Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 TJP1-204ENST00000400011 6764 ntAPPRIS ALT2 TSL 1 (best) BASIC3.33□□□□□ -1.88
COL8A1P27658 SETDB2-202ENST00000317257 5619 ntAPPRIS ALT2 TSL 1 (best) BASIC3.33□□□□□ -1.88
COL8A1P27658 TLR10-206ENST00000508334 2616 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
COL8A1P27658 Y_RNA.440-201ENST00000384120 114 ntBASIC3.33□□□□□ -1.88
COL8A1P27658 RNU4-69P-201ENST00000410677 143 ntBASIC3.33□□□□□ -1.88
COL8A1P27658 RNU2-40P-201ENST00000410833 196 ntBASIC3.33□□□□□ -1.88
COL8A1P27658 RNU7-80P-201ENST00000459562 61 ntBASIC3.33□□□□□ -1.88
COL8A1P27658 RPS23P4-201ENST00000487908 423 ntBASIC3.33□□□□□ -1.88
COL8A1P27658 IGHVII-40-1-201ENST00000517316 58 ntBASIC3.33□□□□□ -1.88
COL8A1P27658 AC120045.1-201ENST00000563502 251 ntTSL 3 BASIC3.33□□□□□ -1.88
COL8A1P27658 AC139426.2-201ENST00000568289 251 ntTSL 3 BASIC3.33□□□□□ -1.88
COL8A1P27658 AC007598.2-201ENST00000569490 539 ntTSL 3 BASIC3.33□□□□□ -1.88
COL8A1P27658 MIR6715A-201ENST00000615929 79 ntBASIC3.33□□□□□ -1.88
COL8A1P27658 AC064859.1-201ENST00000624741 174 ntBASIC3.33□□□□□ -1.88
COL8A1P27658 ZFYVE16-201ENST00000338008 6773 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
COL8A1P27658 CEP170-202ENST00000366542 6828 ntAPPRIS P1 TSL 5 BASIC3.33□□□□□ -1.88
COL8A1P27658 NR5A2-201ENST00000236914 3115 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
COL8A1P27658 RAP2C-AS1-202ENST00000441399 3473 ntTSL 2 BASIC3.32□□□□□ -1.88
COL8A1P27658 BAZ2B-204ENST00000392783 8289 ntAPPRIS P1 TSL 5 BASIC3.32□□□□□ -1.88
COL8A1P27658 IDE-202ENST00000371581 4480 ntTSL 2 BASIC3.32□□□□□ -1.88
COL8A1P27658 SYT14-208ENST00000637265 13567 ntTSL 5 BASIC3.32□□□□□ -1.88
COL8A1P27658 THEMIS-205ENST00000626040 3179 ntAPPRIS ALT2 TSL 2 BASIC3.32□□□□□ -1.88
COL8A1P27658 AGBL2-201ENST00000357610 3295 ntAPPRIS ALT2 TSL 5 BASIC3.32□□□□□ -1.88
COL8A1P27658 AC005550.3-201ENST00000451240 3743 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
COL8A1P27658 Y_RNA.37-201ENST00000362606 108 ntBASIC3.32□□□□□ -1.88
COL8A1P27658 SNORD115-28-201ENST00000363931 81 ntBASIC3.32□□□□□ -1.88
COL8A1P27658 RNU6-1229P-201ENST00000364295 107 ntBASIC3.32□□□□□ -1.88
COL8A1P27658 SNORA14A-201ENST00000364773 135 ntBASIC3.32□□□□□ -1.88
COL8A1P27658 Y_RNA.467-201ENST00000384297 102 ntBASIC3.32□□□□□ -1.88
COL8A1P27658 MIR607-201ENST00000385241 96 ntBASIC3.32□□□□□ -1.88
COL8A1P27658 ATP5A1P2-201ENST00000412323 255 ntBASIC3.32□□□□□ -1.88
COL8A1P27658 HCG2040054-201ENST00000435331 434 ntTSL 3 BASIC3.32□□□□□ -1.88
COL8A1P27658 TRBV25OR9-2-201ENST00000438417 374 ntBASIC3.32□□□□□ -1.88
COL8A1P27658 AL353813.1-201ENST00000440700 253 ntBASIC3.32□□□□□ -1.88
COL8A1P27658 RPL36AP48-201ENST00000485521 314 ntBASIC3.32□□□□□ -1.88
COL8A1P27658 AC078918.1-201ENST00000498515 228 ntBASIC3.32□□□□□ -1.88
COL8A1P27658 DLEU2_5.2-201ENST00000610606 84 ntBASIC3.32□□□□□ -1.88
COL8A1P27658 MAPK10-373ENST00000641983 6772 ntBASIC3.32□□□□□ -1.88
COL8A1P27658 STEAP4-202ENST00000380079 9988 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
COL8A1P27658 ZNF415-224ENST00000601493 2132 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
COL8A1P27658 IL33-201ENST00000381434 2641 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
COL8A1P27658 ZNF962P-201ENST00000443465 3140 ntBASIC3.32□□□□□ -1.88
COL8A1P27658 OR6P1-202ENST00000641540 3255 ntAPPRIS P1 BASIC3.32□□□□□ -1.88
COL8A1P27658 OR1A1-202ENST00000641322 3743 ntAPPRIS P1 BASIC3.32□□□□□ -1.88
COL8A1P27658 AP001486.2-201ENST00000561652 5113 ntBASIC3.31□□□□□ -1.88
COL8A1P27658 RXFP1-201ENST00000307765 3842 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
COL8A1P27658 ZNF345-214ENST00000612719 2938 ntAPPRIS P1 TSL 4 BASIC3.31□□□□□ -1.88
COL8A1P27658 CLHC1-201ENST00000401408 2248 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
COL8A1P27658 RNA5SP39-201ENST00000411245 120 ntBASIC3.31□□□□□ -1.88
COL8A1P27658 COTL1P1-201ENST00000422309 375 ntBASIC3.31□□□□□ -1.88
COL8A1P27658 snoU13.28-201ENST00000459235 104 ntBASIC3.31□□□□□ -1.88
COL8A1P27658 AC122707.1-201ENST00000502882 219 ntTSL 2 BASIC3.31□□□□□ -1.88
COL8A1P27658 AC104984.5-201ENST00000586878 94 ntBASIC3.31□□□□□ -1.88
COL8A1P27658 AC145423.2-201ENST00000610631 239 ntBASIC3.31□□□□□ -1.88
COL8A1P27658 AC006441.5-201ENST00000612680 209 ntBASIC3.31□□□□□ -1.88
COL8A1P27658 AC093274.1-201ENST00000503488 5454 ntTSL 5 BASIC3.31□□□□□ -1.88
COL8A1P27658 TRMT10A-203ENST00000394877 3516 ntAPPRIS P1 TSL 2 BASIC3.3□□□□□ -1.88
COL8A1P27658 MS4A14-202ENST00000395001 3401 ntTSL 5 BASIC3.3□□□□□ -1.88
COL8A1P27658 MAPK10-372ENST00000641954 3413 ntBASIC3.3□□□□□ -1.88
COL8A1P27658 RNU6-633P-201ENST00000362612 103 ntBASIC3.3□□□□□ -1.88
COL8A1P27658 Y_RNA.191-201ENST00000363972 113 ntBASIC3.3□□□□□ -1.88
COL8A1P27658 RNA5SP126-201ENST00000365092 109 ntBASIC3.3□□□□□ -1.88
COL8A1P27658 Y_RNA.351-201ENST00000365436 96 ntBASIC3.3□□□□□ -1.88
COL8A1P27658 SNORD58A-201ENST00000383875 65 ntBASIC3.3□□□□□ -1.88
COL8A1P27658 Y_RNA.430-201ENST00000384081 110 ntBASIC3.3□□□□□ -1.88
COL8A1P27658 RNU6-679P-201ENST00000391003 106 ntBASIC3.3□□□□□ -1.88
COL8A1P27658 RNU11-5P-201ENST00000391216 129 ntBASIC3.3□□□□□ -1.88
COL8A1P27658 RNA5SP129-201ENST00000410276 118 ntBASIC3.3□□□□□ -1.88
COL8A1P27658 AC108067.1-201ENST00000514304 215 ntTSL 5 BASIC3.3□□□□□ -1.88
COL8A1P27658 MIR4439-201ENST00000583746 80 ntBASIC3.3□□□□□ -1.88
COL8A1P27658 MIR4712-201ENST00000583750 82 ntBASIC3.3□□□□□ -1.88
COL8A1P27658 MGA-211ENST00000570161 11859 ntAPPRIS P4 TSL 5 BASIC3.3□□□□□ -1.88
COL8A1P27658 SLITRK4-203ENST00000596188 8545 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
COL8A1P27658 MBNL3-204ENST00000370853 2661 ntAPPRIS P4 TSL 1 (best) BASIC3.3□□□□□ -1.88
COL8A1P27658 POSTN-203ENST00000379747 3373 ntAPPRIS P3 TSL 1 (best) BASIC3.3□□□□□ -1.88
COL8A1P27658 MTUS1-228ENST00000544260 3650 ntTSL 2 BASIC3.3□□□□□ -1.88
COL8A1P27658 AL445259.1-201ENST00000587106 2984 ntTSL 5 BASIC3.3□□□□□ -1.88
COL8A1P27658 MLH1-212ENST00000455445 2296 ntTSL 2 BASIC3.3□□□□□ -1.88
COL8A1P27658 ZBTB37-201ENST00000367701 19128 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
COL8A1P27658 GAB1-203ENST00000505913 2477 ntTSL 2 BASIC3.29□□□□□ -1.88
COL8A1P27658 FIGNL1-201ENST00000356889 3471 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
COL8A1P27658 KTN1-204ENST00000395311 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC3.29□□□□□ -1.88
COL8A1P27658 CCSER1-201ENST00000432775 3927 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
COL8A1P27658 GPRC6A-201ENST00000310357 2860 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
COL8A1P27658 RNU1-33P-201ENST00000364249 162 ntBASIC3.29□□□□□ -1.88
COL8A1P27658 RNU6-1201P-201ENST00000384227 107 ntBASIC3.29□□□□□ -1.88
COL8A1P27658 MIR802-201ENST00000390235 94 ntBASIC3.29□□□□□ -1.88
COL8A1P27658 AC233266.1-201ENST00000454518 96 ntBASIC3.29□□□□□ -1.88
COL8A1P27658 RNU7-25P-201ENST00000516544 62 ntBASIC3.29□□□□□ -1.88
COL8A1P27658 RNA5SP309-201ENST00000516670 106 ntBASIC3.29□□□□□ -1.88
COL8A1P27658 SNORD36C-201ENST00000516733 66 ntBASIC3.29□□□□□ -1.88
COL8A1P27658 MIR4644-201ENST00000579929 84 ntBASIC3.29□□□□□ -1.88
COL8A1P27658 AC110741.2-201ENST00000605278 268 ntBASIC3.29□□□□□ -1.88
COL8A1P27658 AC242852.1-201ENST00000612151 96 ntBASIC3.29□□□□□ -1.88
COL8A1P27658 uc_338.14-201ENST00000613162 166 ntBASIC3.29□□□□□ -1.88
COL8A1P27658 AC244015.1-201ENST00000622301 99 ntBASIC3.29□□□□□ -1.88
COL8A1P27658 AC091932.4-201ENST00000623386 200 ntBASIC3.29□□□□□ -1.88
COL8A1P27658 MYCBP2-211ENST00000544440 14664 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
COL8A1P27658 TNNI3K-201ENST00000326637 3001 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
COL8A1P27658 ZNF43-207ENST00000595461 3399 ntAPPRIS ALT2 TSL 1 (best) BASIC3.29□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 105.9 ms