Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 RNU6-1041P-201ENST00000516254 102 ntBASIC2.03□□□□□ -2.08
PTPN9P43378 RNU6-635P-201ENST00000516651 102 ntBASIC2.03□□□□□ -2.08
PTPN9P43378 AC090398.1-202ENST00000580403 457 ntTSL 2 BASIC2.03□□□□□ -2.08
PTPN9P43378 U6.73-201ENST00000619194 103 ntBASIC2.03□□□□□ -2.08
PTPN9P43378 CALCRL-201ENST00000392370 5155 ntAPPRIS P1 TSL 1 (best) BASIC2.03□□□□□ -2.09
PTPN9P43378 XRCC4-205ENST00000511817 1636 ntAPPRIS P4 TSL 1 (best) BASIC2.02□□□□□ -2.09
PTPN9P43378 KTN1-207ENST00000438792 4449 ntAPPRIS ALT2 TSL 5 BASIC2.02□□□□□ -2.09
PTPN9P43378 SLCO1B3-202ENST00000381545 2805 ntAPPRIS P1 TSL 2 BASIC2.02□□□□□ -2.09
PTPN9P43378 SNORD81.1-201ENST00000363064 77 ntBASIC2.02□□□□□ -2.09
PTPN9P43378 RNU6-713P-201ENST00000384761 107 ntBASIC2.02□□□□□ -2.09
PTPN9P43378 MIR597-201ENST00000384968 97 ntBASIC2.02□□□□□ -2.09
PTPN9P43378 MIR17-201ENST00000385012 84 ntBASIC2.02□□□□□ -2.09
PTPN9P43378 AL031003.1-201ENST00000404229 172 ntBASIC2.02□□□□□ -2.09
PTPN9P43378 RNU2-61P-201ENST00000411069 191 ntBASIC2.02□□□□□ -2.09
PTPN9P43378 AL592431.2-201ENST00000422198 171 ntTSL 3 BASIC2.02□□□□□ -2.09
PTPN9P43378 AL121890.1-201ENST00000435457 205 ntBASIC2.02□□□□□ -2.09
PTPN9P43378 AC069023.1-201ENST00000442231 221 ntTSL 3 BASIC2.02□□□□□ -2.09
PTPN9P43378 DYNLT3P2-201ENST00000442517 295 ntBASIC2.02□□□□□ -2.09
PTPN9P43378 MRPS10P1-201ENST00000448483 130 ntBASIC2.02□□□□□ -2.09
PTPN9P43378 MTND4LP30-201ENST00000454092 297 ntBASIC2.02□□□□□ -2.09
PTPN9P43378 MTATP8P1-201ENST00000467115 207 ntBASIC2.02□□□□□ -2.09
PTPN9P43378 YWHAEP4-201ENST00000505390 198 ntBASIC2.02□□□□□ -2.09
PTPN9P43378 RNU6-436P-201ENST00000516171 114 ntBASIC2.02□□□□□ -2.09
PTPN9P43378 PPP2R5A-205ENST00000537030 1719 ntTSL 2 BASIC2.02□□□□□ -2.09
PTPN9P43378 RNU6-1309P-201ENST00000363305 108 ntBASIC2.01□□□□□ -2.09
PTPN9P43378 RNU1-96P-201ENST00000364163 162 ntBASIC2.01□□□□□ -2.09
PTPN9P43378 RNU11-5P-201ENST00000391216 129 ntBASIC2.01□□□□□ -2.09
PTPN9P43378 RNU6-710P-201ENST00000410424 105 ntBASIC2.01□□□□□ -2.09
PTPN9P43378 AC069079.1-201ENST00000419889 400 ntTSL 3 BASIC2.01□□□□□ -2.09
PTPN9P43378 AC096920.1-201ENST00000423991 241 ntBASIC2.01□□□□□ -2.09
PTPN9P43378 MTCYBP9-201ENST00000431021 303 ntBASIC2.01□□□□□ -2.09
PTPN9P43378 AC099677.2-201ENST00000436385 175 ntBASIC2.01□□□□□ -2.09
PTPN9P43378 HSPE1P13-201ENST00000451143 297 ntBASIC2.01□□□□□ -2.09
PTPN9P43378 HSPE1P25-201ENST00000455484 251 ntBASIC2.01□□□□□ -2.09
PTPN9P43378 HMGB3P17-201ENST00000504195 649 ntBASIC2.01□□□□□ -2.09
PTPN9P43378 RNU6-966P-201ENST00000516479 104 ntBASIC2.01□□□□□ -2.09
PTPN9P43378 RNA5SP364-201ENST00000516938 78 ntBASIC2.01□□□□□ -2.09
PTPN9P43378 AL356133.2-201ENST00000521572 371 ntTSL 3 BASIC2.01□□□□□ -2.09
PTPN9P43378 AC092490.2-202ENST00000544922 462 ntTSL 3 BASIC2.01□□□□□ -2.09
PTPN9P43378 AC008269.2-201ENST00000561915 1105 ntBASIC2.01□□□□□ -2.09
PTPN9P43378 SNRPGP19-201ENST00000603826 189 ntBASIC2.01□□□□□ -2.09
PTPN9P43378 AL162730.1-201ENST00000605734 292 ntBASIC2.01□□□□□ -2.09
PTPN9P43378 C16orf97-206ENST00000622950 415 ntTSL 2 BASIC2.01□□□□□ -2.09
PTPN9P43378 U6.104-201ENST00000637979 90 ntBASIC2.01□□□□□ -2.09
PTPN9P43378 GS1-279B7.1-204ENST00000641809 378 ntBASIC2.01□□□□□ -2.09
PTPN9P43378 FSIP2-206ENST00000611759 3882 ntAPPRIS ALT2 TSL 5 BASIC2□□□□□ -2.09
PTPN9P43378 RNU6-862P-201ENST00000362804 105 ntBASIC2□□□□□ -2.09
PTPN9P43378 snoU2_19.2-201ENST00000363024 80 ntBASIC2□□□□□ -2.09
PTPN9P43378 RNU6-806P-201ENST00000365147 105 ntBASIC2□□□□□ -2.09
PTPN9P43378 RNU6-290P-201ENST00000365212 101 ntBASIC2□□□□□ -2.09
PTPN9P43378 Y_RNA.518-201ENST00000384552 113 ntBASIC2□□□□□ -2.09
PTPN9P43378 RNU6-417P-201ENST00000384712 107 ntBASIC2□□□□□ -2.09
PTPN9P43378 RNU4-30P-201ENST00000410245 143 ntBASIC2□□□□□ -2.09
PTPN9P43378 KRTAP25-1-201ENST00000416044 370 ntAPPRIS P1 BASIC2□□□□□ -2.09
PTPN9P43378 AC073323.1-201ENST00000419832 451 ntTSL 2 BASIC2□□□□□ -2.09
PTPN9P43378 AC024067.1-201ENST00000426199 223 ntBASIC2□□□□□ -2.09
PTPN9P43378 MTND3P2-201ENST00000438452 342 ntBASIC2□□□□□ -2.09
PTPN9P43378 RPS26P55-201ENST00000471178 356 ntBASIC2□□□□□ -2.09
PTPN9P43378 AC093893.1-201ENST00000505781 510 ntTSL 5 BASIC2□□□□□ -2.09
PTPN9P43378 AP005660.1-201ENST00000522972 293 ntBASIC2□□□□□ -2.09
PTPN9P43378 SNHG14-219ENST00000553134 470 ntTSL 2 BASIC2□□□□□ -2.09
PTPN9P43378 AC069114.2-201ENST00000604699 304 ntBASIC2□□□□□ -2.09
PTPN9P43378 AL359075.3-201ENST00000613288 217 ntBASIC2□□□□□ -2.09
PTPN9P43378 5S_rRNA.11-201ENST00000618635 84 ntBASIC2□□□□□ -2.09
PTPN9P43378 MIR8062-201ENST00000621515 85 ntBASIC2□□□□□ -2.09
PTPN9P43378 FSIP2-202ENST00000424728 20788 ntAPPRIS P2 TSL 5 BASIC2□□□□□ -2.09
PTPN9P43378 MGAT4C-207ENST00000552808 1937 ntAPPRIS P1 TSL 2 BASIC1.99□□□□□ -2.09
PTPN9P43378 Y_RNA.47-201ENST00000362697 108 ntBASIC1.99□□□□□ -2.09
PTPN9P43378 Y_RNA.64-201ENST00000362845 102 ntBASIC1.99□□□□□ -2.09
PTPN9P43378 Y_RNA.136-201ENST00000363444 102 ntBASIC1.99□□□□□ -2.09
PTPN9P43378 RNU6-1019P-201ENST00000364424 107 ntBASIC1.99□□□□□ -2.09
PTPN9P43378 AL512604.1-201ENST00000404812 257 ntBASIC1.99□□□□□ -2.09
PTPN9P43378 RPL21P38-201ENST00000418090 167 ntBASIC1.99□□□□□ -2.09
PTPN9P43378 POLR2KP2-201ENST00000438155 177 ntBASIC1.99□□□□□ -2.09
PTPN9P43378 AC069257.2-201ENST00000441819 155 ntBASIC1.99□□□□□ -2.09
PTPN9P43378 RNA5SP20-201ENST00000515976 84 ntBASIC1.99□□□□□ -2.09
PTPN9P43378 RNU7-99P-201ENST00000516271 62 ntBASIC1.99□□□□□ -2.09
PTPN9P43378 HMSD-204ENST00000526932 162 ntTSL 3 BASIC1.99□□□□□ -2.09
PTPN9P43378 MIR4438-201ENST00000585271 93 ntBASIC1.99□□□□□ -2.09
PTPN9P43378 hsa-mir-3158-1.1-201ENST00000637571 81 ntBASIC1.99□□□□□ -2.09
PTPN9P43378 TPTE2-204ENST00000400103 1652 ntTSL 5 BASIC1.99□□□□□ -2.09
PTPN9P43378 DYNC2H1-203ENST00000398093 12945 ntAPPRIS P3 TSL 5 BASIC1.98□□□□□ -2.09
PTPN9P43378 Y_RNA.26-201ENST00000362539 101 ntBASIC1.98□□□□□ -2.09
PTPN9P43378 RNU6-324P-201ENST00000363957 106 ntBASIC1.98□□□□□ -2.09
PTPN9P43378 SNORA16B-201ENST00000364674 135 ntBASIC1.98□□□□□ -2.09
PTPN9P43378 Y_RNA.383-201ENST00000383855 97 ntBASIC1.98□□□□□ -2.09
PTPN9P43378 RNU6-102P-201ENST00000384485 104 ntBASIC1.98□□□□□ -2.09
PTPN9P43378 Y_RNA.556-201ENST00000384677 113 ntBASIC1.98□□□□□ -2.09
PTPN9P43378 RNU6-1248P-201ENST00000391096 64 ntBASIC1.98□□□□□ -2.09
PTPN9P43378 MIR1302-3-201ENST00000408128 138 ntBASIC1.98□□□□□ -2.09
PTPN9P43378 Y_RNA.602-201ENST00000410535 92 ntBASIC1.98□□□□□ -2.09
PTPN9P43378 RNA5SP501-201ENST00000410990 112 ntBASIC1.98□□□□□ -2.09
PTPN9P43378 AL158823.1-201ENST00000418441 478 ntBASIC1.98□□□□□ -2.09
PTPN9P43378 AC108488.2-201ENST00000438485 421 ntAPPRIS P1 TSL 3 BASIC1.98□□□□□ -2.09
PTPN9P43378 RPS26P45-201ENST00000471748 340 ntBASIC1.98□□□□□ -2.09
PTPN9P43378 RPS27P22-201ENST00000478056 241 ntBASIC1.98□□□□□ -2.09
PTPN9P43378 AC097462.1-201ENST00000514125 324 ntBASIC1.98□□□□□ -2.09
PTPN9P43378 SUB1P4-201ENST00000566062 339 ntBASIC1.98□□□□□ -2.09
PTPN9P43378 MIR3935-201ENST00000583472 104 ntBASIC1.98□□□□□ -2.09
PTPN9P43378 Hammerhead_HH9.1-201ENST00000616606 77 ntBASIC1.98□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 94.2 ms