Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 AC068658.1-201ENST00000507509 388 ntTSL 2 BASIC2.77□□□□□ -1.97
TRIM39Q9HCM9 AL008718.3-201ENST00000610217 321 ntBASIC2.77□□□□□ -1.97
TRIM39Q9HCM9 AL353149.1-201ENST00000610667 244 ntBASIC2.77□□□□□ -1.97
TRIM39Q9HCM9 DSCR8-208ENST00000614538 403 ntAPPRIS P5 TSL 5 BASIC2.77□□□□□ -1.97
TRIM39Q9HCM9 5S_rRNA.13-201ENST00000622298 123 ntBASIC2.77□□□□□ -1.97
TRIM39Q9HCM9 ZNF334-205ENST00000615481 3706 ntAPPRIS ALT2 TSL 5 BASIC2.77□□□□□ -1.97
TRIM39Q9HCM9 RNU6-23P-201ENST00000363283 107 ntBASIC2.76□□□□□ -1.97
TRIM39Q9HCM9 RNU4-13P-201ENST00000364019 141 ntBASIC2.76□□□□□ -1.97
TRIM39Q9HCM9 RNU1-148P-201ENST00000384472 162 ntBASIC2.76□□□□□ -1.97
TRIM39Q9HCM9 MIR515-2-201ENST00000384883 83 ntBASIC2.76□□□□□ -1.97
TRIM39Q9HCM9 MIR515-1-201ENST00000384884 83 ntBASIC2.76□□□□□ -1.97
TRIM39Q9HCM9 MTCO2P33-201ENST00000402100 465 ntBASIC2.76□□□□□ -1.97
TRIM39Q9HCM9 RNU2-64P-201ENST00000411315 191 ntBASIC2.76□□□□□ -1.97
TRIM39Q9HCM9 AL451074.5-201ENST00000415894 435 ntBASIC2.76□□□□□ -1.97
TRIM39Q9HCM9 RPS15AP28-201ENST00000435088 386 ntBASIC2.76□□□□□ -1.97
TRIM39Q9HCM9 AC105272.1-201ENST00000438604 198 ntBASIC2.76□□□□□ -1.97
TRIM39Q9HCM9 Y_RNA.644-201ENST00000459006 113 ntBASIC2.76□□□□□ -1.97
TRIM39Q9HCM9 AL049873.1-201ENST00000480540 376 ntBASIC2.76□□□□□ -1.97
TRIM39Q9HCM9 AC097501.2-201ENST00000502668 305 ntTSL 5 BASIC2.76□□□□□ -1.97
TRIM39Q9HCM9 Y_RNA.674-201ENST00000516362 113 ntBASIC2.76□□□□□ -1.97
TRIM39Q9HCM9 RNU7-116P-201ENST00000516940 62 ntBASIC2.76□□□□□ -1.97
TRIM39Q9HCM9 RNU7-172P-201ENST00000517125 64 ntBASIC2.76□□□□□ -1.97
TRIM39Q9HCM9 AC024405.2-202ENST00000532731 184 ntBASIC2.76□□□□□ -1.97
TRIM39Q9HCM9 MIR5692C2-201ENST00000577959 77 ntBASIC2.76□□□□□ -1.97
TRIM39Q9HCM9 AC007229.1-201ENST00000590455 412 ntBASIC2.76□□□□□ -1.97
TRIM39Q9HCM9 AC013791.1-201ENST00000616619 62 ntBASIC2.76□□□□□ -1.97
TRIM39Q9HCM9 AC068647.2-201ENST00000637380 353 ntBASIC2.76□□□□□ -1.97
TRIM39Q9HCM9 NEB-203ENST00000397345 26202 ntAPPRIS ALT2 TSL 5 BASIC2.76□□□□□ -1.97
TRIM39Q9HCM9 NEB-209ENST00000427231 26202 ntAPPRIS ALT2 TSL 5 BASIC2.76□□□□□ -1.97
TRIM39Q9HCM9 FOXP2-210ENST00000403559 6415 ntTSL 2 BASIC2.76□□□□□ -1.97
TRIM39Q9HCM9 SLC4A7-201ENST00000295736 7757 ntAPPRIS P3 TSL 1 (best) BASIC2.76□□□□□ -1.97
TRIM39Q9HCM9 AL365361.1-201ENST00000566942 3481 ntBASIC2.76□□□□□ -1.97
TRIM39Q9HCM9 AC245060.5-201ENST00000610778 3293 ntBASIC2.75□□□□□ -1.97
TRIM39Q9HCM9 CACNB4-238ENST00000636901 7706 ntTSL 5 BASIC2.75□□□□□ -1.97
TRIM39Q9HCM9 AL356292.1-201ENST00000283110 373 ntBASIC2.75□□□□□ -1.97
TRIM39Q9HCM9 MIR26A1-201ENST00000362205 77 ntBASIC2.75□□□□□ -1.97
TRIM39Q9HCM9 SNORD115-3-201ENST00000363100 82 ntBASIC2.75□□□□□ -1.97
TRIM39Q9HCM9 RNU6-1020P-201ENST00000363684 107 ntBASIC2.75□□□□□ -1.97
TRIM39Q9HCM9 SNORA26.5-201ENST00000391215 123 ntBASIC2.75□□□□□ -1.97
TRIM39Q9HCM9 LINC02532-205ENST00000430094 628 ntTSL 5 BASIC2.75□□□□□ -1.97
TRIM39Q9HCM9 RAB6C-AS1-202ENST00000433431 123 ntBASIC2.75□□□□□ -1.97
TRIM39Q9HCM9 AC091133.1-201ENST00000435491 483 ntTSL 3 BASIC2.75□□□□□ -1.97
TRIM39Q9HCM9 AL135790.2-201ENST00000437701 267 ntBASIC2.75□□□□□ -1.97
TRIM39Q9HCM9 TRAPPC2P7-201ENST00000509650 231 ntBASIC2.75□□□□□ -1.97
TRIM39Q9HCM9 AC097462.1-201ENST00000514125 324 ntBASIC2.75□□□□□ -1.97
TRIM39Q9HCM9 RNU6-1041P-201ENST00000516254 102 ntBASIC2.75□□□□□ -1.97
TRIM39Q9HCM9 RNA5SP137-201ENST00000516833 135 ntBASIC2.75□□□□□ -1.97
TRIM39Q9HCM9 GTF3AP2-201ENST00000557014 266 ntBASIC2.75□□□□□ -1.97
TRIM39Q9HCM9 AC024610.1-201ENST00000582685 323 ntTSL 3 BASIC2.75□□□□□ -1.97
TRIM39Q9HCM9 ZNF861P-201ENST00000588126 639 ntBASIC2.75□□□□□ -1.97
TRIM39Q9HCM9 AL031274.2-201ENST00000599419 203 ntBASIC2.75□□□□□ -1.97
TRIM39Q9HCM9 AC005972.2-201ENST00000604690 348 ntBASIC2.75□□□□□ -1.97
TRIM39Q9HCM9 U6.73-201ENST00000619194 103 ntBASIC2.75□□□□□ -1.97
TRIM39Q9HCM9 AL365265.1-201ENST00000621045 234 ntBASIC2.75□□□□□ -1.97
TRIM39Q9HCM9 AKAP9-203ENST00000359028 12247 ntAPPRIS ALT2 TSL 5 BASIC2.75□□□□□ -1.97
TRIM39Q9HCM9 SMARCAD1-201ENST00000354268 4912 ntAPPRIS P3 TSL 1 (best) BASIC2.74□□□□□ -1.97
TRIM39Q9HCM9 RNU1-22P-201ENST00000363334 158 ntBASIC2.74□□□□□ -1.97
TRIM39Q9HCM9 RNU6-417P-201ENST00000384712 107 ntBASIC2.74□□□□□ -1.97
TRIM39Q9HCM9 RNU6-376P-201ENST00000384731 106 ntBASIC2.74□□□□□ -1.97
TRIM39Q9HCM9 AL138827.1-201ENST00000402666 306 ntBASIC2.74□□□□□ -1.97
TRIM39Q9HCM9 AL355497.1-201ENST00000406262 551 ntBASIC2.74□□□□□ -1.97
TRIM39Q9HCM9 RNU4ATAC16P-201ENST00000408512 126 ntBASIC2.74□□□□□ -1.97
TRIM39Q9HCM9 SAR1B-211ENST00000509937 455 ntTSL 5 BASIC2.74□□□□□ -1.97
TRIM39Q9HCM9 RN7SKP132-201ENST00000516001 208 ntBASIC2.74□□□□□ -1.97
TRIM39Q9HCM9 MIR4658-201ENST00000584344 65 ntBASIC2.74□□□□□ -1.97
TRIM39Q9HCM9 AC098479.1-201ENST00000609225 154 ntBASIC2.74□□□□□ -1.97
TRIM39Q9HCM9 AC026523.1-201ENST00000617221 490 ntTSL 5 BASIC2.74□□□□□ -1.97
TRIM39Q9HCM9 MGAT4C-207ENST00000552808 1937 ntAPPRIS P1 TSL 2 BASIC2.74□□□□□ -1.97
TRIM39Q9HCM9 SENP7-205ENST00000394091 4434 ntAPPRIS ALT2 TSL 1 (best) BASIC2.73□□□□□ -1.97
TRIM39Q9HCM9 EYS-202ENST00000342421 2168 ntTSL 1 (best) BASIC2.73□□□□□ -1.97
TRIM39Q9HCM9 RNU6-1205P-201ENST00000363625 106 ntBASIC2.73□□□□□ -1.97
TRIM39Q9HCM9 RNA5SP493-201ENST00000364115 91 ntBASIC2.73□□□□□ -1.97
TRIM39Q9HCM9 SNORD114-6-201ENST00000364393 72 ntBASIC2.73□□□□□ -1.97
TRIM39Q9HCM9 Y_RNA.293-201ENST00000364908 93 ntBASIC2.73□□□□□ -1.97
TRIM39Q9HCM9 RNU6-144P-201ENST00000383951 107 ntBASIC2.73□□□□□ -1.97
TRIM39Q9HCM9 MIR634-201ENST00000385208 97 ntBASIC2.73□□□□□ -1.97
TRIM39Q9HCM9 AL592431.2-201ENST00000422198 171 ntTSL 3 BASIC2.73□□□□□ -1.97
TRIM39Q9HCM9 AC018634.1-201ENST00000437554 401 ntBASIC2.73□□□□□ -1.97
TRIM39Q9HCM9 AC104332.1-201ENST00000440471 797 ntBASIC2.73□□□□□ -1.97
TRIM39Q9HCM9 U8.19-201ENST00000459095 133 ntBASIC2.73□□□□□ -1.97
TRIM39Q9HCM9 RNU7-141P-201ENST00000459304 62 ntBASIC2.73□□□□□ -1.97
TRIM39Q9HCM9 AP001001.1-201ENST00000532422 826 ntTSL 3 BASIC2.73□□□□□ -1.97
TRIM39Q9HCM9 AC079600.2-201ENST00000550076 130 ntBASIC2.73□□□□□ -1.97
TRIM39Q9HCM9 AC011921.3-201ENST00000605540 361 ntBASIC2.73□□□□□ -1.97
TRIM39Q9HCM9 AC004832.4-201ENST00000608952 331 ntBASIC2.73□□□□□ -1.97
TRIM39Q9HCM9 AL359075.3-201ENST00000613288 217 ntBASIC2.73□□□□□ -1.97
TRIM39Q9HCM9 MIR548AY-201ENST00000617669 107 ntBASIC2.73□□□□□ -1.97
TRIM39Q9HCM9 SACS-201ENST00000382292 15324 ntAPPRIS P1 TSL 5 BASIC2.73□□□□□ -1.97
TRIM39Q9HCM9 ZMYM1-201ENST00000359858 4175 ntAPPRIS P1 TSL 1 (best) BASIC2.72□□□□□ -1.97
TRIM39Q9HCM9 CEP44-203ENST00000426172 3037 ntTSL 5 BASIC2.72□□□□□ -1.97
TRIM39Q9HCM9 RNU1-112P-201ENST00000364401 164 ntBASIC2.72□□□□□ -1.97
TRIM39Q9HCM9 ASPN-202ENST00000375544 2470 ntAPPRIS P1 TSL 1 (best) BASIC2.72□□□□□ -1.97
TRIM39Q9HCM9 RNU6-1323P-201ENST00000384025 107 ntBASIC2.72□□□□□ -1.97
TRIM39Q9HCM9 MIR9-1-201ENST00000385198 89 ntBASIC2.72□□□□□ -1.97
TRIM39Q9HCM9 RNA5SP323-201ENST00000391094 133 ntBASIC2.72□□□□□ -1.97
TRIM39Q9HCM9 CHD9-202ENST00000398510 11337 ntTSL 1 (best) BASIC2.72□□□□□ -1.97
TRIM39Q9HCM9 SNORA11.4-201ENST00000408823 129 ntBASIC2.72□□□□□ -1.97
TRIM39Q9HCM9 RNU6-1186P-201ENST00000410429 97 ntBASIC2.72□□□□□ -1.97
TRIM39Q9HCM9 RNA5SP21-201ENST00000410917 96 ntBASIC2.72□□□□□ -1.97
TRIM39Q9HCM9 PIGPP3-201ENST00000425307 415 ntBASIC2.72□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 102.5 ms