Protein–RNA interactions for Protein: Q01955

COL4A3, Collagen alpha-3(IV) chain, humanhuman

Predictions only

Length 1,670 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3Q01955 AC117454.1-201ENST00000491120 168 ntBASIC2.6□□□□□ -1.99
COL4A3Q01955 AC092185.1-201ENST00000491371 97 ntBASIC2.6□□□□□ -1.99
COL4A3Q01955 RNU6-971P-201ENST00000516920 106 ntBASIC2.6□□□□□ -1.99
COL4A3Q01955 AC093331.1-201ENST00000521474 169 ntBASIC2.6□□□□□ -1.99
COL4A3Q01955 AL160262.1-201ENST00000522264 254 ntTSL 3 BASIC2.6□□□□□ -1.99
COL4A3Q01955 AC092138.2-201ENST00000563811 428 ntTSL 5 BASIC2.6□□□□□ -1.99
COL4A3Q01955 AC138625.2-201ENST00000563968 551 ntTSL 3 BASIC2.6□□□□□ -1.99
COL4A3Q01955 RPL30P11-203ENST00000598995 310 ntBASIC2.6□□□□□ -1.99
COL4A3Q01955 Six3os1_7.1-201ENST00000621512 201 ntBASIC2.6□□□□□ -1.99
COL4A3Q01955 SYNE2-202ENST00000344113 21777 ntAPPRIS ALT2 TSL 1 (best) BASIC2.59□□□□□ -1.99
COL4A3Q01955 MINDY3-202ENST00000378036 2452 ntTSL 2 BASIC2.59□□□□□ -1.99
COL4A3Q01955 AL136164.4-201ENST00000625013 2135 ntBASIC2.59□□□□□ -1.99
COL4A3Q01955 WDR49-201ENST00000308378 2594 ntAPPRIS P2 TSL 1 (best) BASIC2.59□□□□□ -1.99
COL4A3Q01955 SNORA20-201ENST00000384662 132 ntBASIC2.59□□□□□ -2
COL4A3Q01955 RNU6-383P-201ENST00000410864 94 ntBASIC2.59□□□□□ -2
COL4A3Q01955 AL731684.2-201ENST00000426839 333 ntTSL 5 BASIC2.59□□□□□ -2
COL4A3Q01955 AL353614.1-201ENST00000445631 206 ntTSL 5 BASIC2.59□□□□□ -2
COL4A3Q01955 RNU7-57P-201ENST00000459540 60 ntBASIC2.59□□□□□ -2
COL4A3Q01955 SNORA31.1-201ENST00000515993 133 ntBASIC2.59□□□□□ -2
COL4A3Q01955 SNORA31.5-201ENST00000516190 133 ntBASIC2.59□□□□□ -2
COL4A3Q01955 RNU6-1234P-201ENST00000516877 103 ntBASIC2.59□□□□□ -2
COL4A3Q01955 AL670379.2-201ENST00000604983 252 ntBASIC2.59□□□□□ -2
COL4A3Q01955 WARS-244ENST00000627608 123 ntTSL 5 BASIC2.59□□□□□ -2
COL4A3Q01955 MIR3658-201ENST00000636291 56 ntBASIC2.59□□□□□ -2
COL4A3Q01955 AL160287.1-202ENST00000638113 454 ntTSL 5 BASIC2.59□□□□□ -2
COL4A3Q01955 ZMYM2-203ENST00000382874 10139 ntAPPRIS P1 TSL 1 (best) BASIC2.58□□□□□ -2
COL4A3Q01955 RNU1-105P-201ENST00000363470 161 ntBASIC2.58□□□□□ -2
COL4A3Q01955 Y_RNA.172-201ENST00000363765 102 ntBASIC2.58□□□□□ -2
COL4A3Q01955 Y_RNA.261-201ENST00000364631 102 ntBASIC2.58□□□□□ -2
COL4A3Q01955 SNORD37.2-201ENST00000391075 66 ntBASIC2.58□□□□□ -2
COL4A3Q01955 RNA5SP354-201ENST00000391247 136 ntBASIC2.58□□□□□ -2
COL4A3Q01955 RNU6-321P-201ENST00000410912 106 ntBASIC2.58□□□□□ -2
COL4A3Q01955 EIF4EP4-201ENST00000424916 578 ntBASIC2.58□□□□□ -2
COL4A3Q01955 RNU7-14P-201ENST00000459331 62 ntBASIC2.58□□□□□ -2
COL4A3Q01955 PPP2R2B-IT1-201ENST00000505921 447 ntTSL 3 BASIC2.58□□□□□ -2
COL4A3Q01955 AC234781.5-201ENST00000508429 271 ntBASIC2.58□□□□□ -2
COL4A3Q01955 RNU6-561P-201ENST00000516222 102 ntBASIC2.58□□□□□ -2
COL4A3Q01955 RNU7-115P-201ENST00000516433 55 ntBASIC2.58□□□□□ -2
COL4A3Q01955 AC012413.1-201ENST00000521294 519 ntTSL 2 BASIC2.58□□□□□ -2
COL4A3Q01955 AC026894.1-202ENST00000533843 477 ntTSL 5 BASIC2.58□□□□□ -2
COL4A3Q01955 TUG1_4.1-201ENST00000619464 181 ntBASIC2.58□□□□□ -2
COL4A3Q01955 PALMD-205ENST00000615664 1844 ntTSL 5 BASIC2.58□□□□□ -2
COL4A3Q01955 ZNF107-203ENST00000395391 6094 ntTSL 1 (best) BASIC2.57□□□□□ -2
COL4A3Q01955 TSLP-202ENST00000379706 2411 ntTSL 1 (best) BASIC2.57□□□□□ -2
COL4A3Q01955 Y_RNA.353-201ENST00000365440 108 ntBASIC2.57□□□□□ -2
COL4A3Q01955 RNU6-80P-201ENST00000384195 107 ntBASIC2.57□□□□□ -2
COL4A3Q01955 SNORD14D-201ENST00000384390 87 ntBASIC2.57□□□□□ -2
COL4A3Q01955 MIR15B-201ENST00000385045 98 ntBASIC2.57□□□□□ -2
COL4A3Q01955 MIR29B2-201ENST00000385055 81 ntBASIC2.57□□□□□ -2
COL4A3Q01955 MIR27B-201ENST00000385129 97 ntBASIC2.57□□□□□ -2
COL4A3Q01955 MIR300-201ENST00000401138 83 ntBASIC2.57□□□□□ -2
COL4A3Q01955 AL359511.1-201ENST00000402970 211 ntBASIC2.57□□□□□ -2
COL4A3Q01955 SNORA36B-201ENST00000410438 131 ntBASIC2.57□□□□□ -2
COL4A3Q01955 SNORD65B-201ENST00000459126 73 ntBASIC2.57□□□□□ -2
COL4A3Q01955 MIR3646-201ENST00000578301 84 ntBASIC2.57□□□□□ -2
COL4A3Q01955 MIR4765-201ENST00000585007 77 ntBASIC2.57□□□□□ -2
COL4A3Q01955 POLR3GP1-201ENST00000594073 261 ntBASIC2.57□□□□□ -2
COL4A3Q01955 AC107294.3-201ENST00000609211 526 ntBASIC2.57□□□□□ -2
COL4A3Q01955 TP73-AS1.1-201ENST00000611447 161 ntBASIC2.57□□□□□ -2
COL4A3Q01955 AC068647.2-201ENST00000637380 353 ntBASIC2.57□□□□□ -2
COL4A3Q01955 DNAH8-202ENST00000359357 13864 ntAPPRIS ALT2 TSL 2 BASIC2.57□□□□□ -2
COL4A3Q01955 AC092881.1-201ENST00000638218 2733 ntBASIC2.57□□□□□ -2
COL4A3Q01955 AC100800.1-201ENST00000524252 2054 ntTSL 1 (best) BASIC2.57□□□□□ -2
COL4A3Q01955 MUC15-202ENST00000436318 3118 ntTSL 5 BASIC2.57□□□□□ -2
COL4A3Q01955 Y_RNA.127-201ENST00000363386 109 ntBASIC2.57□□□□□ -2
COL4A3Q01955 SNORD32B-201ENST00000364460 84 ntBASIC2.57□□□□□ -2
COL4A3Q01955 RNY3P5-201ENST00000384127 102 ntBASIC2.57□□□□□ -2
COL4A3Q01955 MIR767-201ENST00000390228 109 ntBASIC2.57□□□□□ -2
COL4A3Q01955 AL355796.1-201ENST00000406706 323 ntBASIC2.57□□□□□ -2
COL4A3Q01955 MIR1294-201ENST00000408503 142 ntBASIC2.57□□□□□ -2
COL4A3Q01955 AP001043.2-201ENST00000434589 288 ntTSL 3 BASIC2.57□□□□□ -2
COL4A3Q01955 LINC02534-201ENST00000446525 283 ntTSL 3 BASIC2.57□□□□□ -2
COL4A3Q01955 RNU6-1337P-201ENST00000516525 95 ntBASIC2.57□□□□□ -2
COL4A3Q01955 AC090138.1-201ENST00000524493 578 ntTSL 4 BASIC2.57□□□□□ -2
COL4A3Q01955 LINC02309-201ENST00000553679 207 ntTSL 3 BASIC2.57□□□□□ -2
COL4A3Q01955 ZFAT-AS1_2.1-201ENST00000613742 201 ntBASIC2.57□□□□□ -2
COL4A3Q01955 SLC27A2-203ENST00000544960 2025 ntTSL 2 BASIC2.56□□□□□ -2
COL4A3Q01955 OR5V1-217ENST00000641768 2763 ntAPPRIS P1 BASIC2.56□□□□□ -2
COL4A3Q01955 ROCK2-203ENST00000401753 4017 ntTSL 1 (best) BASIC2.56□□□□□ -2
COL4A3Q01955 KTN1-214ENST00000554507 2057 ntTSL 1 (best) BASIC2.56□□□□□ -2
COL4A3Q01955 AC009487.4-201ENST00000624969 3585 ntBASIC2.56□□□□□ -2
COL4A3Q01955 C6orf10-201ENST00000375007 2125 ntAPPRIS ALT2 TSL 5 BASIC2.56□□□□□ -2
COL4A3Q01955 TSGA10-205ENST00000410001 3036 ntAPPRIS P2 TSL 1 (best) BASIC2.56□□□□□ -2
COL4A3Q01955 AC007256.1-201ENST00000392253 2765 ntBASIC2.56□□□□□ -2
COL4A3Q01955 Y_RNA.218-201ENST00000364218 104 ntBASIC2.56□□□□□ -2
COL4A3Q01955 Y_RNA.229-201ENST00000364347 113 ntBASIC2.56□□□□□ -2
COL4A3Q01955 MIR1283-1-201ENST00000408494 87 ntBASIC2.56□□□□□ -2
COL4A3Q01955 MIR449C-201ENST00000516047 92 ntBASIC2.56□□□□□ -2
COL4A3Q01955 AC103810.1-201ENST00000579873 453 ntBASIC2.56□□□□□ -2
COL4A3Q01955 AC012640.5-201ENST00000623897 319 ntBASIC2.56□□□□□ -2
COL4A3Q01955 SYT14-208ENST00000637265 13567 ntTSL 5 BASIC2.56□□□□□ -2
COL4A3Q01955 MIER3-203ENST00000381213 5198 ntAPPRIS P3 TSL 1 (best) BASIC2.56□□□□□ -2
COL4A3Q01955 PARPBP-203ENST00000392911 1916 ntTSL 5 BASIC2.56□□□□□ -2
COL4A3Q01955 LRRC70-201ENST00000334994 2249 ntAPPRIS P1 TSL 1 (best) BASIC2.56□□□□□ -2
COL4A3Q01955 ANKRD20A9P-201ENST00000457997 2978 ntBASIC2.55□□□□□ -2
COL4A3Q01955 ZNF702P-202ENST00000434269 1966 ntBASIC2.55□□□□□ -2
COL4A3Q01955 Y_RNA.273-201ENST00000364703 102 ntBASIC2.55□□□□□ -2
COL4A3Q01955 RNU6-407P-201ENST00000365280 104 ntBASIC2.55□□□□□ -2
COL4A3Q01955 RNU6-643P-201ENST00000384018 107 ntBASIC2.55□□□□□ -2
COL4A3Q01955 SNORA20B-201ENST00000384220 132 ntBASIC2.55□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 128.5 ms