Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 AC022493.2-201ENST00000506122 481 ntBASIC0.95□□□□□ -2.26
CLDN3O15551 SCARNA16.2-201ENST00000516520 172 ntBASIC0.95□□□□□ -2.26
CLDN3O15551 AC242852.1-201ENST00000612151 96 ntBASIC0.95□□□□□ -2.26
CLDN3O15551 AC244015.1-201ENST00000622301 99 ntBASIC0.95□□□□□ -2.26
CLDN3O15551 EFCAB5-213ENST00000638539 168 ntTSL 5 BASIC0.95□□□□□ -2.26
CLDN3O15551 MCMDC2-207ENST00000492775 1831 ntTSL 1 (best) BASIC0.94□□□□□ -2.26
CLDN3O15551 SNORA27.1-201ENST00000362604 124 ntBASIC0.94□□□□□ -2.26
CLDN3O15551 RNU6-879P-201ENST00000364328 108 ntBASIC0.94□□□□□ -2.26
CLDN3O15551 Y_RNA.450-201ENST00000384198 113 ntBASIC0.94□□□□□ -2.26
CLDN3O15551 SNORD12-201ENST00000391002 90 ntBASIC0.94□□□□□ -2.26
CLDN3O15551 MIR190B-201ENST00000401119 79 ntBASIC0.94□□□□□ -2.26
CLDN3O15551 AC016907.1-201ENST00000419483 435 ntBASIC0.94□□□□□ -2.26
CLDN3O15551 EIF1P2-201ENST00000428233 350 ntBASIC0.94□□□□□ -2.26
CLDN3O15551 AC002429.1-201ENST00000437672 148 ntBASIC0.94□□□□□ -2.26
CLDN3O15551 AL138808.1-201ENST00000441428 371 ntTSL 2 BASIC0.94□□□□□ -2.26
CLDN3O15551 SNORD5.1-201ENST00000458800 75 ntBASIC0.94□□□□□ -2.26
CLDN3O15551 SNORD124-201ENST00000459577 104 ntBASIC0.94□□□□□ -2.26
CLDN3O15551 SNORD79.1-201ENST00000516069 84 ntBASIC0.94□□□□□ -2.26
CLDN3O15551 MIR4698-201ENST00000577795 80 ntBASIC0.94□□□□□ -2.26
CLDN3O15551 AC090227.2-201ENST00000591105 340 ntTSL 5 BASIC0.94□□□□□ -2.26
CLDN3O15551 AC068790.6-201ENST00000602558 258 ntBASIC0.94□□□□□ -2.26
CLDN3O15551 AC211469.2-201ENST00000605461 205 ntBASIC0.94□□□□□ -2.26
CLDN3O15551 AC080013.6-201ENST00000606185 215 ntBASIC0.94□□□□□ -2.26
CLDN3O15551 ZRANB2-AS2-222ENST00000625045 1014 ntTSL 5 BASIC0.94□□□□□ -2.26
CLDN3O15551 NPAT-201ENST00000278612 6117 ntAPPRIS P2 TSL 1 (best) BASIC0.93□□□□□ -2.26
CLDN3O15551 LRRD1-203ENST00000430130 2661 ntAPPRIS P1 TSL 5 BASIC0.93□□□□□ -2.26
CLDN3O15551 SENP7-201ENST00000314261 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC0.93□□□□□ -2.26
CLDN3O15551 Y_RNA.124-201ENST00000363339 93 ntBASIC0.93□□□□□ -2.26
CLDN3O15551 Y_RNA.301-201ENST00000364990 103 ntBASIC0.93□□□□□ -2.26
CLDN3O15551 LINC00583-201ENST00000381010 387 ntTSL 2 BASIC0.93□□□□□ -2.26
CLDN3O15551 Y_RNA.498-201ENST00000384460 102 ntBASIC0.93□□□□□ -2.26
CLDN3O15551 MIR329-1-201ENST00000385028 80 ntBASIC0.93□□□□□ -2.26
CLDN3O15551 RNA5SP482-201ENST00000391269 118 ntBASIC0.93□□□□□ -2.26
CLDN3O15551 ELOCP21-201ENST00000412558 336 ntBASIC0.93□□□□□ -2.26
CLDN3O15551 PSPC1-AS2-201ENST00000423023 376 ntTSL 3 BASIC0.93□□□□□ -2.26
CLDN3O15551 RPL39P28-201ENST00000465655 155 ntBASIC0.93□□□□□ -2.26
CLDN3O15551 SEMA6A-AS1-204ENST00000510682 521 ntTSL 5 BASIC0.93□□□□□ -2.26
CLDN3O15551 AC025030.2-201ENST00000552558 567 ntTSL 2 BASIC0.93□□□□□ -2.26
CLDN3O15551 AC090510.1-201ENST00000567456 425 ntTSL 3 BASIC0.93□□□□□ -2.26
CLDN3O15551 AC091178.2-201ENST00000584401 117 ntBASIC0.93□□□□□ -2.26
CLDN3O15551 AC104260.1-201ENST00000616660 539 ntBASIC0.93□□□□□ -2.26
CLDN3O15551 Y_RNA.2-201ENST00000362330 96 ntBASIC0.92□□□□□ -2.26
CLDN3O15551 RNA5SP361-201ENST00000362686 118 ntBASIC0.92□□□□□ -2.26
CLDN3O15551 SNORD114-24-201ENST00000365029 72 ntBASIC0.92□□□□□ -2.26
CLDN3O15551 Y_RNA.363-201ENST00000365529 113 ntBASIC0.92□□□□□ -2.26
CLDN3O15551 Y_RNA.364-201ENST00000365532 101 ntBASIC0.92□□□□□ -2.26
CLDN3O15551 Y_RNA.473-201ENST00000384333 102 ntBASIC0.92□□□□□ -2.26
CLDN3O15551 POLR2J4-204ENST00000418424 324 ntBASIC0.92□□□□□ -2.26
CLDN3O15551 UBE2V1P7-201ENST00000446395 340 ntBASIC0.92□□□□□ -2.26
CLDN3O15551 ACA64.5-201ENST00000516207 127 ntBASIC0.92□□□□□ -2.26
CLDN3O15551 Y_RNA.682-201ENST00000516457 100 ntBASIC0.92□□□□□ -2.26
CLDN3O15551 AP002001.1-203ENST00000534002 267 ntBASIC0.92□□□□□ -2.26
CLDN3O15551 AL117336.2-201ENST00000602435 335 ntBASIC0.92□□□□□ -2.26
CLDN3O15551 FAM71BP1-201ENST00000604431 523 ntBASIC0.92□□□□□ -2.26
CLDN3O15551 AL357075.2-201ENST00000614906 189 ntBASIC0.92□□□□□ -2.26
CLDN3O15551 AC027514.1-201ENST00000588561 1603 ntBASIC0.92□□□□□ -2.26
CLDN3O15551 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC0.91□□□□□ -2.26
CLDN3O15551 Y_RNA.224-201ENST00000364308 111 ntBASIC0.91□□□□□ -2.26
CLDN3O15551 RNU6-1145P-201ENST00000384246 107 ntBASIC0.91□□□□□ -2.26
CLDN3O15551 SNORA80D-201ENST00000384488 135 ntBASIC0.91□□□□□ -2.26
CLDN3O15551 MTATP6P26-201ENST00000445926 662 ntBASIC0.91□□□□□ -2.26
CLDN3O15551 PCNPP5-201ENST00000452246 481 ntBASIC0.91□□□□□ -2.26
CLDN3O15551 LINC01399-202ENST00000458450 244 ntBASIC0.91□□□□□ -2.26
CLDN3O15551 AL049830.1-201ENST00000468034 425 ntBASIC0.91□□□□□ -2.26
CLDN3O15551 PDCD5P2-201ENST00000507570 312 ntBASIC0.91□□□□□ -2.26
CLDN3O15551 RNU4-49P-201ENST00000516080 140 ntBASIC0.91□□□□□ -2.26
CLDN3O15551 AC022868.1-201ENST00000517767 391 ntBASIC0.91□□□□□ -2.26
CLDN3O15551 AC018448.1-201ENST00000552843 316 ntBASIC0.91□□□□□ -2.26
CLDN3O15551 EIF1P4-201ENST00000572664 335 ntBASIC0.91□□□□□ -2.26
CLDN3O15551 AC018462.2-201ENST00000605375 395 ntBASIC0.91□□□□□ -2.26
CLDN3O15551 AL020996.3-201ENST00000606617 222 ntBASIC0.91□□□□□ -2.26
CLDN3O15551 AC127459.3-201ENST00000624328 466 ntBASIC0.91□□□□□ -2.26
CLDN3O15551 AC008163.1-202ENST00000636004 2889 ntBASIC0.9□□□□□ -2.26
CLDN3O15551 CEP162-202ENST00000403245 5156 ntAPPRIS P1 TSL 5 BASIC0.9□□□□□ -2.26
CLDN3O15551 ANKRD30BP1-201ENST00000451052 2186 ntBASIC0.9□□□□□ -2.26
CLDN3O15551 Y_RNA.453-201ENST00000384223 109 ntBASIC0.9□□□□□ -2.27
CLDN3O15551 RNA5SP475-201ENST00000410568 110 ntBASIC0.9□□□□□ -2.27
CLDN3O15551 AL353997.1-201ENST00000432936 108 ntBASIC0.9□□□□□ -2.27
CLDN3O15551 AC108488.2-201ENST00000438485 421 ntAPPRIS P1 TSL 3 BASIC0.9□□□□□ -2.27
CLDN3O15551 AL137792.2-201ENST00000443484 235 ntBASIC0.9□□□□□ -2.27
CLDN3O15551 AL353614.1-201ENST00000445631 206 ntTSL 5 BASIC0.9□□□□□ -2.27
CLDN3O15551 RPS29P1-201ENST00000465274 159 ntBASIC0.9□□□□□ -2.27
CLDN3O15551 RPS29P25-201ENST00000481709 171 ntBASIC0.9□□□□□ -2.27
CLDN3O15551 AC074133.1-201ENST00000515696 183 ntBASIC0.9□□□□□ -2.27
CLDN3O15551 RNU6-720P-201ENST00000516363 108 ntBASIC0.9□□□□□ -2.27
CLDN3O15551 MIR5701-3-201ENST00000578890 82 ntBASIC0.9□□□□□ -2.27
CLDN3O15551 MIR5701-1-201ENST00000585138 82 ntBASIC0.9□□□□□ -2.27
CLDN3O15551 AC005014.2-201ENST00000607795 599 ntBASIC0.9□□□□□ -2.27
CLDN3O15551 MIR5701-2-201ENST00000615634 82 ntBASIC0.9□□□□□ -2.27
CLDN3O15551 ZNF415-224ENST00000601493 2132 ntTSL 1 (best) BASIC0.89□□□□□ -2.27
CLDN3O15551 RNU6-623P-201ENST00000363143 105 ntBASIC0.89□□□□□ -2.27
CLDN3O15551 SNORD114-2-201ENST00000363953 78 ntBASIC0.89□□□□□ -2.27
CLDN3O15551 DEFB134-201ENST00000382205 314 ntAPPRIS P1 TSL 1 (best) BASIC0.89□□□□□ -2.27
CLDN3O15551 RNU6-136P-201ENST00000384663 107 ntBASIC0.89□□□□□ -2.27
CLDN3O15551 Y_RNA.557-201ENST00000384680 107 ntBASIC0.89□□□□□ -2.27
CLDN3O15551 MIR520G-201ENST00000385064 90 ntBASIC0.89□□□□□ -2.27
CLDN3O15551 MIR942-201ENST00000401111 86 ntBASIC0.89□□□□□ -2.27
CLDN3O15551 MTCYBP10-201ENST00000424905 650 ntBASIC0.89□□□□□ -2.27
CLDN3O15551 RNU6-625P-201ENST00000459412 107 ntBASIC0.89□□□□□ -2.27
CLDN3O15551 AC079467.1-201ENST00000508512 503 ntTSL 3 BASIC0.89□□□□□ -2.27
Retrieved 100 of 98,524 protein–RNA pairs in 132.8 ms