Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 RNU6-1187P-201ENST00000364771 110 ntBASIC1□□□□□ -2.25
MSH6P52701 TRAJ47-201ENST00000390490 57 ntAPPRIS P1 BASIC1□□□□□ -2.25
MSH6P52701 USMG5P1-201ENST00000425964 177 ntBASIC1□□□□□ -2.25
MSH6P52701 RNU6-496P-201ENST00000516145 99 ntBASIC1□□□□□ -2.25
MSH6P52701 RNU6-273P-201ENST00000516937 96 ntBASIC1□□□□□ -2.25
MSH6P52701 AC091144.1-201ENST00000519573 138 ntBASIC1□□□□□ -2.25
MSH6P52701 MIR8065-201ENST00000620577 100 ntBASIC1□□□□□ -2.25
MSH6P52701 MIR6866-201ENST00000638146 69 ntBASIC1□□□□□ -2.25
MSH6P52701 RNU6-1059P-201ENST00000363752 98 ntBASIC0.99□□□□□ -2.25
MSH6P52701 Y_RNA.318-201ENST00000365131 97 ntBASIC0.99□□□□□ -2.25
MSH6P52701 RNU4-12P-201ENST00000365233 139 ntBASIC0.99□□□□□ -2.25
MSH6P52701 SNORA12.1-201ENST00000390873 148 ntBASIC0.99□□□□□ -2.25
MSH6P52701 AC245047.3-201ENST00000429428 127 ntBASIC0.99□□□□□ -2.25
MSH6P52701 MTND3P23-201ENST00000431980 347 ntBASIC0.99□□□□□ -2.25
MSH6P52701 RNU7-94P-201ENST00000459576 63 ntBASIC0.99□□□□□ -2.25
MSH6P52701 RPL39P38-201ENST00000467018 153 ntBASIC0.99□□□□□ -2.25
MSH6P52701 AC069528.1-201ENST00000490344 705 ntTSL 3 BASIC0.99□□□□□ -2.25
MSH6P52701 RNU1-54P-201ENST00000517181 120 ntBASIC0.99□□□□□ -2.25
MSH6P52701 AL121579.1-201ENST00000555129 305 ntBASIC0.99□□□□□ -2.25
MSH6P52701 AC013244.2-201ENST00000603396 103 ntBASIC0.99□□□□□ -2.25
MSH6P52701 MIR6128-201ENST00000615528 109 ntBASIC0.99□□□□□ -2.25
MSH6P52701 AC006435.5-201ENST00000624486 112 ntBASIC0.99□□□□□ -2.25
MSH6P52701 Y_RNA.516-201ENST00000384541 124 ntBASIC0.98□□□□□ -2.25
MSH6P52701 PIGP-205ENST00000399103 656 ntAPPRIS P1 TSL 1 (best) BASIC0.98□□□□□ -2.25
MSH6P52701 AL356776.1-201ENST00000406574 447 ntBASIC0.98□□□□□ -2.25
MSH6P52701 AC121342.1-201ENST00000423914 550 ntTSL 3 BASIC0.98□□□□□ -2.25
MSH6P52701 AL589823.1-201ENST00000429577 183 ntBASIC0.98□□□□□ -2.25
MSH6P52701 AC097501.2-201ENST00000502668 305 ntTSL 5 BASIC0.98□□□□□ -2.25
MSH6P52701 AC010598.1-201ENST00000510378 103 ntBASIC0.98□□□□□ -2.25
MSH6P52701 RNU6-1114P-201ENST00000516022 107 ntBASIC0.98□□□□□ -2.25
MSH6P52701 APOOP3-201ENST00000536787 586 ntBASIC0.98□□□□□ -2.25
MSH6P52701 MIR5695-201ENST00000579717 85 ntBASIC0.98□□□□□ -2.25
MSH6P52701 AL162424.1-201ENST00000602325 221 ntBASIC0.98□□□□□ -2.25
MSH6P52701 AC012557.2-201ENST00000605919 418 ntBASIC0.98□□□□□ -2.25
MSH6P52701 AC009229.3-201ENST00000608056 282 ntBASIC0.98□□□□□ -2.25
MSH6P52701 hsa-mir-548d-1.1-201ENST00000636914 97 ntBASIC0.98□□□□□ -2.25
MSH6P52701 MIR3688-2-201ENST00000636963 87 ntBASIC0.98□□□□□ -2.25
MSH6P52701 MIR3662-201ENST00000637030 95 ntBASIC0.98□□□□□ -2.25
MSH6P52701 DEUP1-202ENST00000525646 1920 ntTSL 1 (best) BASIC0.98□□□□□ -2.25
MSH6P52701 Y_RNA.48-201ENST00000362710 103 ntBASIC0.97□□□□□ -2.25
MSH6P52701 Y_RNA.184-201ENST00000363884 108 ntBASIC0.97□□□□□ -2.25
MSH6P52701 Y_RNA.453-201ENST00000384223 109 ntBASIC0.97□□□□□ -2.25
MSH6P52701 SNORD116-4-201ENST00000384733 96 ntBASIC0.97□□□□□ -2.25
MSH6P52701 AL034345.1-201ENST00000407768 123 ntBASIC0.97□□□□□ -2.25
MSH6P52701 RNU6ATAC31P-201ENST00000408513 126 ntBASIC0.97□□□□□ -2.25
MSH6P52701 AL135923.1-201ENST00000413066 196 ntTSL 3 BASIC0.97□□□□□ -2.25
MSH6P52701 AC018511.2-201ENST00000413431 189 ntTSL 3 BASIC0.97□□□□□ -2.25
MSH6P52701 Y_RNA.683-201ENST00000516508 93 ntBASIC0.97□□□□□ -2.25
MSH6P52701 RN7SKP88-201ENST00000516847 250 ntBASIC0.97□□□□□ -2.25
MSH6P52701 MIR5701-3-201ENST00000578890 82 ntBASIC0.97□□□□□ -2.25
MSH6P52701 MIR5701-1-201ENST00000585138 82 ntBASIC0.97□□□□□ -2.25
MSH6P52701 MIR4438-201ENST00000585271 93 ntBASIC0.97□□□□□ -2.25
MSH6P52701 AC100812.1-201ENST00000607622 580 ntBASIC0.97□□□□□ -2.25
MSH6P52701 7SK.8-201ENST00000612110 250 ntBASIC0.97□□□□□ -2.25
MSH6P52701 7SK.11-201ENST00000615477 250 ntBASIC0.97□□□□□ -2.25
MSH6P52701 MIR5701-2-201ENST00000615634 82 ntBASIC0.97□□□□□ -2.25
MSH6P52701 MIR2909-201ENST00000617113 69 ntBASIC0.97□□□□□ -2.25
MSH6P52701 7SK.13-201ENST00000622040 250 ntBASIC0.97□□□□□ -2.25
MSH6P52701 Y_RNA.106-201ENST00000363189 100 ntBASIC0.96□□□□□ -2.26
MSH6P52701 LINC02541-201ENST00000427157 327 ntTSL 3 BASIC0.96□□□□□ -2.26
MSH6P52701 RNU6-329P-201ENST00000459618 107 ntBASIC0.96□□□□□ -2.26
MSH6P52701 AC117454.1-201ENST00000491120 168 ntBASIC0.96□□□□□ -2.26
MSH6P52701 AC010469.2-201ENST00000496412 480 ntBASIC0.96□□□□□ -2.26
MSH6P52701 AL133373.1-201ENST00000497098 94 ntBASIC0.96□□□□□ -2.26
MSH6P52701 RNU4-49P-201ENST00000516080 140 ntBASIC0.96□□□□□ -2.26
MSH6P52701 Y_RNA.706-201ENST00000516933 99 ntBASIC0.96□□□□□ -2.26
MSH6P52701 CYCSP23-201ENST00000519781 313 ntBASIC0.96□□□□□ -2.26
MSH6P52701 AC090617.3-201ENST00000573670 475 ntBASIC0.96□□□□□ -2.26
MSH6P52701 AC015845.1-201ENST00000579285 335 ntTSL 3 BASIC0.96□□□□□ -2.26
MSH6P52701 AL021879.1-201ENST00000611756 288 ntBASIC0.96□□□□□ -2.26
MSH6P52701 AC090517.2-201ENST00000614966 680 ntBASIC0.96□□□□□ -2.26
MSH6P52701 AL513423.1-201ENST00000621695 132 ntBASIC0.96□□□□□ -2.26
MSH6P52701 AC099654.5-201ENST00000636479 350 ntBASIC0.96□□□□□ -2.26
MSH6P52701 RNU6-1145P-201ENST00000384246 107 ntBASIC0.96□□□□□ -2.26
MSH6P52701 MIR329-1-201ENST00000385028 80 ntBASIC0.96□□□□□ -2.26
MSH6P52701 SNORD115-47-201ENST00000391226 86 ntBASIC0.96□□□□□ -2.26
MSH6P52701 EIF1P2-201ENST00000428233 350 ntBASIC0.96□□□□□ -2.26
MSH6P52701 MRPS10P1-201ENST00000448483 130 ntBASIC0.96□□□□□ -2.26
MSH6P52701 AL357873.1-201ENST00000449215 282 ntTSL 3 BASIC0.96□□□□□ -2.26
MSH6P52701 MTND5P5-201ENST00000503764 376 ntBASIC0.96□□□□□ -2.26
MSH6P52701 RNU6-165P-201ENST00000517170 99 ntBASIC0.96□□□□□ -2.26
MSH6P52701 AC023157.2-201ENST00000540596 141 ntBASIC0.96□□□□□ -2.26
MSH6P52701 AC093023.1-201ENST00000547375 507 ntBASIC0.96□□□□□ -2.26
MSH6P52701 AC096558.1-203ENST00000550516 574 ntTSL 3 BASIC0.96□□□□□ -2.26
MSH6P52701 AL513534.2-201ENST00000603836 250 ntBASIC0.96□□□□□ -2.26
MSH6P52701 AC093783.1-201ENST00000612976 329 ntBASIC0.96□□□□□ -2.26
MSH6P52701 AC073349.3-201ENST00000617616 186 ntBASIC0.96□□□□□ -2.26
MSH6P52701 LINC01068-202ENST00000620874 626 ntTSL 3 BASIC0.96□□□□□ -2.26
MSH6P52701 RNU6-222P-201ENST00000362438 107 ntBASIC0.95□□□□□ -2.26
MSH6P52701 AL355796.1-201ENST00000406706 323 ntBASIC0.95□□□□□ -2.26
MSH6P52701 ELOCP21-201ENST00000412558 336 ntBASIC0.95□□□□□ -2.26
MSH6P52701 USP9YP16-201ENST00000430287 407 ntBASIC0.95□□□□□ -2.26
MSH6P52701 USP9YP23-201ENST00000455085 407 ntBASIC0.95□□□□□ -2.26
MSH6P52701 MTND5P16-201ENST00000460269 1703 ntBASIC0.95□□□□□ -2.26
MSH6P52701 RPS27P22-201ENST00000478056 241 ntBASIC0.95□□□□□ -2.26
MSH6P52701 AC026782.1-201ENST00000512952 449 ntBASIC0.95□□□□□ -2.26
MSH6P52701 AC046134.1-201ENST00000514454 666 ntBASIC0.95□□□□□ -2.26
MSH6P52701 SNORD116-28-201ENST00000516123 91 ntBASIC0.95□□□□□ -2.26
MSH6P52701 Y_RNA.682-201ENST00000516457 100 ntBASIC0.95□□□□□ -2.26
MSH6P52701 RNU6-107P-201ENST00000516643 102 ntBASIC0.95□□□□□ -2.26
Retrieved 100 of 98,524 protein–RNA pairs in 104.3 ms