Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 RNU7-172P-201ENST00000517125 64 ntBASIC0.98□□□□□ -2.25
CCDC54Q8NEL0 AC090124.1-201ENST00000525097 448 ntTSL 3 BASIC0.98□□□□□ -2.25
CCDC54Q8NEL0 MIR4778-201ENST00000577635 80 ntBASIC0.98□□□□□ -2.25
CCDC54Q8NEL0 HSPE1P19-201ENST00000603327 295 ntBASIC0.98□□□□□ -2.25
CCDC54Q8NEL0 AL353770.2-201ENST00000620024 78 ntBASIC0.98□□□□□ -2.25
CCDC54Q8NEL0 AC138305.3-201ENST00000624988 240 ntBASIC0.98□□□□□ -2.25
CCDC54Q8NEL0 AC068647.2-201ENST00000637380 353 ntBASIC0.98□□□□□ -2.25
CCDC54Q8NEL0 SNORA1B-201ENST00000362535 133 ntBASIC0.97□□□□□ -2.25
CCDC54Q8NEL0 Y_RNA.243-201ENST00000364481 109 ntBASIC0.97□□□□□ -2.25
CCDC54Q8NEL0 RNU6-890P-201ENST00000384121 107 ntBASIC0.97□□□□□ -2.25
CCDC54Q8NEL0 MIR660-201ENST00000385235 97 ntBASIC0.97□□□□□ -2.25
CCDC54Q8NEL0 RN7SKP200-201ENST00000410564 320 ntBASIC0.97□□□□□ -2.25
CCDC54Q8NEL0 MTCO3P19-201ENST00000415864 321 ntBASIC0.97□□□□□ -2.25
CCDC54Q8NEL0 SNX2P2-201ENST00000424553 323 ntBASIC0.97□□□□□ -2.25
CCDC54Q8NEL0 STAG3L5P-204ENST00000443759 179 ntBASIC0.97□□□□□ -2.25
CCDC54Q8NEL0 RPL39P38-201ENST00000467018 153 ntBASIC0.97□□□□□ -2.25
CCDC54Q8NEL0 AC074133.1-201ENST00000515696 183 ntBASIC0.97□□□□□ -2.25
CCDC54Q8NEL0 LINC01337-201ENST00000515871 440 ntTSL 3 BASIC0.97□□□□□ -2.25
CCDC54Q8NEL0 RNU6-277P-201ENST00000516272 106 ntBASIC0.97□□□□□ -2.25
CCDC54Q8NEL0 RNU6-917P-201ENST00000516294 104 ntBASIC0.97□□□□□ -2.25
CCDC54Q8NEL0 RNA5SP168-201ENST00000516642 112 ntBASIC0.97□□□□□ -2.25
CCDC54Q8NEL0 SNORA20.3-201ENST00000516880 132 ntBASIC0.97□□□□□ -2.25
CCDC54Q8NEL0 hsa-mir-3119-1.1-201ENST00000577602 85 ntBASIC0.97□□□□□ -2.25
CCDC54Q8NEL0 RNU6-1266P-201ENST00000362794 105 ntBASIC0.96□□□□□ -2.26
CCDC54Q8NEL0 Y_RNA.172-201ENST00000363765 102 ntBASIC0.96□□□□□ -2.26
CCDC54Q8NEL0 RNU6-407P-201ENST00000365280 104 ntBASIC0.96□□□□□ -2.26
CCDC54Q8NEL0 RNU6-708P-201ENST00000384217 107 ntBASIC0.96□□□□□ -2.26
CCDC54Q8NEL0 RNU6-424P-201ENST00000384367 105 ntBASIC0.96□□□□□ -2.26
CCDC54Q8NEL0 SNORD116-29-201ENST00000384516 83 ntBASIC0.96□□□□□ -2.26
CCDC54Q8NEL0 SNORA75.6-201ENST00000391318 127 ntBASIC0.96□□□□□ -2.26
CCDC54Q8NEL0 SNORD12B-201ENST00000410433 91 ntBASIC0.96□□□□□ -2.26
CCDC54Q8NEL0 AC138393.2-201ENST00000414742 246 ntBASIC0.96□□□□□ -2.26
CCDC54Q8NEL0 LINC01870-201ENST00000427042 390 ntTSL 3 BASIC0.96□□□□□ -2.26
CCDC54Q8NEL0 Z98949.2-201ENST00000440996 144 ntBASIC0.96□□□□□ -2.26
CCDC54Q8NEL0 AC093850.1-201ENST00000454121 251 ntBASIC0.96□□□□□ -2.26
CCDC54Q8NEL0 snoU13.23-201ENST00000458863 104 ntBASIC0.96□□□□□ -2.26
CCDC54Q8NEL0 snoU13.25-201ENST00000458945 104 ntBASIC0.96□□□□□ -2.26
CCDC54Q8NEL0 RNU7-95P-201ENST00000459222 64 ntBASIC0.96□□□□□ -2.26
CCDC54Q8NEL0 RNU6-625P-201ENST00000459412 107 ntBASIC0.96□□□□□ -2.26
CCDC54Q8NEL0 AC105758.1-201ENST00000506038 399 ntBASIC0.96□□□□□ -2.26
CCDC54Q8NEL0 RNU6-1291P-201ENST00000516591 104 ntBASIC0.96□□□□□ -2.26
CCDC54Q8NEL0 RNU2-12P-201ENST00000517216 168 ntBASIC0.96□□□□□ -2.26
CCDC54Q8NEL0 RNU6-1116P-201ENST00000517269 99 ntBASIC0.96□□□□□ -2.26
CCDC54Q8NEL0 AL513423.1-201ENST00000621695 132 ntBASIC0.96□□□□□ -2.26
CCDC54Q8NEL0 EYS-205ENST00000393380 5450 ntTSL 1 (best) BASIC0.95□□□□□ -2.26
CCDC54Q8NEL0 Y_RNA.101-201ENST00000363154 102 ntBASIC0.95□□□□□ -2.26
CCDC54Q8NEL0 RNU5F-3P-201ENST00000363767 117 ntBASIC0.95□□□□□ -2.26
CCDC54Q8NEL0 SNORD115-30-201ENST00000364117 82 ntBASIC0.95□□□□□ -2.26
CCDC54Q8NEL0 MIR559-201ENST00000385188 96 ntBASIC0.95□□□□□ -2.26
CCDC54Q8NEL0 SNORA11.2-201ENST00000408318 127 ntBASIC0.95□□□□□ -2.26
CCDC54Q8NEL0 RNU6ATAC25P-201ENST00000408798 117 ntBASIC0.95□□□□□ -2.26
CCDC54Q8NEL0 Y_RNA.592-201ENST00000410274 109 ntBASIC0.95□□□□□ -2.26
CCDC54Q8NEL0 RNU6-1199P-201ENST00000411249 104 ntBASIC0.95□□□□□ -2.26
CCDC54Q8NEL0 AC035139.1-201ENST00000423256 273 ntTSL 3 BASIC0.95□□□□□ -2.26
CCDC54Q8NEL0 AP000235.1-201ENST00000424017 479 ntTSL 3 BASIC0.95□□□□□ -2.26
CCDC54Q8NEL0 LINC00448-201ENST00000438352 402 ntTSL 3 BASIC0.95□□□□□ -2.26
CCDC54Q8NEL0 AC022493.2-201ENST00000506122 481 ntBASIC0.95□□□□□ -2.26
CCDC54Q8NEL0 AP003128.1-201ENST00000531414 448 ntTSL 2 BASIC0.95□□□□□ -2.26
CCDC54Q8NEL0 CR383656.11-201ENST00000552261 498 ntTSL 3 BASIC0.95□□□□□ -2.26
CCDC54Q8NEL0 U6atac.1-201ENST00000616025 117 ntBASIC0.95□□□□□ -2.26
CCDC54Q8NEL0 AC073349.3-201ENST00000617616 186 ntBASIC0.95□□□□□ -2.26
CCDC54Q8NEL0 5S_rRNA.13-201ENST00000622298 123 ntBASIC0.95□□□□□ -2.26
CCDC54Q8NEL0 SNORD3E-202ENST00000627253 216 ntBASIC0.95□□□□□ -2.26
CCDC54Q8NEL0 MIR3674-201ENST00000636576 68 ntBASIC0.95□□□□□ -2.26
CCDC54Q8NEL0 Y_RNA.303-201ENST00000364998 94 ntBASIC0.94□□□□□ -2.26
CCDC54Q8NEL0 Y_RNA.363-201ENST00000365529 113 ntBASIC0.94□□□□□ -2.26
CCDC54Q8NEL0 Y_RNA.498-201ENST00000384460 102 ntBASIC0.94□□□□□ -2.26
CCDC54Q8NEL0 RNU6-136P-201ENST00000384663 107 ntBASIC0.94□□□□□ -2.26
CCDC54Q8NEL0 MIR653-201ENST00000385279 96 ntBASIC0.94□□□□□ -2.26
CCDC54Q8NEL0 RNU4-62P-201ENST00000410125 130 ntBASIC0.94□□□□□ -2.26
CCDC54Q8NEL0 RNU6-1156P-201ENST00000410365 100 ntBASIC0.94□□□□□ -2.26
CCDC54Q8NEL0 RNU6-408P-201ENST00000515910 100 ntBASIC0.94□□□□□ -2.26
CCDC54Q8NEL0 RNU6-922P-201ENST00000516753 99 ntBASIC0.94□□□□□ -2.26
CCDC54Q8NEL0 RNU6-341P-201ENST00000516973 96 ntBASIC0.94□□□□□ -2.26
CCDC54Q8NEL0 AC087518.1-201ENST00000524098 187 ntTSL 3 BASIC0.94□□□□□ -2.26
CCDC54Q8NEL0 AL117336.2-201ENST00000602435 335 ntBASIC0.94□□□□□ -2.26
CCDC54Q8NEL0 AC103810.9-201ENST00000606688 112 ntBASIC0.94□□□□□ -2.26
CCDC54Q8NEL0 AL355073.2-201ENST00000612106 557 ntBASIC0.94□□□□□ -2.26
CCDC54Q8NEL0 WT1-AS_8.1-201ENST00000615200 275 ntBASIC0.94□□□□□ -2.26
CCDC54Q8NEL0 AC084781.2-201ENST00000615568 161 ntBASIC0.94□□□□□ -2.26
CCDC54Q8NEL0 PISRT1.1-201ENST00000616930 107 ntBASIC0.94□□□□□ -2.26
CCDC54Q8NEL0 ZNF518A-210ENST00000624776 7994 ntAPPRIS P1 TSL 1 (best) BASIC0.94□□□□□ -2.26
CCDC54Q8NEL0 PPP2R5A-205ENST00000537030 1719 ntTSL 2 BASIC0.93□□□□□ -2.26
CCDC54Q8NEL0 RNU4-41P-201ENST00000364426 143 ntBASIC0.93□□□□□ -2.26
CCDC54Q8NEL0 Y_RNA.267-201ENST00000364679 109 ntBASIC0.93□□□□□ -2.26
CCDC54Q8NEL0 MIR873-201ENST00000401120 77 ntBASIC0.93□□□□□ -2.26
CCDC54Q8NEL0 AL034345.1-201ENST00000407768 123 ntBASIC0.93□□□□□ -2.26
CCDC54Q8NEL0 RPL23AP36-201ENST00000413895 458 ntBASIC0.93□□□□□ -2.26
CCDC54Q8NEL0 LINC00428-201ENST00000415620 227 ntTSL 5 BASIC0.93□□□□□ -2.26
CCDC54Q8NEL0 AL353747.2-201ENST00000439207 205 ntTSL 3 BASIC0.93□□□□□ -2.26
CCDC54Q8NEL0 RPEP5-201ENST00000441137 268 ntBASIC0.93□□□□□ -2.26
CCDC54Q8NEL0 AL844175.1-201ENST00000455153 323 ntTSL 5 BASIC0.93□□□□□ -2.26
CCDC54Q8NEL0 Y_RNA.635-201ENST00000459041 101 ntBASIC0.93□□□□□ -2.26
CCDC54Q8NEL0 MIR2053-201ENST00000459295 91 ntBASIC0.93□□□□□ -2.26
CCDC54Q8NEL0 AL049830.1-201ENST00000468034 425 ntBASIC0.93□□□□□ -2.26
CCDC54Q8NEL0 AC108210.2-201ENST00000503681 201 ntBASIC0.93□□□□□ -2.26
CCDC54Q8NEL0 SNORA25.10-201ENST00000515926 124 ntBASIC0.93□□□□□ -2.26
CCDC54Q8NEL0 RN7SKP88-201ENST00000516847 250 ntBASIC0.93□□□□□ -2.26
CCDC54Q8NEL0 CYCSP23-201ENST00000519781 313 ntBASIC0.93□□□□□ -2.26
CCDC54Q8NEL0 AC023442.1-201ENST00000531247 422 ntBASIC0.93□□□□□ -2.26
Retrieved 100 of 98,524 protein–RNA pairs in 130.9 ms