Protein–RNA interactions for Protein: Q5M7Z0

RNFT1, E3 ubiquitin-protein ligase RNFT1, humanhuman

Predictions only

Length 435 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNFT1Q5M7Z0 AL358944.1-201ENST00000528537 144 ntBASIC3.48□□□□□ -1.85
RNFT1Q5M7Z0 MIR4712-201ENST00000583750 82 ntBASIC3.48□□□□□ -1.85
RNFT1Q5M7Z0 ZNF415-224ENST00000601493 2132 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
RNFT1Q5M7Z0 DLEU2_5.2-201ENST00000610606 84 ntBASIC3.48□□□□□ -1.85
RNFT1Q5M7Z0 AC145423.2-201ENST00000610631 239 ntBASIC3.48□□□□□ -1.85
RNFT1Q5M7Z0 AC091932.4-201ENST00000623386 200 ntBASIC3.48□□□□□ -1.85
RNFT1Q5M7Z0 VGLL4-219ENST00000638314 93 ntTSL 5 BASIC3.48□□□□□ -1.85
RNFT1Q5M7Z0 AC009093.8-201ENST00000641769 292 ntBASIC3.48□□□□□ -1.85
RNFT1Q5M7Z0 FAM214A-216ENST00000619572 3548 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
RNFT1Q5M7Z0 AL161912.2-201ENST00000565707 3007 ntBASIC3.48□□□□□ -1.85
RNFT1Q5M7Z0 ERBB4-203ENST00000402597 11699 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
RNFT1Q5M7Z0 FIGNL1-201ENST00000356889 3471 ntAPPRIS P1 TSL 1 (best) BASIC3.47□□□□□ -1.85
RNFT1Q5M7Z0 KTN1-204ENST00000395311 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC3.47□□□□□ -1.85
RNFT1Q5M7Z0 WNK3-202ENST00000375159 5403 ntAPPRIS P3 TSL 1 (best) BASIC3.47□□□□□ -1.85
RNFT1Q5M7Z0 FAM111A-207ENST00000531147 3996 ntAPPRIS P1 TSL 1 (best) BASIC3.47□□□□□ -1.85
RNFT1Q5M7Z0 C6orf10-202ENST00000375015 2173 ntAPPRIS ALT2 TSL 5 BASIC3.47□□□□□ -1.85
RNFT1Q5M7Z0 Y_RNA.351-201ENST00000365436 96 ntBASIC3.47□□□□□ -1.85
RNFT1Q5M7Z0 SNORD58A-201ENST00000383875 65 ntBASIC3.47□□□□□ -1.85
RNFT1Q5M7Z0 RNU6-1201P-201ENST00000384227 107 ntBASIC3.47□□□□□ -1.85
RNFT1Q5M7Z0 MIR199A2-201ENST00000385289 110 ntBASIC3.47□□□□□ -1.85
RNFT1Q5M7Z0 MIR591-201ENST00000385290 95 ntBASIC3.47□□□□□ -1.85
RNFT1Q5M7Z0 MIR802-201ENST00000390235 94 ntBASIC3.47□□□□□ -1.85
RNFT1Q5M7Z0 RNU7-23P-201ENST00000459465 62 ntBASIC3.47□□□□□ -1.85
RNFT1Q5M7Z0 AP002884.2-201ENST00000471647 395 ntBASIC3.47□□□□□ -1.85
RNFT1Q5M7Z0 AC006445.1-201ENST00000491925 405 ntBASIC3.47□□□□□ -1.85
RNFT1Q5M7Z0 RNU7-25P-201ENST00000516544 62 ntBASIC3.47□□□□□ -1.85
RNFT1Q5M7Z0 AC110741.2-201ENST00000605278 268 ntBASIC3.47□□□□□ -1.85
RNFT1Q5M7Z0 RNF6-201ENST00000346166 3282 ntAPPRIS P1 TSL 1 (best) BASIC3.47□□□□□ -1.85
RNFT1Q5M7Z0 SYNE2-204ENST00000358025 21842 ntAPPRIS P3 TSL 5 BASIC3.47□□□□□ -1.85
RNFT1Q5M7Z0 ETV1-202ENST00000399357 6096 ntTSL 2 BASIC3.47□□□□□ -1.85
RNFT1Q5M7Z0 CLIC2-202ENST00000369449 2655 ntAPPRIS P1 TSL 1 (best) BASIC3.47□□□□□ -1.85
RNFT1Q5M7Z0 TNNI3K-201ENST00000326637 3001 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.85
RNFT1Q5M7Z0 DDIAS-201ENST00000329143 3367 ntAPPRIS P2 TSL 1 (best) BASIC3.46□□□□□ -1.85
RNFT1Q5M7Z0 SYNE2-202ENST00000344113 21777 ntAPPRIS ALT2 TSL 1 (best) BASIC3.46□□□□□ -1.85
RNFT1Q5M7Z0 CEP44-201ENST00000296519 4173 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.86
RNFT1Q5M7Z0 CHM-205ENST00000615443 2821 ntTSL 1 (best) BASIC3.46□□□□□ -1.86
RNFT1Q5M7Z0 XIRP2-204ENST00000409273 12269 ntTSL 1 (best) BASIC3.46□□□□□ -1.86
RNFT1Q5M7Z0 MIR126-201ENST00000362291 85 ntBASIC3.46□□□□□ -1.86
RNFT1Q5M7Z0 SNORA63.1-201ENST00000362493 131 ntBASIC3.46□□□□□ -1.86
RNFT1Q5M7Z0 Y_RNA.191-201ENST00000363972 113 ntBASIC3.46□□□□□ -1.86
RNFT1Q5M7Z0 RNA5SP387-201ENST00000364226 106 ntBASIC3.46□□□□□ -1.86
RNFT1Q5M7Z0 Y_RNA.299-201ENST00000364973 94 ntBASIC3.46□□□□□ -1.86
RNFT1Q5M7Z0 TRDJ2-201ENST00000390475 54 ntAPPRIS P1 BASIC3.46□□□□□ -1.86
RNFT1Q5M7Z0 DBIP2-201ENST00000419076 262 ntBASIC3.46□□□□□ -1.86
RNFT1Q5M7Z0 AL035423.1-201ENST00000420331 213 ntBASIC3.46□□□□□ -1.86
RNFT1Q5M7Z0 AL445646.1-201ENST00000431784 216 ntBASIC3.46□□□□□ -1.86
RNFT1Q5M7Z0 AC091544.4-201ENST00000555268 342 ntBASIC3.46□□□□□ -1.86
RNFT1Q5M7Z0 AL360157.1-201ENST00000565962 87 ntBASIC3.46□□□□□ -1.86
RNFT1Q5M7Z0 AC078899.2-201ENST00000595282 212 ntBASIC3.46□□□□□ -1.86
RNFT1Q5M7Z0 AC020914.4-201ENST00000597690 277 ntBASIC3.46□□□□□ -1.86
RNFT1Q5M7Z0 ERBIN-214ENST00000511297 4257 ntAPPRIS ALT1 TSL 5 BASIC3.46□□□□□ -1.86
RNFT1Q5M7Z0 AL445259.1-201ENST00000587106 2984 ntTSL 5 BASIC3.45□□□□□ -1.86
RNFT1Q5M7Z0 UBE3AP2-201ENST00000429033 2259 ntBASIC3.45□□□□□ -1.86
RNFT1Q5M7Z0 CRB1-201ENST00000367397 9023 ntTSL 2 BASIC3.45□□□□□ -1.86
RNFT1Q5M7Z0 RNU6-743P-201ENST00000364151 106 ntBASIC3.45□□□□□ -1.86
RNFT1Q5M7Z0 Y_RNA.545-201ENST00000384652 105 ntBASIC3.45□□□□□ -1.86
RNFT1Q5M7Z0 Y_RNA.547-201ENST00000384654 119 ntBASIC3.45□□□□□ -1.86
RNFT1Q5M7Z0 HMGN2P8-201ENST00000391458 268 ntBASIC3.45□□□□□ -1.86
RNFT1Q5M7Z0 RNA5SP144-201ENST00000410846 116 ntBASIC3.45□□□□□ -1.86
RNFT1Q5M7Z0 AL121760.1-201ENST00000447206 346 ntTSL 2 BASIC3.45□□□□□ -1.86
RNFT1Q5M7Z0 AC233266.1-201ENST00000454518 96 ntBASIC3.45□□□□□ -1.86
RNFT1Q5M7Z0 RNA5SP310-201ENST00000459084 116 ntBASIC3.45□□□□□ -1.86
RNFT1Q5M7Z0 RPL23AP63-201ENST00000498752 471 ntBASIC3.45□□□□□ -1.86
RNFT1Q5M7Z0 AC004812.1-201ENST00000540773 146 ntBASIC3.45□□□□□ -1.86
RNFT1Q5M7Z0 MIR5187-201ENST00000583479 76 ntBASIC3.45□□□□□ -1.86
RNFT1Q5M7Z0 AC242852.1-201ENST00000612151 96 ntBASIC3.45□□□□□ -1.86
RNFT1Q5M7Z0 HOTAIRM1_4.1-201ENST00000617934 102 ntBASIC3.45□□□□□ -1.86
RNFT1Q5M7Z0 AC244015.1-201ENST00000622301 99 ntBASIC3.45□□□□□ -1.86
RNFT1Q5M7Z0 AC090517.3-201ENST00000625170 141 ntBASIC3.45□□□□□ -1.86
RNFT1Q5M7Z0 AC095038.3-201ENST00000634439 195 ntBASIC3.45□□□□□ -1.86
RNFT1Q5M7Z0 FGD4-211ENST00000531134 2924 ntTSL 2 BASIC3.45□□□□□ -1.86
RNFT1Q5M7Z0 DOCK7-201ENST00000251157 7084 ntAPPRIS ALT2 TSL 5 BASIC3.45□□□□□ -1.86
RNFT1Q5M7Z0 IFT80-220ENST00000483465 4044 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
RNFT1Q5M7Z0 MYCBP2-211ENST00000544440 14664 ntAPPRIS P1 TSL 1 (best) BASIC3.45□□□□□ -1.86
RNFT1Q5M7Z0 TAX1BP1-213ENST00000543117 3365 ntAPPRIS ALT2 TSL 2 BASIC3.45□□□□□ -1.86
RNFT1Q5M7Z0 CEP170-202ENST00000366542 6828 ntAPPRIS P1 TSL 5 BASIC3.44□□□□□ -1.86
RNFT1Q5M7Z0 GAB1-203ENST00000505913 2477 ntTSL 2 BASIC3.44□□□□□ -1.86
RNFT1Q5M7Z0 MBNL1-220ENST00000493459 4205 ntTSL 1 (best) BASIC3.44□□□□□ -1.86
RNFT1Q5M7Z0 SNORD46.1-201ENST00000364139 104 ntBASIC3.44□□□□□ -1.86
RNFT1Q5M7Z0 RNA5SP51-201ENST00000364750 119 ntBASIC3.44□□□□□ -1.86
RNFT1Q5M7Z0 RNU6-442P-201ENST00000383968 104 ntBASIC3.44□□□□□ -1.86
RNFT1Q5M7Z0 MIR522-201ENST00000385071 87 ntBASIC3.44□□□□□ -1.86
RNFT1Q5M7Z0 MIR23A-201ENST00000385245 73 ntBASIC3.44□□□□□ -1.86
RNFT1Q5M7Z0 U8.15-201ENST00000390947 134 ntBASIC3.44□□□□□ -1.86
RNFT1Q5M7Z0 SNORA7.5-201ENST00000410672 110 ntBASIC3.44□□□□□ -1.86
RNFT1Q5M7Z0 AL022718.1-201ENST00000412004 84 ntBASIC3.44□□□□□ -1.86
RNFT1Q5M7Z0 AC097463.2-201ENST00000421074 142 ntBASIC3.44□□□□□ -1.86
RNFT1Q5M7Z0 HMGN2P31-201ENST00000432430 273 ntBASIC3.44□□□□□ -1.86
RNFT1Q5M7Z0 AL445490.2-201ENST00000440492 441 ntTSL 3 BASIC3.44□□□□□ -1.86
RNFT1Q5M7Z0 AC025750.2-201ENST00000442609 450 ntBASIC3.44□□□□□ -1.86
RNFT1Q5M7Z0 AC114801.3-201ENST00000510231 177 ntBASIC3.44□□□□□ -1.86
RNFT1Q5M7Z0 AC104619.4-201ENST00000510773 249 ntBASIC3.44□□□□□ -1.86
RNFT1Q5M7Z0 MIR2114-201ENST00000516645 80 ntBASIC3.44□□□□□ -1.86
RNFT1Q5M7Z0 SNORA18.7-201ENST00000516910 131 ntBASIC3.44□□□□□ -1.86
RNFT1Q5M7Z0 NCRNA00250-201ENST00000519500 519 ntTSL 4 BASIC3.44□□□□□ -1.86
RNFT1Q5M7Z0 MIR3922-201ENST00000585192 84 ntBASIC3.44□□□□□ -1.86
RNFT1Q5M7Z0 AC096720.1-201ENST00000604441 183 ntBASIC3.44□□□□□ -1.86
RNFT1Q5M7Z0 AL591424.2-201ENST00000617023 128 ntBASIC3.44□□□□□ -1.86
RNFT1Q5M7Z0 AC002076.2-201ENST00000617362 122 ntBASIC3.44□□□□□ -1.86
RNFT1Q5M7Z0 MGA-201ENST00000219905 12042 ntAPPRIS P4 TSL 5 BASIC3.44□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 114.4 ms