Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 Y_RNA.303-201ENST00000364998 94 ntBASIC1.14□□□□□ -2.23
SKA3Q8IX90 Y_RNA.387-201ENST00000383918 102 ntBASIC1.14□□□□□ -2.23
SKA3Q8IX90 SNORD116-29-201ENST00000384516 83 ntBASIC1.14□□□□□ -2.23
SKA3Q8IX90 SNORA12.1-201ENST00000390873 148 ntBASIC1.14□□□□□ -2.23
SKA3Q8IX90 RNU6-440P-201ENST00000390882 105 ntBASIC1.14□□□□□ -2.23
SKA3Q8IX90 MTCO3P19-201ENST00000415864 321 ntBASIC1.14□□□□□ -2.23
SKA3Q8IX90 LINC01073-201ENST00000441659 149 ntTSL 3 BASIC1.14□□□□□ -2.23
SKA3Q8IX90 RNU7-169P-201ENST00000459456 61 ntBASIC1.14□□□□□ -2.23
SKA3Q8IX90 AC097501.2-201ENST00000502668 305 ntTSL 5 BASIC1.14□□□□□ -2.23
SKA3Q8IX90 RNA5SP20-201ENST00000515976 84 ntBASIC1.14□□□□□ -2.23
SKA3Q8IX90 RNU7-4P-201ENST00000516961 62 ntBASIC1.14□□□□□ -2.23
SKA3Q8IX90 RNU6-902P-201ENST00000517212 91 ntBASIC1.14□□□□□ -2.23
SKA3Q8IX90 MIR3684-201ENST00000579779 74 ntBASIC1.14□□□□□ -2.23
SKA3Q8IX90 RBM11P1-201ENST00000604951 799 ntBASIC1.14□□□□□ -2.23
SKA3Q8IX90 AL365434.2-201ENST00000607979 234 ntBASIC1.14□□□□□ -2.23
SKA3Q8IX90 AL132765.2-201ENST00000610812 351 ntBASIC1.14□□□□□ -2.23
SKA3Q8IX90 U6.115-201ENST00000636045 103 ntBASIC1.14□□□□□ -2.23
SKA3Q8IX90 MCMDC2-207ENST00000492775 1831 ntTSL 1 (best) BASIC1.14□□□□□ -2.23
SKA3Q8IX90 SNORD33-201ENST00000362761 85 ntBASIC1.13□□□□□ -2.23
SKA3Q8IX90 RNU6-926P-201ENST00000384075 107 ntBASIC1.13□□□□□ -2.23
SKA3Q8IX90 RNU6-376P-201ENST00000384731 106 ntBASIC1.13□□□□□ -2.23
SKA3Q8IX90 MIR559-201ENST00000385188 96 ntBASIC1.13□□□□□ -2.23
SKA3Q8IX90 MIR628-201ENST00000385229 95 ntBASIC1.13□□□□□ -2.23
SKA3Q8IX90 ZNF468-202ENST00000396409 384 ntTSL 5 BASIC1.13□□□□□ -2.23
SKA3Q8IX90 RNA5SP475-201ENST00000410568 110 ntBASIC1.13□□□□□ -2.23
SKA3Q8IX90 AL135790.2-201ENST00000437701 267 ntBASIC1.13□□□□□ -2.23
SKA3Q8IX90 STAG3L5P-204ENST00000443759 179 ntBASIC1.13□□□□□ -2.23
SKA3Q8IX90 AL590422.1-201ENST00000451829 364 ntTSL 3 BASIC1.13□□□□□ -2.23
SKA3Q8IX90 ELOCP24-201ENST00000456370 334 ntBASIC1.13□□□□□ -2.23
SKA3Q8IX90 CFLAR-AS1-202ENST00000474886 223 ntTSL 3 BASIC1.13□□□□□ -2.23
SKA3Q8IX90 AC004223.1-201ENST00000479840 271 ntBASIC1.13□□□□□ -2.23
SKA3Q8IX90 RNU6-470P-201ENST00000515954 104 ntBASIC1.13□□□□□ -2.23
SKA3Q8IX90 NKAIN2-205ENST00000546092 148 ntTSL 5 BASIC1.13□□□□□ -2.23
SKA3Q8IX90 AC068338.1-201ENST00000565567 176 ntBASIC1.13□□□□□ -2.23
SKA3Q8IX90 AL121890.5-201ENST00000620848 304 ntBASIC1.13□□□□□ -2.23
SKA3Q8IX90 MIR6079-201ENST00000635807 62 ntBASIC1.13□□□□□ -2.23
SKA3Q8IX90 IL6ST-203ENST00000381287 8667 ntTSL 5 BASIC1.13□□□□□ -2.23
SKA3Q8IX90 Y_RNA.124-201ENST00000363339 93 ntBASIC1.12□□□□□ -2.23
SKA3Q8IX90 Y_RNA.314-201ENST00000365114 102 ntBASIC1.12□□□□□ -2.23
SKA3Q8IX90 RNA5SP259-201ENST00000365541 109 ntBASIC1.12□□□□□ -2.23
SKA3Q8IX90 LINC00583-201ENST00000381010 387 ntTSL 2 BASIC1.12□□□□□ -2.23
SKA3Q8IX90 Y_RNA.384-201ENST00000383909 102 ntBASIC1.12□□□□□ -2.23
SKA3Q8IX90 RNU6-1065P-201ENST00000384513 106 ntBASIC1.12□□□□□ -2.23
SKA3Q8IX90 MIR873-201ENST00000401120 77 ntBASIC1.12□□□□□ -2.23
SKA3Q8IX90 PGBD4P5-201ENST00000445958 426 ntBASIC1.12□□□□□ -2.23
SKA3Q8IX90 AC091021.1-201ENST00000468051 388 ntBASIC1.12□□□□□ -2.23
SKA3Q8IX90 RNU6-237P-201ENST00000515985 71 ntBASIC1.12□□□□□ -2.23
SKA3Q8IX90 RNA5SP458-201ENST00000516188 119 ntBASIC1.12□□□□□ -2.23
SKA3Q8IX90 AL356133.2-201ENST00000521572 371 ntTSL 3 BASIC1.12□□□□□ -2.23
SKA3Q8IX90 AC087518.1-201ENST00000524098 187 ntTSL 3 BASIC1.12□□□□□ -2.23
SKA3Q8IX90 AL355375.2-201ENST00000574825 175 ntBASIC1.12□□□□□ -2.23
SKA3Q8IX90 MIR4801-201ENST00000582704 82 ntBASIC1.12□□□□□ -2.23
SKA3Q8IX90 AL021879.1-201ENST00000611756 288 ntBASIC1.12□□□□□ -2.23
SKA3Q8IX90 TDRD15-202ENST00000622654 5805 ntAPPRIS P1 BASIC1.12□□□□□ -2.23
SKA3Q8IX90 JMJD1C-212ENST00000639129 7901 ntAPPRIS ALT2 TSL 5 BASIC1.12□□□□□ -2.23
SKA3Q8IX90 RNU6-961P-201ENST00000363893 105 ntBASIC1.11□□□□□ -2.23
SKA3Q8IX90 RNU6-1040P-201ENST00000383974 107 ntBASIC1.11□□□□□ -2.23
SKA3Q8IX90 RNY3P4-201ENST00000384428 101 ntBASIC1.11□□□□□ -2.23
SKA3Q8IX90 SNORA40.6-201ENST00000391153 128 ntBASIC1.11□□□□□ -2.23
SKA3Q8IX90 AL034345.1-201ENST00000407768 123 ntBASIC1.11□□□□□ -2.23
SKA3Q8IX90 Y_RNA.605-201ENST00000410577 105 ntBASIC1.11□□□□□ -2.23
SKA3Q8IX90 PSPC1-AS2-201ENST00000423023 376 ntTSL 3 BASIC1.11□□□□□ -2.23
SKA3Q8IX90 LINC02238-202ENST00000436262 320 ntTSL 3 BASIC1.11□□□□□ -2.23
SKA3Q8IX90 AL137792.2-201ENST00000443484 235 ntBASIC1.11□□□□□ -2.23
SKA3Q8IX90 FCF1P4-201ENST00000448326 183 ntBASIC1.11□□□□□ -2.23
SKA3Q8IX90 RPS29P29-201ENST00000456396 171 ntBASIC1.11□□□□□ -2.23
SKA3Q8IX90 AC091951.2-201ENST00000500762 203 ntBASIC1.11□□□□□ -2.23
SKA3Q8IX90 RNU6-408P-201ENST00000515910 100 ntBASIC1.11□□□□□ -2.23
SKA3Q8IX90 RNU6-1278P-201ENST00000516130 107 ntBASIC1.11□□□□□ -2.23
SKA3Q8IX90 Y_RNA.718-201ENST00000517110 102 ntBASIC1.11□□□□□ -2.23
SKA3Q8IX90 SUMO2P16-201ENST00000519475 264 ntBASIC1.11□□□□□ -2.23
SKA3Q8IX90 AC144568.1-201ENST00000520139 137 ntBASIC1.11□□□□□ -2.23
SKA3Q8IX90 AC023442.1-201ENST00000531247 422 ntBASIC1.11□□□□□ -2.23
SKA3Q8IX90 RPL21P9-201ENST00000556149 474 ntBASIC1.11□□□□□ -2.23
SKA3Q8IX90 MIR3660-201ENST00000584845 100 ntBASIC1.11□□□□□ -2.23
SKA3Q8IX90 AC005828.6-201ENST00000606610 232 ntBASIC1.11□□□□□ -2.23
SKA3Q8IX90 AC025253.1-201ENST00000613623 543 ntBASIC1.11□□□□□ -2.23
SKA3Q8IX90 AL078604.3-201ENST00000615580 211 ntBASIC1.11□□□□□ -2.23
SKA3Q8IX90 FAS-AS1.2-201ENST00000620386 170 ntBASIC1.11□□□□□ -2.23
SKA3Q8IX90 AC011604.2-202ENST00000540229 2451 ntAPPRIS P5 TSL 2 BASIC1.11□□□□□ -2.23
SKA3Q8IX90 RNU6-939P-201ENST00000384634 107 ntBASIC1.1□□□□□ -2.23
SKA3Q8IX90 SNORD78.2-201ENST00000391076 69 ntBASIC1.1□□□□□ -2.23
SKA3Q8IX90 RNU11-5P-201ENST00000391216 129 ntBASIC1.1□□□□□ -2.23
SKA3Q8IX90 SNX2P2-201ENST00000424553 323 ntBASIC1.1□□□□□ -2.23
SKA3Q8IX90 AC092813.2-201ENST00000434540 399 ntTSL 3 BASIC1.1□□□□□ -2.23
SKA3Q8IX90 AL591504.1-201ENST00000450681 414 ntTSL 3 BASIC1.1□□□□□ -2.23
SKA3Q8IX90 RNU2-56P-201ENST00000516826 190 ntBASIC1.1□□□□□ -2.23
SKA3Q8IX90 AP003128.1-201ENST00000531414 448 ntTSL 2 BASIC1.1□□□□□ -2.23
SKA3Q8IX90 MIR3124-201ENST00000582636 67 ntBASIC1.1□□□□□ -2.23
SKA3Q8IX90 AL353770.2-201ENST00000620024 78 ntBASIC1.1□□□□□ -2.23
SKA3Q8IX90 CTDSPL2-202ENST00000558373 4255 ntTSL 1 (best) BASIC1.09□□□□□ -2.23
SKA3Q8IX90 Y_RNA.70-201ENST00000362886 110 ntBASIC1.09□□□□□ -2.23
SKA3Q8IX90 RNU6-490P-201ENST00000362985 107 ntBASIC1.09□□□□□ -2.23
SKA3Q8IX90 Y_RNA.267-201ENST00000364679 109 ntBASIC1.09□□□□□ -2.23
SKA3Q8IX90 RNU6-1310P-201ENST00000384153 107 ntBASIC1.09□□□□□ -2.23
SKA3Q8IX90 CEP57L1P1-201ENST00000430943 1201 ntBASIC1.09□□□□□ -2.23
SKA3Q8IX90 AC099799.1-201ENST00000439809 192 ntBASIC1.09□□□□□ -2.23
SKA3Q8IX90 AC092755.1-201ENST00000441746 97 ntTSL 3 BASIC1.09□□□□□ -2.23
SKA3Q8IX90 AC093019.1-201ENST00000443135 252 ntBASIC1.09□□□□□ -2.23
SKA3Q8IX90 SUMO1P2-201ENST00000452524 304 ntBASIC1.09□□□□□ -2.23
Retrieved 100 of 98,524 protein–RNA pairs in 214.6 ms