Protein–RNA interactions for Protein: Q9UPQ0

LIMCH1, LIM and calponin homology domains-containing protein 1, humanhuman

Predictions only

Length 1,083 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1Q9UPQ0 KTN1-214ENST00000554507 2057 ntTSL 1 (best) BASIC2.59□□□□□ -2
LIMCH1Q9UPQ0 CEP57-213ENST00000541150 2911 ntAPPRIS ALT2 TSL 5 BASIC2.58□□□□□ -2
LIMCH1Q9UPQ0 IDE-201ENST00000265986 5877 ntAPPRIS P1 TSL 1 (best) BASIC2.58□□□□□ -2
LIMCH1Q9UPQ0 WWP1-201ENST00000265428 3362 ntAPPRIS P1 TSL 1 (best) BASIC2.58□□□□□ -2
LIMCH1Q9UPQ0 RNA5SP289-201ENST00000362332 137 ntBASIC2.58□□□□□ -2
LIMCH1Q9UPQ0 RNU1-91P-201ENST00000364746 163 ntBASIC2.58□□□□□ -2
LIMCH1Q9UPQ0 SNORA20.1-201ENST00000364790 130 ntBASIC2.58□□□□□ -2
LIMCH1Q9UPQ0 C6orf10-201ENST00000375007 2125 ntAPPRIS ALT2 TSL 5 BASIC2.58□□□□□ -2
LIMCH1Q9UPQ0 SNORA40.19-201ENST00000390846 128 ntBASIC2.58□□□□□ -2
LIMCH1Q9UPQ0 AFDN-AS1-202ENST00000417244 182 ntTSL 2 BASIC2.58□□□□□ -2
LIMCH1Q9UPQ0 AC010154.1-201ENST00000425857 269 ntBASIC2.58□□□□□ -2
LIMCH1Q9UPQ0 AL513185.1-201ENST00000431638 162 ntTSL 5 BASIC2.58□□□□□ -2
LIMCH1Q9UPQ0 AC003988.1-201ENST00000447198 578 ntTSL 5 BASIC2.58□□□□□ -2
LIMCH1Q9UPQ0 SNORD65B-201ENST00000459126 73 ntBASIC2.58□□□□□ -2
LIMCH1Q9UPQ0 VCAN-AS1-202ENST00000513899 453 ntTSL 3 BASIC2.58□□□□□ -2
LIMCH1Q9UPQ0 RNA5SP200-201ENST00000516360 103 ntBASIC2.58□□□□□ -2
LIMCH1Q9UPQ0 RNA5SP137-201ENST00000516833 135 ntBASIC2.58□□□□□ -2
LIMCH1Q9UPQ0 AC005357.1-201ENST00000588399 301 ntBASIC2.58□□□□□ -2
LIMCH1Q9UPQ0 U2.14-201ENST00000615943 113 ntBASIC2.58□□□□□ -2
LIMCH1Q9UPQ0 KCNQ1OT1_5.1-201ENST00000621902 226 ntBASIC2.58□□□□□ -2
LIMCH1Q9UPQ0 LCORL-202ENST00000382224 4984 ntAPPRIS ALT2 TSL 5 BASIC2.58□□□□□ -2
LIMCH1Q9UPQ0 SKIL-202ENST00000413427 2702 ntTSL 1 (best) BASIC2.57□□□□□ -2
LIMCH1Q9UPQ0 MIR340-201ENST00000362125 95 ntBASIC2.57□□□□□ -2
LIMCH1Q9UPQ0 Y_RNA.44-201ENST00000362676 108 ntBASIC2.57□□□□□ -2
LIMCH1Q9UPQ0 Y_RNA.418-201ENST00000384029 102 ntBASIC2.57□□□□□ -2
LIMCH1Q9UPQ0 SNORA20B-201ENST00000384220 132 ntBASIC2.57□□□□□ -2
LIMCH1Q9UPQ0 SNORA48.3-201ENST00000391081 134 ntBASIC2.57□□□□□ -2
LIMCH1Q9UPQ0 MIR873-201ENST00000401120 77 ntBASIC2.57□□□□□ -2
LIMCH1Q9UPQ0 MIR1262-201ENST00000408276 93 ntBASIC2.57□□□□□ -2
LIMCH1Q9UPQ0 MTCO1P5-201ENST00000433573 344 ntBASIC2.57□□□□□ -2
LIMCH1Q9UPQ0 AC091133.1-201ENST00000435491 483 ntTSL 3 BASIC2.57□□□□□ -2
LIMCH1Q9UPQ0 MRPS10P1-201ENST00000448483 130 ntBASIC2.57□□□□□ -2
LIMCH1Q9UPQ0 AC011753.1-201ENST00000451001 220 ntBASIC2.57□□□□□ -2
LIMCH1Q9UPQ0 SNORA27.4-201ENST00000516650 95 ntBASIC2.57□□□□□ -2
LIMCH1Q9UPQ0 RNA5SP82-201ENST00000516707 92 ntBASIC2.57□□□□□ -2
LIMCH1Q9UPQ0 SUMO2P18-201ENST00000518873 252 ntBASIC2.57□□□□□ -2
LIMCH1Q9UPQ0 AP001363.1-201ENST00000544108 264 ntTSL 3 BASIC2.57□□□□□ -2
LIMCH1Q9UPQ0 AC007598.1-202ENST00000561528 435 ntTSL 3 BASIC2.57□□□□□ -2
LIMCH1Q9UPQ0 AC012435.2-201ENST00000562869 361 ntTSL 3 BASIC2.57□□□□□ -2
LIMCH1Q9UPQ0 MIR3128-201ENST00000581957 66 ntBASIC2.57□□□□□ -2
LIMCH1Q9UPQ0 MIR4658-201ENST00000584344 65 ntBASIC2.57□□□□□ -2
LIMCH1Q9UPQ0 DEFB117-201ENST00000602356 141 ntBASIC2.57□□□□□ -2
LIMCH1Q9UPQ0 BX284668.6-201ENST00000606899 438 ntBASIC2.57□□□□□ -2
LIMCH1Q9UPQ0 CCDC30-201ENST00000340612 2664 ntAPPRIS P2 TSL 5 BASIC2.57□□□□□ -2
LIMCH1Q9UPQ0 TAB2-205ENST00000538427 4240 ntAPPRIS P1 TSL 5 BASIC2.57□□□□□ -2
LIMCH1Q9UPQ0 UBE2WP1-201ENST00000362030 340 ntBASIC2.56□□□□□ -2
LIMCH1Q9UPQ0 Y_RNA.20-201ENST00000362479 113 ntBASIC2.56□□□□□ -2
LIMCH1Q9UPQ0 RNU1-52P-201ENST00000384190 164 ntBASIC2.56□□□□□ -2
LIMCH1Q9UPQ0 MIR1253-201ENST00000408273 105 ntBASIC2.56□□□□□ -2
LIMCH1Q9UPQ0 RNU2-61P-201ENST00000411069 191 ntBASIC2.56□□□□□ -2
LIMCH1Q9UPQ0 AL353689.1-201ENST00000438895 199 ntBASIC2.56□□□□□ -2
LIMCH1Q9UPQ0 LNX1-AS1-202ENST00000510785 550 ntTSL 2 BASIC2.56□□□□□ -2
LIMCH1Q9UPQ0 RNU6-388P-201ENST00000517012 105 ntBASIC2.56□□□□□ -2
LIMCH1Q9UPQ0 RNU6-389P-201ENST00000517048 105 ntBASIC2.56□□□□□ -2
LIMCH1Q9UPQ0 AC092138.2-201ENST00000563811 428 ntTSL 5 BASIC2.56□□□□□ -2
LIMCH1Q9UPQ0 DSCR8-208ENST00000614538 403 ntAPPRIS P5 TSL 5 BASIC2.56□□□□□ -2
LIMCH1Q9UPQ0 SNORA27.1-201ENST00000362604 124 ntBASIC2.55□□□□□ -2
LIMCH1Q9UPQ0 Y_RNA.552-201ENST00000384665 112 ntBASIC2.55□□□□□ -2
LIMCH1Q9UPQ0 AL355796.1-201ENST00000406706 323 ntBASIC2.55□□□□□ -2
LIMCH1Q9UPQ0 AC091959.1-201ENST00000495857 238 ntBASIC2.55□□□□□ -2
LIMCH1Q9UPQ0 RNU6-191P-201ENST00000516295 94 ntBASIC2.55□□□□□ -2
LIMCH1Q9UPQ0 KNL1-204ENST00000527044 5404 ntTSL 5 BASIC2.55□□□□□ -2
LIMCH1Q9UPQ0 U2.15-201ENST00000611544 191 ntBASIC2.55□□□□□ -2
LIMCH1Q9UPQ0 U2.16-201ENST00000613119 191 ntBASIC2.55□□□□□ -2
LIMCH1Q9UPQ0 U2.12-201ENST00000613778 191 ntBASIC2.55□□□□□ -2
LIMCH1Q9UPQ0 U2.20-201ENST00000613956 192 ntBASIC2.55□□□□□ -2
LIMCH1Q9UPQ0 U2.9-201ENST00000615427 191 ntBASIC2.55□□□□□ -2
LIMCH1Q9UPQ0 U2.11-201ENST00000616345 191 ntBASIC2.55□□□□□ -2
LIMCH1Q9UPQ0 U2.2-201ENST00000616535 191 ntBASIC2.55□□□□□ -2
LIMCH1Q9UPQ0 U2.3-201ENST00000617785 191 ntBASIC2.55□□□□□ -2
LIMCH1Q9UPQ0 U2.19-201ENST00000618602 191 ntBASIC2.55□□□□□ -2
LIMCH1Q9UPQ0 RNU2-1-201ENST00000618664 191 ntBASIC2.55□□□□□ -2
LIMCH1Q9UPQ0 U2.6-201ENST00000619225 191 ntBASIC2.55□□□□□ -2
LIMCH1Q9UPQ0 U2.5-201ENST00000619465 191 ntBASIC2.55□□□□□ -2
LIMCH1Q9UPQ0 U2.10-201ENST00000620268 191 ntBASIC2.55□□□□□ -2
LIMCH1Q9UPQ0 SLC39A10-201ENST00000359634 5322 ntAPPRIS P1 TSL 1 (best) BASIC2.55□□□□□ -2
LIMCH1Q9UPQ0 OR2L2-202ENST00000641771 4300 ntAPPRIS P1 BASIC2.55□□□□□ -2
LIMCH1Q9UPQ0 ANKRD36-208ENST00000639751 3090 ntTSL 5 BASIC2.54□□□□□ -2
LIMCH1Q9UPQ0 CENPCP1-201ENST00000533085 2578 ntBASIC2.54□□□□□ -2
LIMCH1Q9UPQ0 RNU4-80P-201ENST00000363200 141 ntBASIC2.54□□□□□ -2
LIMCH1Q9UPQ0 Y_RNA.257-201ENST00000364596 102 ntBASIC2.54□□□□□ -2
LIMCH1Q9UPQ0 AL603910.2-201ENST00000407268 136 ntBASIC2.54□□□□□ -2
LIMCH1Q9UPQ0 RNU6ATAC23P-201ENST00000408448 123 ntBASIC2.54□□□□□ -2
LIMCH1Q9UPQ0 AC016909.1-201ENST00000415916 166 ntBASIC2.54□□□□□ -2
LIMCH1Q9UPQ0 FO680682.1-201ENST00000421261 345 ntTSL 3 BASIC2.54□□□□□ -2
LIMCH1Q9UPQ0 AL121890.1-201ENST00000435457 205 ntBASIC2.54□□□□□ -2
LIMCH1Q9UPQ0 RPL23AP7-203ENST00000449021 469 ntBASIC2.54□□□□□ -2
LIMCH1Q9UPQ0 AC137770.1-201ENST00000504620 530 ntTSL 3 BASIC2.54□□□□□ -2
LIMCH1Q9UPQ0 MTND1P19-201ENST00000511780 315 ntBASIC2.54□□□□□ -2
LIMCH1Q9UPQ0 Y_RNA.680-201ENST00000516441 93 ntBASIC2.54□□□□□ -2
LIMCH1Q9UPQ0 AC245884.12-201ENST00000615364 59 ntBASIC2.54□□□□□ -2
LIMCH1Q9UPQ0 MIER3-202ENST00000381199 5188 ntAPPRIS ALT1 TSL 1 (best) BASIC2.54□□□□□ -2
LIMCH1Q9UPQ0 PPP2R5A-205ENST00000537030 1719 ntTSL 2 BASIC2.54□□□□□ -2
LIMCH1Q9UPQ0 AC060773.1-201ENST00000421698 310 ntBASIC2.53□□□□□ -2
LIMCH1Q9UPQ0 AC108488.2-201ENST00000438485 421 ntAPPRIS P1 TSL 3 BASIC2.53□□□□□ -2
LIMCH1Q9UPQ0 HSPE1P13-201ENST00000451143 297 ntBASIC2.53□□□□□ -2
LIMCH1Q9UPQ0 RN7SL429P-201ENST00000479090 223 ntBASIC2.53□□□□□ -2
LIMCH1Q9UPQ0 RN7SL489P-201ENST00000486185 223 ntBASIC2.53□□□□□ -2
LIMCH1Q9UPQ0 RN7SL327P-201ENST00000488659 223 ntBASIC2.53□□□□□ -2
LIMCH1Q9UPQ0 AC011406.1-201ENST00000512440 370 ntBASIC2.53□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 101.6 ms