Protein–RNA interactions for Protein: P48436

SOX9, Transcription factor SOX-9, humanhuman

Predictions only

Length 509 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX9P48436 RNU6-969P-201ENST00000383900 105 ntBASIC2.99□□□□□ -1.93
SOX9P48436 Y_RNA.464-201ENST00000384282 110 ntBASIC2.99□□□□□ -1.93
SOX9P48436 MIR29C-201ENST00000385231 88 ntBASIC2.99□□□□□ -1.93
SOX9P48436 RPL21P3-201ENST00000395517 478 ntBASIC2.99□□□□□ -1.93
SOX9P48436 AL592431.2-201ENST00000422198 171 ntTSL 3 BASIC2.99□□□□□ -1.93
SOX9P48436 YWHAEP4-201ENST00000505390 198 ntBASIC2.99□□□□□ -1.93
SOX9P48436 RNU6-1219P-201ENST00000516143 112 ntBASIC2.99□□□□□ -1.93
SOX9P48436 CHORDC1-205ENST00000529726 4805 ntTSL 2 BASIC2.99□□□□□ -1.93
SOX9P48436 DMD-203ENST00000357033 13956 ntAPPRIS P3 TSL 1 (best) BASIC2.99□□□□□ -1.93
SOX9P48436 FRS2-201ENST00000397997 6550 ntAPPRIS P1 TSL 5 BASIC2.98□□□□□ -1.93
SOX9P48436 ROS1-202ENST00000368508 7435 ntAPPRIS P2 TSL 1 (best) BASIC2.98□□□□□ -1.93
SOX9P48436 OXR1-215ENST00000531443 3599 ntTSL 5 BASIC2.98□□□□□ -1.93
SOX9P48436 CC2D2B-210ENST00000636965 3247 ntTSL 5 BASIC2.98□□□□□ -1.93
SOX9P48436 NBPF20-202ENST00000392971 18450 ntAPPRIS P2 TSL 5 BASIC2.98□□□□□ -1.93
SOX9P48436 SNORD114-6-201ENST00000364393 72 ntBASIC2.98□□□□□ -1.93
SOX9P48436 SNORA72-201ENST00000384339 132 ntBASIC2.98□□□□□ -1.93
SOX9P48436 MIR515-2-201ENST00000384883 83 ntBASIC2.98□□□□□ -1.93
SOX9P48436 MIR515-1-201ENST00000384884 83 ntBASIC2.98□□□□□ -1.93
SOX9P48436 RNU6-381P-201ENST00000391259 108 ntBASIC2.98□□□□□ -1.93
SOX9P48436 PCNPP3-201ENST00000393579 471 ntBASIC2.98□□□□□ -1.93
SOX9P48436 EBAG9P1-201ENST00000418955 543 ntBASIC2.98□□□□□ -1.93
SOX9P48436 RNU6-437P-201ENST00000459408 95 ntBASIC2.98□□□□□ -1.93
SOX9P48436 RNU1-142P-201ENST00000516682 145 ntBASIC2.98□□□□□ -1.93
SOX9P48436 AL353149.1-201ENST00000610667 244 ntBASIC2.98□□□□□ -1.93
SOX9P48436 DSCR8-208ENST00000614538 403 ntAPPRIS P5 TSL 5 BASIC2.98□□□□□ -1.93
SOX9P48436 EFR3A-202ENST00000519656 5247 ntTSL 1 (best) BASIC2.98□□□□□ -1.93
SOX9P48436 AC093831.2-201ENST00000624393 3427 ntBASIC2.98□□□□□ -1.93
SOX9P48436 ZMYM1-201ENST00000359858 4175 ntAPPRIS P1 TSL 1 (best) BASIC2.98□□□□□ -1.93
SOX9P48436 WWP1-201ENST00000265428 3362 ntAPPRIS P1 TSL 1 (best) BASIC2.97□□□□□ -1.93
SOX9P48436 MUC15-202ENST00000436318 3118 ntTSL 5 BASIC2.97□□□□□ -1.93
SOX9P48436 RNA5SP493-201ENST00000364115 91 ntBASIC2.97□□□□□ -1.93
SOX9P48436 LINC02532-205ENST00000430094 628 ntTSL 5 BASIC2.97□□□□□ -1.93
SOX9P48436 AC116666.1-201ENST00000453915 551 ntTSL 5 BASIC2.97□□□□□ -1.93
SOX9P48436 SNORD109B-201ENST00000458961 67 ntBASIC2.97□□□□□ -1.93
SOX9P48436 SNORD109A-201ENST00000459128 67 ntBASIC2.97□□□□□ -1.93
SOX9P48436 RNU7-99P-201ENST00000516271 62 ntBASIC2.97□□□□□ -1.93
SOX9P48436 MIR3945-201ENST00000581853 98 ntBASIC2.97□□□□□ -1.93
SOX9P48436 AC073413.2-201ENST00000604332 360 ntBASIC2.97□□□□□ -1.93
SOX9P48436 MIR338-201ENST00000636369 67 ntBASIC2.97□□□□□ -1.93
SOX9P48436 RNU6-851P-201ENST00000384565 107 ntBASIC2.96□□□□□ -1.94
SOX9P48436 MIR520G-201ENST00000385064 90 ntBASIC2.96□□□□□ -1.94
SOX9P48436 AL512604.1-201ENST00000404812 257 ntBASIC2.96□□□□□ -1.94
SOX9P48436 MIR548M-201ENST00000408260 86 ntBASIC2.96□□□□□ -1.94
SOX9P48436 RN7SKP51-201ENST00000410781 304 ntBASIC2.96□□□□□ -1.94
SOX9P48436 AC063976.3-201ENST00000426849 329 ntBASIC2.96□□□□□ -1.94
SOX9P48436 AC018634.1-201ENST00000437554 401 ntBASIC2.96□□□□□ -1.94
SOX9P48436 SUMO1P3-201ENST00000439961 304 ntBASIC2.96□□□□□ -1.94
SOX9P48436 RPS27AP9-201ENST00000477681 438 ntBASIC2.96□□□□□ -1.94
SOX9P48436 AC074198.2-201ENST00000508153 258 ntBASIC2.96□□□□□ -1.94
SOX9P48436 MIR4744-201ENST00000581563 82 ntBASIC2.96□□□□□ -1.94
SOX9P48436 AL031274.2-201ENST00000599419 203 ntBASIC2.96□□□□□ -1.94
SOX9P48436 OSBPL1A-217ENST00000638614 84 ntTSL 5 BASIC2.96□□□□□ -1.94
SOX9P48436 SENP7-205ENST00000394091 4434 ntAPPRIS ALT2 TSL 1 (best) BASIC2.96□□□□□ -1.94
SOX9P48436 PIK3C2G-202ENST00000433979 4840 ntAPPRIS P1 TSL 5 BASIC2.95□□□□□ -1.94
SOX9P48436 DNAH12-208ENST00000495027 12146 ntAPPRIS P1 TSL 5 BASIC2.95□□□□□ -1.94
SOX9P48436 SNORA9.2-201ENST00000365361 133 ntBASIC2.95□□□□□ -1.94
SOX9P48436 SNORA11.4-201ENST00000408823 129 ntBASIC2.95□□□□□ -1.94
SOX9P48436 RNU6-383P-201ENST00000410864 94 ntBASIC2.95□□□□□ -1.94
SOX9P48436 AC091133.1-201ENST00000435491 483 ntTSL 3 BASIC2.95□□□□□ -1.94
SOX9P48436 AL353742.1-201ENST00000453455 224 ntTSL 3 BASIC2.95□□□□□ -1.94
SOX9P48436 RNU6-1007P-201ENST00000516586 107 ntBASIC2.95□□□□□ -1.94
SOX9P48436 MRPS18CP4-201ENST00000535821 231 ntBASIC2.95□□□□□ -1.94
SOX9P48436 NEB-220ENST00000618972 26307 ntAPPRIS ALT2 TSL 5 BASIC2.95□□□□□ -1.94
SOX9P48436 AF165147.1-201ENST00000433310 6103 ntTSL 2 BASIC2.95□□□□□ -1.94
SOX9P48436 ANKRD36BP1-201ENST00000358576 1779 ntBASIC2.95□□□□□ -1.94
SOX9P48436 SMARCAD1-201ENST00000354268 4912 ntAPPRIS P3 TSL 1 (best) BASIC2.94□□□□□ -1.94
SOX9P48436 PRKACB-207ENST00000394838 4294 ntTSL 5 BASIC2.94□□□□□ -1.94
SOX9P48436 RNA5SP432-201ENST00000362480 116 ntBASIC2.94□□□□□ -1.94
SOX9P48436 RNU1-96P-201ENST00000364163 162 ntBASIC2.94□□□□□ -1.94
SOX9P48436 RNU4-41P-201ENST00000364426 143 ntBASIC2.94□□□□□ -1.94
SOX9P48436 RNU6-312P-201ENST00000364629 107 ntBASIC2.94□□□□□ -1.94
SOX9P48436 Y_RNA.357-201ENST00000365487 109 ntBASIC2.94□□□□□ -1.94
SOX9P48436 RNU1-148P-201ENST00000384472 162 ntBASIC2.94□□□□□ -1.94
SOX9P48436 MIR196B-201ENST00000384852 84 ntBASIC2.94□□□□□ -1.94
SOX9P48436 MIR616-201ENST00000385293 97 ntBASIC2.94□□□□□ -1.94
SOX9P48436 RNA5SP467-201ENST00000391274 118 ntBASIC2.94□□□□□ -1.94
SOX9P48436 Y_RNA.621-201ENST00000411065 96 ntBASIC2.94□□□□□ -1.94
SOX9P48436 RNA5SP344-201ENST00000411081 104 ntBASIC2.94□□□□□ -1.94
SOX9P48436 RPL32P35-201ENST00000415214 394 ntBASIC2.94□□□□□ -1.94
SOX9P48436 CST2P1-201ENST00000425770 87 ntBASIC2.94□□□□□ -1.94
SOX9P48436 RAB6C-AS1-202ENST00000433431 123 ntBASIC2.94□□□□□ -1.94
SOX9P48436 LINC02534-201ENST00000446525 283 ntTSL 3 BASIC2.94□□□□□ -1.94
SOX9P48436 RPS4XP11-201ENST00000446897 772 ntBASIC2.94□□□□□ -1.94
SOX9P48436 AC245047.8-201ENST00000456455 284 ntBASIC2.94□□□□□ -1.94
SOX9P48436 RN7SL75P-201ENST00000461926 281 ntBASIC2.94□□□□□ -1.94
SOX9P48436 RNA5SP217-201ENST00000515959 91 ntBASIC2.94□□□□□ -1.94
SOX9P48436 RNU6-1096P-201ENST00000517089 102 ntBASIC2.94□□□□□ -1.94
SOX9P48436 AC012413.1-201ENST00000521294 519 ntTSL 2 BASIC2.94□□□□□ -1.94
SOX9P48436 MIR4658-201ENST00000584344 65 ntBASIC2.94□□□□□ -1.94
SOX9P48436 AL365434.2-201ENST00000607979 234 ntBASIC2.94□□□□□ -1.94
SOX9P48436 HDX-206ENST00000506585 6158 ntTSL 2 BASIC2.94□□□□□ -1.94
SOX9P48436 GCNT4-201ENST00000322348 5554 ntAPPRIS P1 BASIC2.93□□□□□ -1.94
SOX9P48436 SLC30A6-202ENST00000357055 4758 ntTSL 2 BASIC2.93□□□□□ -1.94
SOX9P48436 ZNF280D-204ENST00000558320 3666 ntTSL 1 (best) BASIC2.93□□□□□ -1.94
SOX9P48436 KLRA1P-203ENST00000535939 2353 ntTSL 1 (best) BASIC2.93□□□□□ -1.94
SOX9P48436 Y_RNA.75-201ENST00000362927 97 ntBASIC2.93□□□□□ -1.94
SOX9P48436 snoU2_19.4-201ENST00000364329 80 ntBASIC2.93□□□□□ -1.94
SOX9P48436 U8.9-201ENST00000365667 134 ntBASIC2.93□□□□□ -1.94
SOX9P48436 RNA5SP492-201ENST00000411330 114 ntBASIC2.93□□□□□ -1.94
SOX9P48436 AL359195.1-201ENST00000416657 339 ntTSL 3 BASIC2.93□□□□□ -1.94
Retrieved 100 of 98,524 protein–RNA pairs in 104.5 ms