Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 Y_RNA.286-201ENST00000364813 102 ntBASIC2.07□□□□□ -2.08
HDAC4P56524 Y_RNA.462-201ENST00000384268 102 ntBASIC2.07□□□□□ -2.08
HDAC4P56524 TRAJ49-201ENST00000390488 56 ntAPPRIS P1 BASIC2.07□□□□□ -2.08
HDAC4P56524 AC023051.1-201ENST00000414098 876 ntTSL 5 BASIC2.07□□□□□ -2.08
HDAC4P56524 RPL21P38-201ENST00000418090 167 ntBASIC2.07□□□□□ -2.08
HDAC4P56524 AL158823.1-201ENST00000418441 478 ntBASIC2.07□□□□□ -2.08
HDAC4P56524 AC008134.1-201ENST00000420943 193 ntBASIC2.07□□□□□ -2.08
HDAC4P56524 IKZF2-209ENST00000442445 551 ntTSL 5 BASIC2.07□□□□□ -2.08
HDAC4P56524 RPL23AP6-201ENST00000446637 472 ntBASIC2.07□□□□□ -2.08
HDAC4P56524 RPL23AP3-201ENST00000453844 468 ntBASIC2.07□□□□□ -2.08
HDAC4P56524 MIR3935-201ENST00000583472 104 ntBASIC2.07□□□□□ -2.08
HDAC4P56524 AC005176.2-201ENST00000596933 147 ntBASIC2.07□□□□□ -2.08
HDAC4P56524 AL159152.1-201ENST00000635019 2587 ntBASIC2.07□□□□□ -2.08
HDAC4P56524 snoU2_19.2-201ENST00000363024 80 ntBASIC2.06□□□□□ -2.08
HDAC4P56524 RNU6-1309P-201ENST00000363305 108 ntBASIC2.06□□□□□ -2.08
HDAC4P56524 Y_RNA.230-201ENST00000364348 109 ntBASIC2.06□□□□□ -2.08
HDAC4P56524 RNU6-1175P-201ENST00000365200 107 ntBASIC2.06□□□□□ -2.08
HDAC4P56524 RNU6-102P-201ENST00000384485 104 ntBASIC2.06□□□□□ -2.08
HDAC4P56524 MIR215-201ENST00000384858 110 ntBASIC2.06□□□□□ -2.08
HDAC4P56524 AL355796.1-201ENST00000406706 323 ntBASIC2.06□□□□□ -2.08
HDAC4P56524 KRTAP25-1-201ENST00000416044 370 ntAPPRIS P1 BASIC2.06□□□□□ -2.08
HDAC4P56524 TTTY16-201ENST00000437686 192 ntTSL 1 (best) BASIC2.06□□□□□ -2.08
HDAC4P56524 HMGB3P17-201ENST00000504195 649 ntBASIC2.06□□□□□ -2.08
HDAC4P56524 SUMO2P18-201ENST00000518873 252 ntBASIC2.06□□□□□ -2.08
HDAC4P56524 MIR4299-201ENST00000577899 72 ntBASIC2.06□□□□□ -2.08
HDAC4P56524 AC022441.3-201ENST00000605737 136 ntBASIC2.06□□□□□ -2.08
HDAC4P56524 AC005828.6-201ENST00000606610 232 ntBASIC2.06□□□□□ -2.08
HDAC4P56524 U1.36-201ENST00000620684 176 ntBASIC2.06□□□□□ -2.08
HDAC4P56524 U6.115-201ENST00000636045 103 ntBASIC2.06□□□□□ -2.08
HDAC4P56524 SKIL-202ENST00000413427 2702 ntTSL 1 (best) BASIC2.05□□□□□ -2.08
HDAC4P56524 Y_RNA.19-201ENST00000362462 99 ntBASIC2.05□□□□□ -2.08
HDAC4P56524 Y_RNA.361-201ENST00000365515 120 ntBASIC2.05□□□□□ -2.08
HDAC4P56524 Y_RNA.446-201ENST00000384178 104 ntBASIC2.05□□□□□ -2.08
HDAC4P56524 TRAJ50-201ENST00000390487 60 ntAPPRIS P1 BASIC2.05□□□□□ -2.08
HDAC4P56524 MIR676-201ENST00000390702 67 ntBASIC2.05□□□□□ -2.08
HDAC4P56524 SNORA26.9-201ENST00000391322 122 ntBASIC2.05□□□□□ -2.08
HDAC4P56524 AL117342.1-201ENST00000404861 406 ntBASIC2.05□□□□□ -2.08
HDAC4P56524 RNU4-30P-201ENST00000410245 143 ntBASIC2.05□□□□□ -2.08
HDAC4P56524 AC073323.1-201ENST00000419832 451 ntTSL 2 BASIC2.05□□□□□ -2.08
HDAC4P56524 DYNLT3P2-201ENST00000442517 295 ntBASIC2.05□□□□□ -2.08
HDAC4P56524 LINC02540-201ENST00000455554 570 ntTSL 3 BASIC2.05□□□□□ -2.08
HDAC4P56524 RNU6-635P-201ENST00000516651 102 ntBASIC2.05□□□□□ -2.08
HDAC4P56524 AL356133.2-201ENST00000521572 371 ntTSL 3 BASIC2.05□□□□□ -2.08
HDAC4P56524 MIR376A1-201ENST00000616574 68 ntBASIC2.05□□□□□ -2.08
HDAC4P56524 AC006001.4-201ENST00000622243 395 ntBASIC2.05□□□□□ -2.08
HDAC4P56524 RNU6-1266P-201ENST00000362794 105 ntBASIC2.04□□□□□ -2.08
HDAC4P56524 SNORD115-30-201ENST00000364117 82 ntBASIC2.04□□□□□ -2.08
HDAC4P56524 Y_RNA.243-201ENST00000364481 109 ntBASIC2.04□□□□□ -2.08
HDAC4P56524 snosnR66.1-201ENST00000391095 99 ntBASIC2.04□□□□□ -2.08
HDAC4P56524 RNU2-54P-201ENST00000410299 190 ntBASIC2.04□□□□□ -2.08
HDAC4P56524 RNA5SP475-201ENST00000410568 110 ntBASIC2.04□□□□□ -2.08
HDAC4P56524 AL731563.1-201ENST00000442202 214 ntBASIC2.04□□□□□ -2.08
HDAC4P56524 ATP5J2P3-201ENST00000451550 258 ntBASIC2.04□□□□□ -2.08
HDAC4P56524 HSPE1P25-201ENST00000455484 251 ntBASIC2.04□□□□□ -2.08
HDAC4P56524 SNORD65B-201ENST00000459126 73 ntBASIC2.04□□□□□ -2.08
HDAC4P56524 RNA5SP57-201ENST00000459463 123 ntBASIC2.04□□□□□ -2.08
HDAC4P56524 PTPN22-203ENST00000460620 1794 ntTSL 1 (best) BASIC2.04□□□□□ -2.08
HDAC4P56524 AC093893.1-201ENST00000505781 510 ntTSL 5 BASIC2.04□□□□□ -2.08
HDAC4P56524 RNU6-496P-201ENST00000516145 99 ntBASIC2.04□□□□□ -2.08
HDAC4P56524 RNY3P15-201ENST00000516297 97 ntBASIC2.04□□□□□ -2.08
HDAC4P56524 RNU6-295P-201ENST00000516901 104 ntBASIC2.04□□□□□ -2.08
HDAC4P56524 Y_RNA.713-201ENST00000517013 96 ntBASIC2.04□□□□□ -2.08
HDAC4P56524 AP001001.1-201ENST00000532422 826 ntTSL 3 BASIC2.04□□□□□ -2.08
HDAC4P56524 MDM2-232ENST00000544561 213 ntTSL 5 BASIC2.04□□□□□ -2.08
HDAC4P56524 AC008269.2-201ENST00000561915 1105 ntBASIC2.04□□□□□ -2.08
HDAC4P56524 AC005786.1-201ENST00000588553 154 ntBASIC2.04□□□□□ -2.08
HDAC4P56524 PRR13P7-201ENST00000605538 430 ntBASIC2.04□□□□□ -2.08
HDAC4P56524 AC245060.5-201ENST00000610778 3293 ntBASIC2.04□□□□□ -2.08
HDAC4P56524 MCMDC2-207ENST00000492775 1831 ntTSL 1 (best) BASIC2.03□□□□□ -2.08
HDAC4P56524 AL356292.1-201ENST00000283110 373 ntBASIC2.03□□□□□ -2.08
HDAC4P56524 MIR337-201ENST00000362281 93 ntBASIC2.03□□□□□ -2.08
HDAC4P56524 Y_RNA.118-201ENST00000363300 101 ntBASIC2.03□□□□□ -2.08
HDAC4P56524 Y_RNA.287-201ENST00000364853 94 ntBASIC2.03□□□□□ -2.08
HDAC4P56524 RNU6-1310P-201ENST00000384153 107 ntBASIC2.03□□□□□ -2.08
HDAC4P56524 Y_RNA.508-201ENST00000384502 114 ntBASIC2.03□□□□□ -2.08
HDAC4P56524 Y_RNA.574-201ENST00000384766 95 ntBASIC2.03□□□□□ -2.08
HDAC4P56524 SUMO2P12-201ENST00000405924 140 ntBASIC2.03□□□□□ -2.08
HDAC4P56524 HMGN2P19-201ENST00000425149 265 ntBASIC2.03□□□□□ -2.08
HDAC4P56524 AC099677.2-201ENST00000436385 175 ntBASIC2.03□□□□□ -2.08
HDAC4P56524 AL354733.1-201ENST00000458016 476 ntTSL 3 BASIC2.03□□□□□ -2.08
HDAC4P56524 SNORA40.15-201ENST00000516884 107 ntBASIC2.03□□□□□ -2.08
HDAC4P56524 AL035078.1-202ENST00000531627 413 ntTSL 2 BASIC2.03□□□□□ -2.08
HDAC4P56524 AC112481.1-201ENST00000549669 901 ntTSL 2 BASIC2.03□□□□□ -2.08
HDAC4P56524 MIR4781-201ENST00000585250 76 ntBASIC2.03□□□□□ -2.08
HDAC4P56524 TP73-AS1.1-201ENST00000611447 161 ntBASIC2.03□□□□□ -2.08
HDAC4P56524 AL773524.1-201ENST00000614065 229 ntBASIC2.03□□□□□ -2.08
HDAC4P56524 ZNF355P-201ENST00000427301 3216 ntBASIC2.03□□□□□ -2.08
HDAC4P56524 Y_RNA.47-201ENST00000362697 108 ntBASIC2.02□□□□□ -2.09
HDAC4P56524 SNORD113-8-201ENST00000363497 74 ntBASIC2.02□□□□□ -2.09
HDAC4P56524 Y_RNA.152-201ENST00000363578 100 ntBASIC2.02□□□□□ -2.09
HDAC4P56524 Y_RNA.581-201ENST00000391017 97 ntBASIC2.02□□□□□ -2.09
HDAC4P56524 RNU6ATAC38P-201ENST00000408119 126 ntBASIC2.02□□□□□ -2.09
HDAC4P56524 RNU5A-5P-201ENST00000411054 116 ntBASIC2.02□□□□□ -2.09
HDAC4P56524 AC244636.1-201ENST00000421152 228 ntBASIC2.02□□□□□ -2.09
HDAC4P56524 RPL31P63-201ENST00000422565 375 ntBASIC2.02□□□□□ -2.09
HDAC4P56524 HMGN2P34-201ENST00000437647 269 ntBASIC2.02□□□□□ -2.09
HDAC4P56524 MTND3P2-201ENST00000438452 342 ntBASIC2.02□□□□□ -2.09
HDAC4P56524 RN7SL274P-201ENST00000492268 272 ntBASIC2.02□□□□□ -2.09
HDAC4P56524 AC011406.1-201ENST00000512440 370 ntBASIC2.02□□□□□ -2.09
HDAC4P56524 MTCO2P24-201ENST00000515611 426 ntBASIC2.02□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 116.5 ms