Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 AC091021.1-201ENST00000468051 388 ntBASIC0.67□□□□□ -2.3
USF1P22415 RPS26P48-201ENST00000491713 339 ntBASIC0.67□□□□□ -2.3
USF1P22415 RNU6-197P-201ENST00000516680 100 ntBASIC0.67□□□□□ -2.3
USF1P22415 AC026407.1-201ENST00000518369 204 ntBASIC0.67□□□□□ -2.3
USF1P22415 AC090142.3-201ENST00000519012 385 ntBASIC0.67□□□□□ -2.3
USF1P22415 AP002001.1-203ENST00000534002 267 ntBASIC0.67□□□□□ -2.3
USF1P22415 MIR4714-201ENST00000580728 77 ntBASIC0.67□□□□□ -2.3
USF1P22415 MIR4653-201ENST00000585107 83 ntBASIC0.67□□□□□ -2.3
USF1P22415 MIR1321-201ENST00000637766 79 ntBASIC0.67□□□□□ -2.3
USF1P22415 MIR6866-201ENST00000638146 69 ntBASIC0.67□□□□□ -2.3
USF1P22415 AC008163.1-202ENST00000636004 2889 ntBASIC0.67□□□□□ -2.3
USF1P22415 DEUP1-202ENST00000525646 1920 ntTSL 1 (best) BASIC0.66□□□□□ -2.3
USF1P22415 RNU6-595P-201ENST00000363944 107 ntBASIC0.66□□□□□ -2.3
USF1P22415 RNU6-969P-201ENST00000383900 105 ntBASIC0.66□□□□□ -2.3
USF1P22415 RNY1P4-201ENST00000384595 115 ntBASIC0.66□□□□□ -2.3
USF1P22415 MIR608-201ENST00000384820 100 ntBASIC0.66□□□□□ -2.3
USF1P22415 MIR942-201ENST00000401111 86 ntBASIC0.66□□□□□ -2.3
USF1P22415 RNU2-16P-201ENST00000410712 136 ntBASIC0.66□□□□□ -2.3
USF1P22415 MTND3P23-201ENST00000431980 347 ntBASIC0.66□□□□□ -2.3
USF1P22415 AC098826.2-201ENST00000452011 651 ntBASIC0.66□□□□□ -2.3
USF1P22415 LINC01399-202ENST00000458450 244 ntBASIC0.66□□□□□ -2.3
USF1P22415 PSMC1P5-201ENST00000512850 177 ntBASIC0.66□□□□□ -2.3
USF1P22415 AC046134.1-201ENST00000514454 666 ntBASIC0.66□□□□□ -2.3
USF1P22415 RNU6-351P-201ENST00000516097 100 ntBASIC0.66□□□□□ -2.3
USF1P22415 AC092071.1-201ENST00000597260 549 ntTSL 5 BASIC0.66□□□□□ -2.3
USF1P22415 MIR6835-201ENST00000621552 64 ntBASIC0.66□□□□□ -2.3
USF1P22415 hsa-mir-548d-1.1-201ENST00000636914 97 ntBASIC0.66□□□□□ -2.3
USF1P22415 MT-ND4-201ENST00000361381 1378 ntAPPRIS P1 BASIC0.66□□□□□ -2.3
USF1P22415 AC005592.1-201ENST00000566527 1640 ntBASIC0.65□□□□□ -2.31
USF1P22415 SNORA1B-201ENST00000362535 133 ntBASIC0.65□□□□□ -2.31
USF1P22415 Y_RNA.38-201ENST00000362617 102 ntBASIC0.65□□□□□ -2.31
USF1P22415 Y_RNA.205-201ENST00000364128 113 ntBASIC0.65□□□□□ -2.31
USF1P22415 RNU6-1264P-201ENST00000383891 107 ntBASIC0.65□□□□□ -2.31
USF1P22415 RNU6-306P-201ENST00000384617 107 ntBASIC0.65□□□□□ -2.31
USF1P22415 USP9YP16-201ENST00000430287 407 ntBASIC0.65□□□□□ -2.31
USF1P22415 AC012445.1-201ENST00000442831 607 ntTSL 3 BASIC0.65□□□□□ -2.31
USF1P22415 AL121580.1-201ENST00000449941 219 ntTSL 3 BASIC0.65□□□□□ -2.31
USF1P22415 USP9YP23-201ENST00000455085 407 ntBASIC0.65□□□□□ -2.31
USF1P22415 RNU7-21P-201ENST00000459430 62 ntBASIC0.65□□□□□ -2.31
USF1P22415 AC018710.1-201ENST00000506509 158 ntBASIC0.65□□□□□ -2.31
USF1P22415 RNA5SP20-201ENST00000515976 84 ntBASIC0.65□□□□□ -2.31
USF1P22415 Y_RNA.706-201ENST00000516933 99 ntBASIC0.65□□□□□ -2.31
USF1P22415 AC093023.1-201ENST00000547375 507 ntBASIC0.65□□□□□ -2.31
USF1P22415 AC084882.1-201ENST00000561254 555 ntTSL 4 BASIC0.65□□□□□ -2.31
USF1P22415 PRELID3BP2-201ENST00000605362 201 ntBASIC0.65□□□□□ -2.31
USF1P22415 AC100812.1-201ENST00000607622 580 ntBASIC0.65□□□□□ -2.31
USF1P22415 NCRUPAR_2.1-201ENST00000616308 99 ntBASIC0.65□□□□□ -2.31
USF1P22415 AC109471.3-201ENST00000625219 233 ntTSL 5 BASIC0.65□□□□□ -2.31
USF1P22415 AL442644.1-201ENST00000454390 3105 ntBASIC0.65□□□□□ -2.31
USF1P22415 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC0.65□□□□□ -2.31
USF1P22415 Y_RNA.51-201ENST00000362725 102 ntBASIC0.64□□□□□ -2.31
USF1P22415 RNU6-407P-201ENST00000365280 104 ntBASIC0.64□□□□□ -2.31
USF1P22415 SNORD116-1-201ENST00000384335 95 ntBASIC0.64□□□□□ -2.31
USF1P22415 RNU6-376P-201ENST00000384731 106 ntBASIC0.64□□□□□ -2.31
USF1P22415 RPS3AP1-201ENST00000413190 320 ntBASIC0.64□□□□□ -2.31
USF1P22415 AC018865.2-201ENST00000423631 129 ntBASIC0.64□□□□□ -2.31
USF1P22415 AC104332.1-201ENST00000440471 797 ntBASIC0.64□□□□□ -2.31
USF1P22415 AL138921.2-201ENST00000443919 578 ntTSL 5 BASIC0.64□□□□□ -2.31
USF1P22415 AC073127.1-201ENST00000447336 333 ntTSL 3 BASIC0.64□□□□□ -2.31
USF1P22415 RNU7-90P-201ENST00000459216 62 ntBASIC0.64□□□□□ -2.31
USF1P22415 RNU6-1278P-201ENST00000516130 107 ntBASIC0.64□□□□□ -2.31
USF1P22415 AL356133.2-201ENST00000521572 371 ntTSL 3 BASIC0.64□□□□□ -2.31
USF1P22415 AC136628.3-201ENST00000521868 290 ntBASIC0.64□□□□□ -2.31
USF1P22415 AC090617.3-201ENST00000573670 475 ntBASIC0.64□□□□□ -2.31
USF1P22415 AL117336.2-201ENST00000602435 335 ntBASIC0.64□□□□□ -2.31
USF1P22415 AL590095.2-201ENST00000604136 117 ntBASIC0.64□□□□□ -2.31
USF1P22415 AC004832.4-201ENST00000608952 331 ntBASIC0.64□□□□□ -2.31
USF1P22415 MCMDC2-207ENST00000492775 1831 ntTSL 1 (best) BASIC0.64□□□□□ -2.31
USF1P22415 CASC19-280ENST00000642102 1351 ntBASIC0.63□□□□□ -2.31
USF1P22415 HSBP1P2-201ENST00000299671 229 ntBASIC0.63□□□□□ -2.31
USF1P22415 MIRLET7C-201ENST00000362160 84 ntBASIC0.63□□□□□ -2.31
USF1P22415 SNORA27.1-201ENST00000362604 124 ntBASIC0.63□□□□□ -2.31
USF1P22415 MIR508-201ENST00000384857 115 ntBASIC0.63□□□□□ -2.31
USF1P22415 RNU6-373P-201ENST00000411247 98 ntBASIC0.63□□□□□ -2.31
USF1P22415 AC245047.8-201ENST00000456455 284 ntBASIC0.63□□□□□ -2.31
USF1P22415 AL160162.1-201ENST00000456715 442 ntTSL 3 BASIC0.63□□□□□ -2.31
USF1P22415 AC122707.1-201ENST00000502882 219 ntTSL 2 BASIC0.63□□□□□ -2.31
USF1P22415 AC079467.1-201ENST00000508512 503 ntTSL 3 BASIC0.63□□□□□ -2.31
USF1P22415 AL358944.1-201ENST00000528537 144 ntBASIC0.63□□□□□ -2.31
USF1P22415 AC099518.4-202ENST00000576433 455 ntTSL 2 BASIC0.63□□□□□ -2.31
USF1P22415 AC005730.3-201ENST00000583067 366 ntBASIC0.63□□□□□ -2.31
USF1P22415 MIR6513-201ENST00000621188 64 ntBASIC0.63□□□□□ -2.31
USF1P22415 AC022079.1-201ENST00000621546 602 ntBASIC0.63□□□□□ -2.31
USF1P22415 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC0.63□□□□□ -2.31
USF1P22415 AC073544.1-201ENST00000600110 1595 ntBASIC0.62□□□□□ -2.31
USF1P22415 RNU6-222P-201ENST00000362438 107 ntBASIC0.62□□□□□ -2.31
USF1P22415 RNA5SP325-201ENST00000363756 130 ntBASIC0.62□□□□□ -2.31
USF1P22415 SNORD116-13-201ENST00000384408 92 ntBASIC0.62□□□□□ -2.31
USF1P22415 MIR520G-201ENST00000385064 90 ntBASIC0.62□□□□□ -2.31
USF1P22415 PSPC1-AS2-201ENST00000423023 376 ntTSL 3 BASIC0.62□□□□□ -2.31
USF1P22415 AL137792.2-201ENST00000443484 235 ntBASIC0.62□□□□□ -2.31
USF1P22415 UQCRBP2-201ENST00000447827 297 ntBASIC0.62□□□□□ -2.31
USF1P22415 AL049830.1-201ENST00000468034 425 ntBASIC0.62□□□□□ -2.31
USF1P22415 AC004930.1-201ENST00000470677 254 ntTSL 2 BASIC0.62□□□□□ -2.31
USF1P22415 SNORA70.12-201ENST00000516084 153 ntBASIC0.62□□□□□ -2.31
USF1P22415 RNA5SP255-201ENST00000516370 107 ntBASIC0.62□□□□□ -2.31
USF1P22415 RNU6-1291P-201ENST00000516591 104 ntBASIC0.62□□□□□ -2.31
USF1P22415 DEFB108E-201ENST00000524692 240 ntBASIC0.62□□□□□ -2.31
USF1P22415 MIR3942-201ENST00000585264 109 ntBASIC0.62□□□□□ -2.31
USF1P22415 TRAJ36-201ENST00000614481 58 ntAPPRIS P1 BASIC0.62□□□□□ -2.31
Retrieved 100 of 98,524 protein–RNA pairs in 124.5 ms