Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 SNHG14-219ENST00000553134 470 ntTSL 2 BASIC2□□□□□ -2.09
CTCFP49711 MIR3122-201ENST00000577243 73 ntBASIC2□□□□□ -2.09
CTCFP49711 MIR4421-201ENST00000578133 69 ntBASIC2□□□□□ -2.09
CTCFP49711 5S_rRNA.19-201ENST00000612131 110 ntBASIC2□□□□□ -2.09
CTCFP49711 5S_rRNA.18-201ENST00000621941 110 ntBASIC2□□□□□ -2.09
CTCFP49711 AL606534.2-204ENST00000635008 178 ntBASIC2□□□□□ -2.09
CTCFP49711 KTN1-207ENST00000438792 4449 ntAPPRIS ALT2 TSL 5 BASIC2□□□□□ -2.09
CTCFP49711 FSD1L-201ENST00000374707 7062 ntTSL 1 (best) BASIC2□□□□□ -2.09
CTCFP49711 MIR96-201ENST00000362288 78 ntBASIC1.99□□□□□ -2.09
CTCFP49711 Y_RNA.27-201ENST00000362540 103 ntBASIC1.99□□□□□ -2.09
CTCFP49711 Y_RNA.39-201ENST00000362620 98 ntBASIC1.99□□□□□ -2.09
CTCFP49711 SNORA33-201ENST00000363664 130 ntBASIC1.99□□□□□ -2.09
CTCFP49711 RNU1-96P-201ENST00000364163 162 ntBASIC1.99□□□□□ -2.09
CTCFP49711 Y_RNA.813-201ENST00000364639 102 ntBASIC1.99□□□□□ -2.09
CTCFP49711 RNU6-60P-201ENST00000364792 103 ntBASIC1.99□□□□□ -2.09
CTCFP49711 RNU6-1240P-201ENST00000365155 104 ntBASIC1.99□□□□□ -2.09
CTCFP49711 Y_RNA.498-201ENST00000384460 102 ntBASIC1.99□□□□□ -2.09
CTCFP49711 RPL31P63-201ENST00000422565 375 ntBASIC1.99□□□□□ -2.09
CTCFP49711 CST2P1-201ENST00000425770 87 ntBASIC1.99□□□□□ -2.09
CTCFP49711 RAB28P5-201ENST00000427490 651 ntBASIC1.99□□□□□ -2.09
CTCFP49711 TRAPPC2P8-201ENST00000440676 396 ntBASIC1.99□□□□□ -2.09
CTCFP49711 TRAPPC2P7-201ENST00000509650 231 ntBASIC1.99□□□□□ -2.09
CTCFP49711 RNU1-92P-201ENST00000517017 135 ntBASIC1.99□□□□□ -2.09
CTCFP49711 MIR5188-201ENST00000583467 113 ntBASIC1.99□□□□□ -2.09
CTCFP49711 AC007485.1-201ENST00000616755 206 ntBASIC1.99□□□□□ -2.09
CTCFP49711 U6.92-201ENST00000636464 89 ntBASIC1.99□□□□□ -2.09
CTCFP49711 ATP11C-202ENST00000361648 6010 ntAPPRIS ALT2 TSL 1 (best) BASIC1.98□□□□□ -2.09
CTCFP49711 Y_RNA.31-201ENST00000362574 102 ntBASIC1.98□□□□□ -2.09
CTCFP49711 RNU6-961P-201ENST00000363893 105 ntBASIC1.98□□□□□ -2.09
CTCFP49711 RNU6-53P-201ENST00000365367 106 ntBASIC1.98□□□□□ -2.09
CTCFP49711 RNU6-926P-201ENST00000384075 107 ntBASIC1.98□□□□□ -2.09
CTCFP49711 RNU6-474P-201ENST00000384243 107 ntBASIC1.98□□□□□ -2.09
CTCFP49711 RNU6-308P-201ENST00000390957 107 ntBASIC1.98□□□□□ -2.09
CTCFP49711 SNORD78.2-201ENST00000391076 69 ntBASIC1.98□□□□□ -2.09
CTCFP49711 RNU6ATAC20P-201ENST00000408436 127 ntBASIC1.98□□□□□ -2.09
CTCFP49711 AC005534.2-201ENST00000431047 433 ntBASIC1.98□□□□□ -2.09
CTCFP49711 AC245047.4-201ENST00000433189 144 ntBASIC1.98□□□□□ -2.09
CTCFP49711 AC092813.2-201ENST00000434540 399 ntTSL 3 BASIC1.98□□□□□ -2.09
CTCFP49711 FAR2P3-204ENST00000434661 444 ntTSL 2 BASIC1.98□□□□□ -2.09
CTCFP49711 AC010469.2-201ENST00000496412 480 ntBASIC1.98□□□□□ -2.09
CTCFP49711 LINC02514-201ENST00000509058 498 ntTSL 3 BASIC1.98□□□□□ -2.09
CTCFP49711 SNORA44.1-201ENST00000517031 108 ntBASIC1.98□□□□□ -2.09
CTCFP49711 AL161670.1-201ENST00000554348 137 ntBASIC1.98□□□□□ -2.09
CTCFP49711 MIR3198-2-201ENST00000577868 80 ntBASIC1.98□□□□□ -2.09
CTCFP49711 AC015818.4-201ENST00000580931 353 ntTSL 5 BASIC1.98□□□□□ -2.09
CTCFP49711 AC069114.2-201ENST00000604699 304 ntBASIC1.98□□□□□ -2.09
CTCFP49711 CYLC2-202ENST00000487798 2053 ntAPPRIS P1 TSL 5 BASIC1.98□□□□□ -2.09
CTCFP49711 ZNF209P-201ENST00000593450 2304 ntBASIC1.97□□□□□ -2.09
CTCFP49711 Y_RNA.80-201ENST00000362996 102 ntBASIC1.97□□□□□ -2.09
CTCFP49711 RNU6-112P-201ENST00000363599 104 ntBASIC1.97□□□□□ -2.09
CTCFP49711 Y_RNA.485-201ENST00000384395 102 ntBASIC1.97□□□□□ -2.09
CTCFP49711 RNU6-417P-201ENST00000384712 107 ntBASIC1.97□□□□□ -2.09
CTCFP49711 NCKAP5-IT1-201ENST00000416437 554 ntTSL 4 BASIC1.97□□□□□ -2.09
CTCFP49711 MCFD2P1-201ENST00000417812 300 ntBASIC1.97□□□□□ -2.09
CTCFP49711 PMCHL1-202ENST00000423102 261 ntBASIC1.97□□□□□ -2.09
CTCFP49711 FCF1P4-201ENST00000448326 183 ntBASIC1.97□□□□□ -2.09
CTCFP49711 AC010409.1-201ENST00000487382 476 ntBASIC1.97□□□□□ -2.09
CTCFP49711 AC108037.1-201ENST00000514103 423 ntTSL 3 BASIC1.97□□□□□ -2.09
CTCFP49711 RNU6-408P-201ENST00000515910 100 ntBASIC1.97□□□□□ -2.09
CTCFP49711 RNU6-1146P-201ENST00000516282 102 ntBASIC1.97□□□□□ -2.09
CTCFP49711 SNORA40.14-201ENST00000516543 86 ntBASIC1.97□□□□□ -2.09
CTCFP49711 MIR151B-201ENST00000584249 96 ntBASIC1.97□□□□□ -2.09
CTCFP49711 AC006157.1-201ENST00000611750 366 ntBASIC1.97□□□□□ -2.09
CTCFP49711 AL138825.1-201ENST00000618587 192 ntBASIC1.97□□□□□ -2.09
CTCFP49711 MIR3674-201ENST00000636576 68 ntBASIC1.97□□□□□ -2.09
CTCFP49711 SYT14-201ENST00000367015 5094 ntAPPRIS ALT2 TSL 1 (best) BASIC1.96□□□□□ -2.09
CTCFP49711 Y_RNA.68-201ENST00000362881 102 ntBASIC1.96□□□□□ -2.1
CTCFP49711 Y_RNA.138-201ENST00000363462 102 ntBASIC1.96□□□□□ -2.1
CTCFP49711 RNU6-454P-201ENST00000364292 107 ntBASIC1.96□□□□□ -2.1
CTCFP49711 RNU1-93P-201ENST00000364704 169 ntBASIC1.96□□□□□ -2.1
CTCFP49711 Y_RNA.445-201ENST00000384168 102 ntBASIC1.96□□□□□ -2.1
CTCFP49711 RNU6-296P-201ENST00000384608 107 ntBASIC1.96□□□□□ -2.1
CTCFP49711 MRPL35P1-201ENST00000404272 572 ntBASIC1.96□□□□□ -2.1
CTCFP49711 MIR1253-201ENST00000408273 105 ntBASIC1.96□□□□□ -2.1
CTCFP49711 MTCO3P19-201ENST00000415864 321 ntBASIC1.96□□□□□ -2.1
CTCFP49711 AL160004.2-201ENST00000432935 350 ntBASIC1.96□□□□□ -2.1
CTCFP49711 MTND4P19-201ENST00000446659 478 ntBASIC1.96□□□□□ -2.1
CTCFP49711 SNORD65B-201ENST00000459126 73 ntBASIC1.96□□□□□ -2.1
CTCFP49711 RN7SKP295-201ENST00000517264 153 ntBASIC1.96□□□□□ -2.1
CTCFP49711 RRM2B-207ENST00000519962 201 ntTSL 1 (best) BASIC1.96□□□□□ -2.1
CTCFP49711 AC055872.1-201ENST00000570978 278 ntBASIC1.96□□□□□ -2.1
CTCFP49711 AC103810.8-201ENST00000607347 118 ntBASIC1.96□□□□□ -2.1
CTCFP49711 AC011476.5-201ENST00000615594 130 ntBASIC1.96□□□□□ -2.1
CTCFP49711 AL353770.2-201ENST00000620024 78 ntBASIC1.96□□□□□ -2.1
CTCFP49711 CYSLTR1-201ENST00000373304 2576 ntAPPRIS P1 TSL 1 (best) BASIC1.95□□□□□ -2.1
CTCFP49711 RNU6-1266P-201ENST00000362794 105 ntBASIC1.95□□□□□ -2.1
CTCFP49711 MIR520E-201ENST00000384867 87 ntBASIC1.95□□□□□ -2.1
CTCFP49711 SNORA67.6-201ENST00000391093 99 ntBASIC1.95□□□□□ -2.1
CTCFP49711 RPS29P1-201ENST00000465274 159 ntBASIC1.95□□□□□ -2.1
CTCFP49711 AC008834.1-201ENST00000511612 175 ntBASIC1.95□□□□□ -2.1
CTCFP49711 NKAIN2-205ENST00000546092 148 ntTSL 5 BASIC1.95□□□□□ -2.1
CTCFP49711 MIR4659A-201ENST00000580269 81 ntBASIC1.95□□□□□ -2.1
CTCFP49711 AC022432.1-201ENST00000595739 310 ntBASIC1.95□□□□□ -2.1
CTCFP49711 ICE2P2-201ENST00000483823 2787 ntBASIC1.94□□□□□ -2.1
CTCFP49711 RNU6-1019P-201ENST00000364424 107 ntBASIC1.94□□□□□ -2.1
CTCFP49711 RNA5SP467-201ENST00000391274 118 ntBASIC1.94□□□□□ -2.1
CTCFP49711 AL592431.2-201ENST00000422198 171 ntTSL 3 BASIC1.94□□□□□ -2.1
CTCFP49711 SDAD1P3-201ENST00000427380 333 ntBASIC1.94□□□□□ -2.1
CTCFP49711 LINC02238-202ENST00000436262 320 ntTSL 3 BASIC1.94□□□□□ -2.1
CTCFP49711 Y_RNA.631-201ENST00000459607 101 ntBASIC1.94□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 116.2 ms