Protein–RNA interactions for Protein: Q12948

FOXC1, Forkhead box protein C1, humanhuman

Predictions only

Length 553 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXC1Q12948 Y_RNA.267-201ENST00000364679 109 ntBASIC3.71□□□□□ -1.82
FOXC1Q12948 SNORD115-20-201ENST00000365099 82 ntBASIC3.71□□□□□ -1.82
FOXC1Q12948 Y_RNA.609-201ENST00000410669 89 ntBASIC3.71□□□□□ -1.82
FOXC1Q12948 AC093159.1-201ENST00000416845 424 ntTSL 3 BASIC3.71□□□□□ -1.82
FOXC1Q12948 AC090844.1-201ENST00000422019 156 ntBASIC3.71□□□□□ -1.82
FOXC1Q12948 AC009414.1-201ENST00000427200 443 ntBASIC3.71□□□□□ -1.82
FOXC1Q12948 AC093423.2-201ENST00000429074 437 ntTSL 3 BASIC3.71□□□□□ -1.82
FOXC1Q12948 AL035398.1-201ENST00000430869 322 ntBASIC3.71□□□□□ -1.82
FOXC1Q12948 AC090255.1-201ENST00000495779 349 ntBASIC3.71□□□□□ -1.82
FOXC1Q12948 LINC02230-201ENST00000511174 301 ntTSL 5 BASIC3.71□□□□□ -1.82
FOXC1Q12948 AC103810.1-201ENST00000579873 453 ntBASIC3.71□□□□□ -1.82
FOXC1Q12948 AC103810.7-201ENST00000607821 91 ntBASIC3.71□□□□□ -1.82
FOXC1Q12948 U7.4-201ENST00000614961 63 ntBASIC3.71□□□□□ -1.82
FOXC1Q12948 ADGRL2-204ENST00000370715 5585 ntTSL 1 (best) BASIC3.71□□□□□ -1.82
FOXC1Q12948 RNFT1-201ENST00000305783 2101 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
FOXC1Q12948 IDE-202ENST00000371581 4480 ntTSL 2 BASIC3.71□□□□□ -1.82
FOXC1Q12948 MRPL42-206ENST00000549982 15582 ntAPPRIS P2 TSL 1 (best) BASIC3.71□□□□□ -1.82
FOXC1Q12948 MCF2-210ENST00000536274 3461 ntAPPRIS ALT2 TSL 2 BASIC3.71□□□□□ -1.82
FOXC1Q12948 PKN2-AS1-202ENST00000458097 3542 ntTSL 2 BASIC3.7□□□□□ -1.82
FOXC1Q12948 SENP7-202ENST00000348610 3272 ntAPPRIS ALT2 TSL 1 (best) BASIC3.7□□□□□ -1.82
FOXC1Q12948 MIR340-201ENST00000362125 95 ntBASIC3.7□□□□□ -1.82
FOXC1Q12948 SNORA1B-201ENST00000362535 133 ntBASIC3.7□□□□□ -1.82
FOXC1Q12948 SNORA1.1-201ENST00000364671 133 ntBASIC3.7□□□□□ -1.82
FOXC1Q12948 MIR1289-1-201ENST00000408836 144 ntBASIC3.7□□□□□ -1.82
FOXC1Q12948 AP000867.2-201ENST00000532468 320 ntBASIC3.7□□□□□ -1.82
FOXC1Q12948 MIR8057-201ENST00000620957 69 ntBASIC3.7□□□□□ -1.82
FOXC1Q12948 SCN3A-201ENST00000283254 9091 ntAPPRIS P3 TSL 1 (best) BASIC3.7□□□□□ -1.82
FOXC1Q12948 AC114316.2-202ENST00000502934 2957 ntTSL 2 BASIC3.7□□□□□ -1.82
FOXC1Q12948 AP001273.1-201ENST00000624493 3152 ntBASIC3.7□□□□□ -1.82
FOXC1Q12948 TAX1BP1-213ENST00000543117 3365 ntAPPRIS ALT2 TSL 2 BASIC3.7□□□□□ -1.82
FOXC1Q12948 ERBIN-203ENST00000380938 4701 ntTSL 2 BASIC3.7□□□□□ -1.82
FOXC1Q12948 MBD5-212ENST00000627651 5610 ntTSL 5 BASIC3.69□□□□□ -1.82
FOXC1Q12948 Y_RNA.510-201ENST00000384511 114 ntBASIC3.69□□□□□ -1.82
FOXC1Q12948 RAB6C-AS1-202ENST00000433431 123 ntBASIC3.69□□□□□ -1.82
FOXC1Q12948 AL451129.1-201ENST00000437471 285 ntTSL 3 BASIC3.69□□□□□ -1.82
FOXC1Q12948 AC069257.2-201ENST00000441819 155 ntBASIC3.69□□□□□ -1.82
FOXC1Q12948 AL049830.1-201ENST00000468034 425 ntBASIC3.69□□□□□ -1.82
FOXC1Q12948 AC108729.3-201ENST00000513484 108 ntBASIC3.69□□□□□ -1.82
FOXC1Q12948 RNU6ATAC13P-201ENST00000516152 131 ntBASIC3.69□□□□□ -1.82
FOXC1Q12948 RNU6-1258P-201ENST00000516911 111 ntBASIC3.69□□□□□ -1.82
FOXC1Q12948 AC009093.3-203ENST00000565800 121 ntTSL 2 BASIC3.69□□□□□ -1.82
FOXC1Q12948 LINC00645-203ENST00000557399 3512 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
FOXC1Q12948 PIGN-229ENST00000638936 4233 ntAPPRIS P1 TSL 5 BASIC3.69□□□□□ -1.82
FOXC1Q12948 KIAA0586-215ENST00000619722 5597 ntAPPRIS ALT2 TSL 2 BASIC3.69□□□□□ -1.82
FOXC1Q12948 CEP120-203ENST00000328236 4710 ntAPPRIS P1 TSL 5 BASIC3.69□□□□□ -1.82
FOXC1Q12948 RBBP8-202ENST00000360790 2962 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
FOXC1Q12948 SLC17A4-203ENST00000439485 3699 ntTSL 5 BASIC3.68□□□□□ -1.82
FOXC1Q12948 RANBP6-201ENST00000259569 4576 ntAPPRIS P1 BASIC3.68□□□□□ -1.82
FOXC1Q12948 NUDT12-201ENST00000230792 3492 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
FOXC1Q12948 GLCE-202ENST00000559420 4840 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
FOXC1Q12948 WNK3-202ENST00000375159 5403 ntAPPRIS P3 TSL 1 (best) BASIC3.68□□□□□ -1.82
FOXC1Q12948 SLC6A15-203ENST00000450363 4229 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
FOXC1Q12948 CNOT1-201ENST00000317147 8471 ntAPPRIS P3 TSL 1 (best) BASIC3.68□□□□□ -1.82
FOXC1Q12948 MIR1251-201ENST00000408552 70 ntBASIC3.68□□□□□ -1.82
FOXC1Q12948 RNA5SP104-201ENST00000410989 118 ntBASIC3.68□□□□□ -1.82
FOXC1Q12948 ATP5A1P2-201ENST00000412323 255 ntBASIC3.68□□□□□ -1.82
FOXC1Q12948 RN7SL429P-201ENST00000479090 223 ntBASIC3.68□□□□□ -1.82
FOXC1Q12948 RN7SL489P-201ENST00000486185 223 ntBASIC3.68□□□□□ -1.82
FOXC1Q12948 RN7SL327P-201ENST00000488659 223 ntBASIC3.68□□□□□ -1.82
FOXC1Q12948 AC010255.2-201ENST00000505209 428 ntTSL 3 BASIC3.68□□□□□ -1.82
FOXC1Q12948 RNU6-998P-201ENST00000515894 101 ntBASIC3.68□□□□□ -1.82
FOXC1Q12948 SNORA4.4-201ENST00000515921 135 ntBASIC3.68□□□□□ -1.82
FOXC1Q12948 RNU1-61P-201ENST00000516107 151 ntBASIC3.68□□□□□ -1.82
FOXC1Q12948 MIR376B-201ENST00000614515 100 ntBASIC3.68□□□□□ -1.82
FOXC1Q12948 RN7SL853P-201ENST00000617250 223 ntBASIC3.68□□□□□ -1.82
FOXC1Q12948 CDH8-205ENST00000577730 8009 ntTSL 5 BASIC3.68□□□□□ -1.82
FOXC1Q12948 AC092881.1-201ENST00000638218 2733 ntBASIC3.68□□□□□ -1.82
FOXC1Q12948 CSRNP3-202ENST00000342316 11684 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
FOXC1Q12948 RGPD1-202ENST00000409776 6692 ntAPPRIS ALT2 TSL 1 (best) BASIC3.68□□□□□ -1.82
FOXC1Q12948 ZNF107-203ENST00000395391 6094 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
FOXC1Q12948 MTUS1-228ENST00000544260 3650 ntTSL 2 BASIC3.67□□□□□ -1.82
FOXC1Q12948 GAB1-203ENST00000505913 2477 ntTSL 2 BASIC3.67□□□□□ -1.82
FOXC1Q12948 SLC27A2-203ENST00000544960 2025 ntTSL 2 BASIC3.67□□□□□ -1.82
FOXC1Q12948 MECOM-219ENST00000628990 4835 ntAPPRIS P3 TSL 1 (best) BASIC3.67□□□□□ -1.82
FOXC1Q12948 Y_RNA.171-201ENST00000363760 102 ntBASIC3.67□□□□□ -1.82
FOXC1Q12948 RNU6-457P-201ENST00000363999 107 ntBASIC3.67□□□□□ -1.82
FOXC1Q12948 Y_RNA.247-201ENST00000364500 92 ntBASIC3.67□□□□□ -1.82
FOXC1Q12948 RNU6-1163P-201ENST00000364516 107 ntBASIC3.67□□□□□ -1.82
FOXC1Q12948 Y_RNA.336-201ENST00000365307 109 ntBASIC3.67□□□□□ -1.82
FOXC1Q12948 SNX2P2-201ENST00000424553 323 ntBASIC3.67□□□□□ -1.82
FOXC1Q12948 AC025518.1-201ENST00000479856 347 ntBASIC3.67□□□□□ -1.82
FOXC1Q12948 AC093729.1-201ENST00000513074 128 ntBASIC3.67□□□□□ -1.82
FOXC1Q12948 RN7SKP46-201ENST00000515942 234 ntBASIC3.67□□□□□ -1.82
FOXC1Q12948 AP002004.2-201ENST00000531656 154 ntBASIC3.67□□□□□ -1.82
FOXC1Q12948 AC069240.1-201ENST00000548774 375 ntBASIC3.67□□□□□ -1.82
FOXC1Q12948 AC120045.1-201ENST00000563502 251 ntTSL 3 BASIC3.67□□□□□ -1.82
FOXC1Q12948 AC140658.3-201ENST00000567603 271 ntBASIC3.67□□□□□ -1.82
FOXC1Q12948 AC139426.2-201ENST00000568289 251 ntTSL 3 BASIC3.67□□□□□ -1.82
FOXC1Q12948 AL512310.12-203ENST00000640543 90 ntBASIC3.67□□□□□ -1.82
FOXC1Q12948 RWDD2B-207ENST00000493196 3094 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
FOXC1Q12948 SPEF2-203ENST00000440995 5964 ntAPPRIS ALT2 TSL 5 BASIC3.67□□□□□ -1.82
FOXC1Q12948 LLPH-201ENST00000266604 7746 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
FOXC1Q12948 SLCO1B3-202ENST00000381545 2805 ntAPPRIS P1 TSL 2 BASIC3.66□□□□□ -1.82
FOXC1Q12948 CNTN6-201ENST00000350110 3814 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
FOXC1Q12948 ZC3H7A-202ENST00000396516 3845 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
FOXC1Q12948 DNAH8-205ENST00000449981 12940 ntTSL 5 BASIC3.66□□□□□ -1.82
FOXC1Q12948 OR56A1-203ENST00000641900 8448 ntAPPRIS P1 BASIC3.66□□□□□ -1.82
FOXC1Q12948 MIR342-201ENST00000362212 99 ntBASIC3.66□□□□□ -1.82
FOXC1Q12948 RNU6-315P-201ENST00000362666 107 ntBASIC3.66□□□□□ -1.82
FOXC1Q12948 snoU2-30.2-201ENST00000362805 70 ntBASIC3.66□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 111 ms