC1.11□□□□□ -2.23
ZNF560Q96MR9 RNU6-845P-201ENST00000362578 103 ntBASIC1.11□□□□□ -2.23
ZNF560Q96MR9 RNU6-1301P-201ENST00000362724 104 ntBASIC1.11□□□□□ -2.23
Retrieved 100 of 98,524 protein–RNA pairs in 115.2 ms