Protein–RNA interactions for Protein: Q4VC31

CCDC58, Coiled-coil domain-containing protein 58, humanhuman

Predictions only

Length 144 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC58Q4VC31 AC107297.1-201ENST00000459991 176 ntBASIC-1.13□□□□□ -2.59
CCDC58Q4VC31 AC074198.2-201ENST00000508153 258 ntBASIC-1.13□□□□□ -2.59
CCDC58Q4VC31 CCDC7-215ENST00000639629 4158 ntAPPRIS ALT2 TSL 5 BASIC-1.13□□□□□ -2.59
CCDC58Q4VC31 RNU4-1-201ENST00000363925 141 ntBASIC-1.14□□□□□ -2.59
CCDC58Q4VC31 SNORD115-7-201ENST00000365306 82 ntBASIC-1.14□□□□□ -2.59
CCDC58Q4VC31 MIR802-201ENST00000390235 94 ntBASIC-1.14□□□□□ -2.59
CCDC58Q4VC31 RNU2-54P-201ENST00000410299 190 ntBASIC-1.14□□□□□ -2.59
CCDC58Q4VC31 AL512326.2-201ENST00000426359 151 ntBASIC-1.14□□□□□ -2.59
CCDC58Q4VC31 RPL22P17-201ENST00000438729 315 ntBASIC-1.14□□□□□ -2.59
CCDC58Q4VC31 ZNF114P1-201ENST00000453500 292 ntBASIC-1.14□□□□□ -2.59
CCDC58Q4VC31 AC116353.3-201ENST00000511215 249 ntBASIC-1.14□□□□□ -2.59
CCDC58Q4VC31 RNU6-469P-201ENST00000516253 101 ntBASIC-1.14□□□□□ -2.59
CCDC58Q4VC31 CR383656.4-201ENST00000546909 122 ntBASIC-1.14□□□□□ -2.59
CCDC58Q4VC31 MTND1P8-201ENST00000571424 950 ntBASIC-1.14□□□□□ -2.59
CCDC58Q4VC31 MIR4752-201ENST00000579672 72 ntBASIC-1.14□□□□□ -2.59
CCDC58Q4VC31 MIR3681-201ENST00000580089 72 ntBASIC-1.14□□□□□ -2.59
CCDC58Q4VC31 AC010608.3-201ENST00000625048 527 ntBASIC-1.14□□□□□ -2.59
CCDC58Q4VC31 MIR6828-201ENST00000636181 60 ntBASIC-1.14□□□□□ -2.59
CCDC58Q4VC31 Y_RNA.371-201ENST00000365591 113 ntBASIC-1.15□□□□□ -2.59
CCDC58Q4VC31 RNY1P7-201ENST00000384743 110 ntBASIC-1.15□□□□□ -2.59
CCDC58Q4VC31 MIR625-201ENST00000385047 85 ntBASIC-1.15□□□□□ -2.59
CCDC58Q4VC31 RNU6-550P-201ENST00000391057 101 ntBASIC-1.15□□□□□ -2.59
CCDC58Q4VC31 RNU5A-5P-201ENST00000411054 116 ntBASIC-1.15□□□□□ -2.59
CCDC58Q4VC31 AC002456.1-203ENST00000412669 449 ntTSL 3 BASIC-1.15□□□□□ -2.59
CCDC58Q4VC31 AC244250.2-201ENST00000418731 148 ntBASIC-1.15□□□□□ -2.59
CCDC58Q4VC31 BTF3P11-201ENST00000426582 477 ntBASIC-1.15□□□□□ -2.59
CCDC58Q4VC31 AC119618.1-201ENST00000434191 222 ntBASIC-1.15□□□□□ -2.59
CCDC58Q4VC31 RNU6-1037P-201ENST00000459571 107 ntBASIC-1.15□□□□□ -2.59
CCDC58Q4VC31 AC010424.1-201ENST00000506336 297 ntBASIC-1.15□□□□□ -2.59
CCDC58Q4VC31 RNU6-758P-201ENST00000516292 89 ntBASIC-1.15□□□□□ -2.59
CCDC58Q4VC31 RNU6-504P-201ENST00000516568 104 ntBASIC-1.15□□□□□ -2.59
CCDC58Q4VC31 RNU6-448P-201ENST00000517052 107 ntBASIC-1.15□□□□□ -2.59
CCDC58Q4VC31 SNORA25.17-201ENST00000517184 124 ntBASIC-1.15□□□□□ -2.59
CCDC58Q4VC31 MTND1P5-201ENST00000517906 940 ntBASIC-1.15□□□□□ -2.59
CCDC58Q4VC31 AC108676.2-201ENST00000605225 163 ntBASIC-1.15□□□□□ -2.59
CCDC58Q4VC31 MIR148A-201ENST00000362215 68 ntBASIC-1.16□□□□□ -2.6
CCDC58Q4VC31 RNU4-21P-201ENST00000362802 126 ntBASIC-1.16□□□□□ -2.6
CCDC58Q4VC31 RNU6-1286P-201ENST00000383871 107 ntBASIC-1.16□□□□□ -2.6
CCDC58Q4VC31 RPL21P38-201ENST00000418090 167 ntBASIC-1.16□□□□□ -2.6
CCDC58Q4VC31 LINC00844-201ENST00000432535 477 ntTSL 2 BASIC-1.16□□□□□ -2.6
CCDC58Q4VC31 CFLAR-225ENST00000494258 693 ntTSL 3 BASIC-1.16□□□□□ -2.6
CCDC58Q4VC31 AC010387.1-201ENST00000507526 487 ntTSL 2 BASIC-1.16□□□□□ -2.6
CCDC58Q4VC31 AC079140.5-201ENST00000507882 310 ntBASIC-1.16□□□□□ -2.6
CCDC58Q4VC31 AC010598.1-201ENST00000510378 103 ntBASIC-1.16□□□□□ -2.6
CCDC58Q4VC31 AC022616.3-201ENST00000523940 148 ntBASIC-1.16□□□□□ -2.6
CCDC58Q4VC31 MIR4264-201ENST00000583520 66 ntBASIC-1.16□□□□□ -2.6
CCDC58Q4VC31 MIR3925-201ENST00000584674 77 ntBASIC-1.16□□□□□ -2.6
CCDC58Q4VC31 AC137590.2-201ENST00000619709 240 ntBASIC-1.16□□□□□ -2.6
CCDC58Q4VC31 AC091948.2-201ENST00000636510 279 ntBASIC-1.16□□□□□ -2.6
CCDC58Q4VC31 SNORD87-201ENST00000364849 89 ntBASIC-1.17□□□□□ -2.6
CCDC58Q4VC31 RNU6-1162P-201ENST00000384443 104 ntBASIC-1.17□□□□□ -2.6
CCDC58Q4VC31 RNU6-376P-201ENST00000384731 106 ntBASIC-1.17□□□□□ -2.6
CCDC58Q4VC31 AL355994.1-201ENST00000424379 260 ntBASIC-1.17□□□□□ -2.6
CCDC58Q4VC31 AC109327.2-201ENST00000448339 378 ntBASIC-1.17□□□□□ -2.6
CCDC58Q4VC31 SCARNA20.2-201ENST00000516052 116 ntBASIC-1.17□□□□□ -2.6
CCDC58Q4VC31 AC090155.2-201ENST00000518854 267 ntTSL 3 BASIC-1.17□□□□□ -2.6
CCDC58Q4VC31 LRRC34P1-201ENST00000542742 915 ntBASIC-1.17□□□□□ -2.6
CCDC58Q4VC31 MIR548AD-201ENST00000584780 82 ntBASIC-1.17□□□□□ -2.6
CCDC58Q4VC31 SNORD92-201ENST00000585078 85 ntBASIC-1.17□□□□□ -2.6
CCDC58Q4VC31 CLRN1-AS1.1-201ENST00000615643 79 ntBASIC-1.17□□□□□ -2.6
CCDC58Q4VC31 AC022306.3-201ENST00000619930 550 ntBASIC-1.17□□□□□ -2.6
CCDC58Q4VC31 AC022418.1-201ENST00000624118 445 ntBASIC-1.17□□□□□ -2.6
CCDC58Q4VC31 SNORD68-201ENST00000363214 84 ntBASIC-1.18□□□□□ -2.6
CCDC58Q4VC31 RNU6-1322P-201ENST00000364309 107 ntBASIC-1.18□□□□□ -2.6
CCDC58Q4VC31 U8.5-201ENST00000364528 136 ntBASIC-1.18□□□□□ -2.6
CCDC58Q4VC31 MIR196A1-201ENST00000388006 70 ntBASIC-1.18□□□□□ -2.6
CCDC58Q4VC31 FCF1P9-201ENST00000412546 282 ntBASIC-1.18□□□□□ -2.6
CCDC58Q4VC31 LINC01870-201ENST00000427042 390 ntTSL 3 BASIC-1.18□□□□□ -2.6
CCDC58Q4VC31 AC010587.1-201ENST00000505809 469 ntBASIC-1.18□□□□□ -2.6
CCDC58Q4VC31 AC107208.1-201ENST00000508265 519 ntTSL 4 BASIC-1.18□□□□□ -2.6
CCDC58Q4VC31 AC005304.3-201ENST00000581533 511 ntTSL 3 BASIC-1.18□□□□□ -2.6
CCDC58Q4VC31 AL139418.1-201ENST00000613613 177 ntBASIC-1.18□□□□□ -2.6
CCDC58Q4VC31 RNA5SP205-201ENST00000364653 136 ntBASIC-1.19□□□□□ -2.6
CCDC58Q4VC31 RNU6-245P-201ENST00000384020 107 ntBASIC-1.19□□□□□ -2.6
CCDC58Q4VC31 MIR125B2-201ENST00000385128 89 ntBASIC-1.19□□□□□ -2.6
CCDC58Q4VC31 SNORA26.5-201ENST00000391215 123 ntBASIC-1.19□□□□□ -2.6
CCDC58Q4VC31 MTCO2P33-201ENST00000402100 465 ntBASIC-1.19□□□□□ -2.6
CCDC58Q4VC31 POLR2KP2-201ENST00000438155 177 ntBASIC-1.19□□□□□ -2.6
CCDC58Q4VC31 SCARNA11.2-201ENST00000517183 154 ntBASIC-1.19□□□□□ -2.6
CCDC58Q4VC31 AP001328.1-201ENST00000528550 176 ntBASIC-1.19□□□□□ -2.6
CCDC58Q4VC31 AF250324.2-201ENST00000608299 610 ntBASIC-1.19□□□□□ -2.6
CCDC58Q4VC31 RNU6-227P-201ENST00000362865 103 ntBASIC-1.2□□□□□ -2.6
CCDC58Q4VC31 Y_RNA.251-201ENST00000364551 99 ntBASIC-1.2□□□□□ -2.6
CCDC58Q4VC31 MIR873-201ENST00000401120 77 ntBASIC-1.2□□□□□ -2.6
CCDC58Q4VC31 Z95118.1-201ENST00000421372 247 ntBASIC-1.2□□□□□ -2.6
CCDC58Q4VC31 AC091885.1-201ENST00000506658 268 ntBASIC-1.2□□□□□ -2.6
CCDC58Q4VC31 XIRP2-AS1-201ENST00000525330 776 ntTSL 3 BASIC-1.2□□□□□ -2.6
CCDC58Q4VC31 AC087685.1-201ENST00000587507 141 ntBASIC-1.2□□□□□ -2.6
CCDC58Q4VC31 SYCP2-202ENST00000371001 5479 ntAPPRIS P2 TSL 1 (best) BASIC-1.2□□□□□ -2.6
CCDC58Q4VC31 RNA5SP368-201ENST00000364298 116 ntBASIC-1.21□□□□□ -2.6
CCDC58Q4VC31 AL390729.2-201ENST00000416137 156 ntBASIC-1.21□□□□□ -2.6
CCDC58Q4VC31 AC004543.1-201ENST00000418764 369 ntTSL 5 BASIC-1.21□□□□□ -2.6
CCDC58Q4VC31 ELOCP4-201ENST00000420090 333 ntBASIC-1.21□□□□□ -2.6
CCDC58Q4VC31 SUMO1P3-201ENST00000439961 304 ntBASIC-1.21□□□□□ -2.6
CCDC58Q4VC31 RNU6-751P-201ENST00000516382 101 ntBASIC-1.21□□□□□ -2.6
CCDC58Q4VC31 SNORA18.4-201ENST00000516440 124 ntBASIC-1.21□□□□□ -2.6
CCDC58Q4VC31 MIR4762-201ENST00000585261 75 ntBASIC-1.21□□□□□ -2.6
CCDC58Q4VC31 AC002044.1-201ENST00000606707 158 ntBASIC-1.21□□□□□ -2.6
CCDC58Q4VC31 AC063944.3-201ENST00000609969 533 ntBASIC-1.21□□□□□ -2.6
CCDC58Q4VC31 TRAJ28-201ENST00000390509 66 ntAPPRIS P1 BASIC-1.22□□□□□ -2.6
Retrieved 100 of 98,524 protein–RNA pairs in 243.1 ms