Protein–RNA interactions for Protein: Q15858

SCN9A, Sodium channel protein type 9 subunit alpha, humanhuman

Predictions only

Length 1,988 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9AQ15858 AL358934.1-201ENST00000432346 324 ntBASIC0.32□□□□□ -2.36
SCN9AQ15858 AC002429.1-201ENST00000437672 148 ntBASIC0.32□□□□□ -2.36
SCN9AQ15858 ACA59.1-201ENST00000515966 143 ntBASIC0.32□□□□□ -2.36
SCN9AQ15858 RNU7-128P-201ENST00000517247 62 ntBASIC0.32□□□□□ -2.36
SCN9AQ15858 MIR3672-201ENST00000584290 82 ntBASIC0.32□□□□□ -2.36
SCN9AQ15858 RNU6-254P-201ENST00000363377 107 ntBASIC0.31□□□□□ -2.36
SCN9AQ15858 Y_RNA.184-201ENST00000363884 108 ntBASIC0.31□□□□□ -2.36
SCN9AQ15858 Y_RNA.267-201ENST00000364679 109 ntBASIC0.31□□□□□ -2.36
SCN9AQ15858 Y_RNA.319-201ENST00000365138 92 ntBASIC0.31□□□□□ -2.36
SCN9AQ15858 SNORA2.2-201ENST00000365473 135 ntBASIC0.31□□□□□ -2.36
SCN9AQ15858 MIR32-201ENST00000384965 70 ntBASIC0.31□□□□□ -2.36
SCN9AQ15858 AC004543.1-201ENST00000418764 369 ntTSL 5 BASIC0.31□□□□□ -2.36
SCN9AQ15858 AL500522.1-201ENST00000423667 318 ntTSL 3 BASIC0.31□□□□□ -2.36
SCN9AQ15858 AC098869.1-201ENST00000481627 292 ntBASIC0.31□□□□□ -2.36
SCN9AQ15858 RNU4-54P-201ENST00000516428 129 ntBASIC0.31□□□□□ -2.36
SCN9AQ15858 AL358937.1-201ENST00000524512 336 ntTSL 2 BASIC0.31□□□□□ -2.36
SCN9AQ15858 LRRC34P1-201ENST00000542742 915 ntBASIC0.31□□□□□ -2.36
SCN9AQ15858 AL162413.1-201ENST00000603198 110 ntBASIC0.31□□□□□ -2.36
SCN9AQ15858 SNORD68-201ENST00000363214 84 ntBASIC0.3□□□□□ -2.36
SCN9AQ15858 Y_RNA.167-201ENST00000363735 109 ntBASIC0.3□□□□□ -2.36
SCN9AQ15858 Y_RNA.336-201ENST00000365307 109 ntBASIC0.3□□□□□ -2.36
SCN9AQ15858 Y_RNA.433-201ENST00000384089 102 ntBASIC0.3□□□□□ -2.36
SCN9AQ15858 MIR520C-201ENST00000385005 87 ntBASIC0.3□□□□□ -2.36
SCN9AQ15858 MIR487A-201ENST00000385009 80 ntBASIC0.3□□□□□ -2.36
SCN9AQ15858 RPS3AP1-201ENST00000413190 320 ntBASIC0.3□□□□□ -2.36
SCN9AQ15858 MTCO3P19-201ENST00000415864 321 ntBASIC0.3□□□□□ -2.36
SCN9AQ15858 RPEP5-201ENST00000441137 268 ntBASIC0.3□□□□□ -2.36
SCN9AQ15858 AC002350.1-201ENST00000490759 375 ntBASIC0.3□□□□□ -2.36
SCN9AQ15858 RNU6-1038P-201ENST00000516516 104 ntBASIC0.3□□□□□ -2.36
SCN9AQ15858 AL118558.2-201ENST00000556294 238 ntBASIC0.3□□□□□ -2.36
SCN9AQ15858 AL670729.3-201ENST00000602345 574 ntTSL 4 BASIC0.3□□□□□ -2.36
SCN9AQ15858 AL158063.1-201ENST00000615349 536 ntBASIC0.3□□□□□ -2.36
SCN9AQ15858 SERPINI2-207ENST00000476257 1837 ntAPPRIS P1 TSL 5 BASIC0.3□□□□□ -2.36
SCN9AQ15858 RNU6-1084P-201ENST00000362498 107 ntBASIC0.3□□□□□ -2.36
SCN9AQ15858 Y_RNA.100-201ENST00000363141 102 ntBASIC0.3□□□□□ -2.36
SCN9AQ15858 Y_RNA.231-201ENST00000364358 102 ntBASIC0.3□□□□□ -2.36
SCN9AQ15858 SNORD113.3-201ENST00000364630 78 ntBASIC0.3□□□□□ -2.36
SCN9AQ15858 RNU6-38P-201ENST00000384085 107 ntBASIC0.3□□□□□ -2.36
SCN9AQ15858 MIR526A1-201ENST00000384897 85 ntBASIC0.3□□□□□ -2.36
SCN9AQ15858 RNU6-332P-201ENST00000391193 108 ntBASIC0.3□□□□□ -2.36
SCN9AQ15858 AC244098.3-201ENST00000424803 96 ntBASIC0.3□□□□□ -2.36
SCN9AQ15858 LINC01707-201ENST00000425517 627 ntTSL 3 BASIC0.3□□□□□ -2.36
SCN9AQ15858 AC083904.1-201ENST00000487828 231 ntBASIC0.3□□□□□ -2.36
SCN9AQ15858 AC095059.1-201ENST00000502570 349 ntTSL 5 BASIC0.3□□□□□ -2.36
SCN9AQ15858 RNU4-77P-201ENST00000516692 156 ntBASIC0.3□□□□□ -2.36
SCN9AQ15858 MIR4764-201ENST00000580680 88 ntBASIC0.3□□□□□ -2.36
SCN9AQ15858 AC104695.3-201ENST00000604052 296 ntBASIC0.3□□□□□ -2.36
SCN9AQ15858 AL353765.1-201ENST00000605514 183 ntBASIC0.3□□□□□ -2.36
SCN9AQ15858 PTPN22-203ENST00000460620 1794 ntTSL 1 (best) BASIC0.29□□□□□ -2.36
SCN9AQ15858 SNORA27.1-201ENST00000362604 124 ntBASIC0.29□□□□□ -2.36
SCN9AQ15858 RNU2-66P-201ENST00000410650 161 ntBASIC0.29□□□□□ -2.36
SCN9AQ15858 AC018865.2-201ENST00000423631 129 ntBASIC0.29□□□□□ -2.36
SCN9AQ15858 AL392103.1-201ENST00000447000 198 ntBASIC0.29□□□□□ -2.36
SCN9AQ15858 RNU7-66P-201ENST00000459469 62 ntBASIC0.29□□□□□ -2.36
SCN9AQ15858 AC069528.1-201ENST00000490344 705 ntTSL 3 BASIC0.29□□□□□ -2.36
SCN9AQ15858 AC107401.1-201ENST00000503426 685 ntBASIC0.29□□□□□ -2.36
SCN9AQ15858 AC091996.1-201ENST00000522274 600 ntTSL 3 BASIC0.29□□□□□ -2.36
SCN9AQ15858 AC120024.3-201ENST00000603167 156 ntBASIC0.29□□□□□ -2.36
SCN9AQ15858 DLEU2_1.1-201ENST00000612089 120 ntBASIC0.29□□□□□ -2.36
SCN9AQ15858 DLEU2_1.2-201ENST00000614667 120 ntBASIC0.29□□□□□ -2.36
SCN9AQ15858 PIGPP3-201ENST00000425307 415 ntBASIC0.28□□□□□ -2.36
SCN9AQ15858 AC104332.1-201ENST00000440471 797 ntBASIC0.28□□□□□ -2.36
SCN9AQ15858 MTCO1P19-201ENST00000443487 500 ntBASIC0.28□□□□□ -2.36
SCN9AQ15858 RNU7-175P-201ENST00000515915 61 ntBASIC0.28□□□□□ -2.36
SCN9AQ15858 Y_RNA.683-201ENST00000516508 93 ntBASIC0.28□□□□□ -2.36
SCN9AQ15858 Y_RNA.695-201ENST00000516715 107 ntBASIC0.28□□□□□ -2.36
SCN9AQ15858 AP003715.1-201ENST00000532109 435 ntTSL 3 BASIC0.28□□□□□ -2.36
SCN9AQ15858 AP001330.5-201ENST00000607176 411 ntBASIC0.28□□□□□ -2.36
SCN9AQ15858 FAM157A-202ENST00000615155 405 ntBASIC0.28□□□□□ -2.36
SCN9AQ15858 MIR6759-201ENST00000638110 65 ntBASIC0.28□□□□□ -2.36
SCN9AQ15858 AC023934.1-201ENST00000574529 2389 ntBASIC0.28□□□□□ -2.36
SCN9AQ15858 DEUP1-202ENST00000525646 1920 ntTSL 1 (best) BASIC0.28□□□□□ -2.36
SCN9AQ15858 Y_RNA.2-201ENST00000362330 96 ntBASIC0.28□□□□□ -2.36
SCN9AQ15858 SNORA69-201ENST00000383895 132 ntBASIC0.28□□□□□ -2.36
SCN9AQ15858 SNORA2B-201ENST00000384583 137 ntBASIC0.28□□□□□ -2.36
SCN9AQ15858 RNU6-648P-201ENST00000410190 107 ntBASIC0.28□□□□□ -2.36
SCN9AQ15858 CALM2P4-201ENST00000430810 426 ntBASIC0.28□□□□□ -2.36
SCN9AQ15858 AC083798.1-201ENST00000472671 131 ntBASIC0.28□□□□□ -2.36
SCN9AQ15858 AC046134.1-201ENST00000514454 666 ntBASIC0.28□□□□□ -2.36
SCN9AQ15858 RNA5SP20-201ENST00000515976 84 ntBASIC0.28□□□□□ -2.36
SCN9AQ15858 AC060788.1-201ENST00000521318 469 ntBASIC0.28□□□□□ -2.36
SCN9AQ15858 MIR4667-201ENST00000578933 66 ntBASIC0.28□□□□□ -2.36
SCN9AQ15858 AL355073.2-201ENST00000612106 557 ntBASIC0.28□□□□□ -2.36
SCN9AQ15858 Y_RNA.77-201ENST00000362962 107 ntBASIC0.27□□□□□ -2.37
SCN9AQ15858 RNA5SP264-201ENST00000363115 107 ntBASIC0.27□□□□□ -2.37
SCN9AQ15858 Y_RNA.124-201ENST00000363339 93 ntBASIC0.27□□□□□ -2.37
SCN9AQ15858 LINC00583-201ENST00000381010 387 ntTSL 2 BASIC0.27□□□□□ -2.37
SCN9AQ15858 RNU6-281P-201ENST00000384212 103 ntBASIC0.27□□□□□ -2.37
SCN9AQ15858 RNU6ATAC33P-201ENST00000408647 126 ntBASIC0.27□□□□□ -2.37
SCN9AQ15858 RPS26P5-201ENST00000418544 335 ntBASIC0.27□□□□□ -2.37
SCN9AQ15858 ZNF885P-201ENST00000420174 1098 ntBASIC0.27□□□□□ -2.37
SCN9AQ15858 MRPS18CP6-201ENST00000423587 223 ntBASIC0.27□□□□□ -2.37
SCN9AQ15858 MRPS10P2-201ENST00000431226 381 ntBASIC0.27□□□□□ -2.37
SCN9AQ15858 AC096736.2-201ENST00000507972 175 ntTSL 3 BASIC0.27□□□□□ -2.37
SCN9AQ15858 AC024382.1-201ENST00000520224 292 ntTSL 3 BASIC0.27□□□□□ -2.37
SCN9AQ15858 AK6P2-201ENST00000549020 471 ntBASIC0.27□□□□□ -2.37
SCN9AQ15858 AC009269.4-201ENST00000557828 440 ntTSL 3 BASIC0.27□□□□□ -2.37
SCN9AQ15858 AC100830.2-201ENST00000581636 240 ntBASIC0.27□□□□□ -2.37
SCN9AQ15858 MIR3192-201ENST00000584920 77 ntBASIC0.27□□□□□ -2.37
SCN9AQ15858 Y_RNA.280-201ENST00000364765 112 ntBASIC0.26□□□□□ -2.37
Retrieved 100 of 98,524 protein–RNA pairs in 102.7 ms